Guide to the Human Genome
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Name: CD93 Sequence: fasta or formatted (652aa) NCBI GI: 88758613
Description:

CD93 antigen precursor

Referenced in:

Complement
Epidermal Growth Factor

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         50           2
 C cysteine            6.6         43           1
 D aspartate           4.9         32           2
 E glutamate           5.8         38           2
 F phenylalanine       2.8         18           1
 G glycine            11.8         77           3
 H histidine           1.7         11           2
 I isoleucine          1.1          7           1
 K lysine              4.3         28           2
 L leucine             9.4         61           9
 M methionine          1.1          7           1
 N asparagine          3.2         21           2
 P proline             8.1         53           2
 Q glutamine           4.1         27           1
 R arginine            4.0         26           2
 S serine              9.0         59           3
 T threonine           5.8         38           2
 V valine              5.2         34           2
 W tryptophan          1.4          9           1
 Y tyrosine            2.0         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD93 antigen precursor 
CD248                 0.129   tumor endothelial marker 1 precursor 
THBD                  0.127   thrombomodulin precursor 
FBLN1                 0.093   fibulin 1 isoform B precursor 
FBLN1                 0.093   fibulin 1 isoform A precursor 
FBLN1                 0.093   fibulin 1 isoform D 
FBLN1                 0.093   fibulin 1 isoform C precursor 
MEGF6                 0.089   EGF-like-domain, multiple 3 
FBN1                  0.087   fibrillin 1 precursor 
VWCE                  0.086   von Willebrand factor C and EGF domains 
LTBP1                 0.084   latent transforming growth factor beta binding prote...
LTBP1                 0.084   latent transforming growth factor beta binding prote...
FBN2                  0.083   fibrillin 2 precursor 
SCUBE3                0.083   signal peptide, CUB domain, EGF-like 3 
LTBP3                 0.082   latent transforming growth factor beta binding prot...
LTBP3                 0.082   latent transforming growth factor beta binding prote...
LTBP4                 0.082   latent transforming growth factor beta binding prot...
LTBP4                 0.082   latent transforming growth factor beta binding prot...
LTBP4                 0.082   latent transforming growth factor beta binding prot...
FBLN5                 0.080   fibulin 5 precursor 
FBN3                  0.077   fibrillin 3 precursor 
EFEMP2                0.077   EGF-containing fibulin-like extracellular matrix pr...
SCUBE2                0.076   CEGP1 protein 
LTBP2                 0.076   latent transforming growth factor beta binding protei...
FBLN2                 0.075   fibulin 2 isoform b precursor 
FBLN2                 0.075   fibulin 2 isoform a precursor 
SCUBE1                0.074   signal peptide, CUB domain, EGF-like 1 
MATN2                 0.073   matrilin 2 isoform b precursor 
MATN2                 0.073   matrilin 2 isoform a precursor 
HMCN1                 0.073   hemicentin 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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