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Search of human proteins with 224586882
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|224586882 cold shock domain protein A isoform a [Homo
sapiens]
(372 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|224586882 cold shock domain protein A isoform a [Homo sapiens] 765 0.0
gi|224586884 cold shock domain protein A isoform b [Homo sapiens] 441 e-124
gi|34098946 nuclease sensitive element binding protein 1 [Homo s... 313 2e-85
gi|156415990 Y box binding protein 2 [Homo sapiens] 238 6e-63
gi|13375938 lin-28 homolog [Homo sapiens] 67 3e-11
gi|51972214 lin-28 homolog B [Homo sapiens] 65 1e-10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 45 1e-04
gi|4758392 forkhead box D1 [Homo sapiens] 45 1e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 45 1e-04
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 44 3e-04
gi|82534351 microtubule-associated protein tau isoform 1 [Homo s... 43 5e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 43 5e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 43 5e-04
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 42 9e-04
gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens] 42 9e-04
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 42 0.001
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 42 0.001
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 42 0.001
gi|110832843 TBP-associated factor 4 [Homo sapiens] 40 0.003
gi|167736355 mucin 4 isoform a [Homo sapiens] 40 0.003
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 40 0.003
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi... 40 0.003
gi|19111150 angiomotin isoform 2 [Homo sapiens] 40 0.003
gi|166064029 angiomotin isoform 1 [Homo sapiens] 40 0.003
gi|54860105 nadrin isoform 2 [Homo sapiens] 40 0.004
gi|6754638 microtubule-associated protein tau isoform 2 [Homo sa... 39 0.006
gi|8400715 microtubule-associated protein tau isoform 4 [Homo sa... 39 0.006
gi|8400711 microtubule-associated protein tau isoform 3 [Homo sa... 39 0.006
gi|178557736 microtubule-associated protein tau isoform 5 [Homo ... 39 0.006
>gi|224586882 cold shock domain protein A isoform a [Homo sapiens]
Length = 372
Score = 765 bits (1975), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA
Sbjct: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
Query: 61 APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ 120
APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ
Sbjct: 61 APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ 120
Query: 121 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG 180
TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG
Sbjct: 121 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG 180
Query: 181 YYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY 240
YYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY
Sbjct: 181 YYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY 240
Query: 241 HVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPR 300
HVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPR
Sbjct: 241 HVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPR 300
Query: 301 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE 360
PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE
Sbjct: 301 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE 360
Query: 361 NPAPPTQQSSAE 372
NPAPPTQQSSAE
Sbjct: 361 NPAPPTQQSSAE 372
>gi|224586884 cold shock domain protein A isoform b [Homo sapiens]
Length = 303
Score = 441 bits (1133), Expect = e-124
Identities = 256/372 (68%), Positives = 262/372 (70%), Gaps = 69/372 (18%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA
Sbjct: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
Query: 61 APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ 120
APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ
Sbjct: 61 APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ 120
Query: 121 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG 180
TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG
Sbjct: 121 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG 180
Query: 181 YYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY 240
YYGRRRGPPRN AGE E G EG Q G + R P YRP+YR R P
Sbjct: 181 YYGRRRGPPRN-AGEIGEMKDGVPEG-------AQLQGPVH--RNPTYRPRYRSRGPP-- 228
Query: 241 HVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPR 300
P P A +GE +D + A GP P+ R YR R R
Sbjct: 229 ------------RPRP----APAVGEAEDKENQQA-TSGP--NQPSVRRGYRRPYNYRRR 269
Query: 301 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE 360
P P PN PS QDGKEAKAGEAPTE
Sbjct: 270 PRP----------------PNAPS----------------------QDGKEAKAGEAPTE 291
Query: 361 NPAPPTQQSSAE 372
NPAPPTQQSSAE
Sbjct: 292 NPAPPTQQSSAE 303
>gi|34098946 nuclease sensitive element binding protein 1 [Homo
sapiens]
Length = 324
Score = 313 bits (802), Expect = 2e-85
Identities = 192/338 (56%), Positives = 217/338 (64%), Gaps = 29/338 (8%)
Query: 41 PQAAAPAPAAHVAGN--PGGDAAPAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWF 98
P AA PA A A + PG + A +G + A AG + KKV+ATKVLGTVKWF
Sbjct: 10 PPAAPPAAPALSAADTKPGTTGSGAGSGGPGGLTSAAPAGGD---KKVIATKVLGTVKWF 66
Query: 99 NVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 158
NVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT
Sbjct: 67 NVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT 126
Query: 159 GPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSG 218
GP GVPV+GS+YAADR YRR Y RRRGPPRNY + SG A + Q
Sbjct: 127 GPGGVPVQGSKYAADRNHYRR--YPRRRGPPRNYQQNYQNSESGEKNEGSESAPEGQ--- 181
Query: 219 ARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQ 278
Q RRP YR+RRFPPY++ + + RR + + N GE+ E D +GA Q
Sbjct: 182 --AQQRRP-----YRRRRFPPYYMRRPYGRRPQ---YSNPPVQGEVMEGADN--QGAGEQ 229
Query: 279 G-PVHRN--PTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNY 335
G PV +N YRPR+R RGPPR R G EDKENQ + QP RR YRR +NY
Sbjct: 230 GRPVRQNMYRGYRPRFR-RGPPRQRQPREDGNEEDKENQGDETQGQQPPQRR-YRRNFNY 287
Query: 336 RRRPRPPNAPSQDGKEAKAGEAPTEN-PAPPTQQSSAE 372
RRR RP N QDGKE KA + P EN AP +Q AE
Sbjct: 288 RRR-RPENPKPQDGKETKAADPPAENSSAPEAEQGGAE 324
>gi|156415990 Y box binding protein 2 [Homo sapiens]
Length = 364
Score = 238 bits (607), Expect = 6e-63
Identities = 166/373 (44%), Positives = 196/373 (52%), Gaps = 29/373 (7%)
Query: 4 AGEATTTTTTTLPQAPTEAAAAAPQDPA--PKSPVGSGAPQAAAPAPAAHVAGNPGGDAA 61
A AT T+P A PA P+ G+G AA PAA PG
Sbjct: 7 AAGATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSAPGS-RT 65
Query: 62 PAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 121
P TA + + A A S+ A+K VLA +VLGTVKWFNVRNGYGFINRNDTKEDVFVHQT
Sbjct: 66 PGNPATAVSGTPAPPARSQ-ADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKEDVFVHQT 124
Query: 122 AIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGY 181
AIK+NNPRK+LRSVGDGETVEFDVVEGEKGAEA NVTGP GVPV+GSRYA +RR+ RR
Sbjct: 125 AIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRRKSRRFI 184
Query: 182 YGRRRGPPRNYAGEEEEEGSG-SSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY 240
P E G+G S+G A + +RP R+ PP+
Sbjct: 185 PRPPSVAPPPMVAEIPSAGTGPGSKG----------ERAEDSGQRP------RRWCPPPF 228
Query: 241 HVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVP-EGAQLQGPVH-RNPTYRPRYRSRGPPR 298
+ F R R I+ + E K+ P EG Q QG P +RPRYR PR
Sbjct: 229 FYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPRYRRPFRPR 288
Query: 299 PRPAPAV--GEAEDKENQQATSGPNQPSVRRGYRRPYNYRRR---PRPPNAPSQDGKEAK 353
PR P G+ E K +Q G ++P +R RPY RRR P P AP A
Sbjct: 289 PRQQPTTEGGDGETKPSQGPADG-SRPEPQRPRNRPYFQRRRQQAPGPQQAPGPRQPAAP 347
Query: 354 AGEAPTENPAPPT 366
AP + P T
Sbjct: 348 ETSAPVNSGDPTT 360
>gi|13375938 lin-28 homolog [Homo sapiens]
Length = 209
Score = 67.0 bits (162), Expect = 3e-11
Identities = 51/139 (36%), Positives = 65/139 (46%), Gaps = 18/139 (12%)
Query: 64 ATGTAAAASLATAAGSEDAEKKVLATKVL---GTVKWFNVRNGYGFINRN-------DTK 113
A G A AA A EDA + ++L G KWFNVR G+GF++ D
Sbjct: 10 AGGCAKAAEEAPEEAPEDAARAADEPQLLHGAGICKWFNVRMGFGFLSMTARAGVALDPP 69
Query: 114 EDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAAD 173
DVFVHQ+ + RS+ +GE VEF + KG E+ VTGP GV GS +
Sbjct: 70 VDVFVHQSKLHMEG----FRSLKEGEAVEFTFKKSAKGLESIRVTGPGGVFCIGS----E 121
Query: 174 RRRYRRGYYGRRRGPPRNY 192
RR + RR R Y
Sbjct: 122 RRPKGKSMQKRRSKGDRCY 140
>gi|51972214 lin-28 homolog B [Homo sapiens]
Length = 250
Score = 64.7 bits (156), Expect = 1e-10
Identities = 41/96 (42%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 80 EDAEKKVLATKVLGTVKWFNVRNGYGFI---NRN----DTKEDVFVHQTAIKKNNPRKYL 132
E AE++ + G KWFNVR G+GFI NR D DVFVHQ+ +
Sbjct: 19 EPAEEESQVLRGTGHCKWFNVRMGFGFISMINREGSPLDIPVDVFVHQSKLFMEG----F 74
Query: 133 RSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGS 168
RS+ +GE VEF + KG E+ VTGP G P GS
Sbjct: 75 RSLKEGEPVEFTFKKSSKGLESIRVTGPGGSPCLGS 110
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 45.1 bits (105), Expect = 1e-04
Identities = 89/355 (25%), Positives = 116/355 (32%), Gaps = 45/355 (12%)
Query: 23 AAAAPQDPAPKSPVGSGAPQAA-------APAPAAHVAGNPGGDAAPAATGTAAAASLAT 75
A A + P+ P GS PQ PA AA AGNPG D P A G A +A
Sbjct: 348 AVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAG 407
Query: 76 AAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSV 135
A G A + G + G +K D K P
Sbjct: 408 APGFPGARG---PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGA------KGEPGPVGVQG 458
Query: 136 GDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGE 195
G E EG++GA GP G+P R G G P+ AGE
Sbjct: 459 PPGPAGE----EGKRGARGE--PGPTGLPGPPGERGGPGSRGFPGADG--VAGPKGPAGE 510
Query: 196 EEEEGSGSSEGFDPPA---TDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRV 252
G +G A + GA+ P P + PP GQ R
Sbjct: 511 RGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPG-SPGPDGKTGPPGPAGQD----GRP 565
Query: 253 LPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKE 312
P G+ G M P+GA + + RG P P A + +
Sbjct: 566 GPPGPPGARGQAGVMGFPGPKGAAGE---------PGKAGERGVPGPPGAVGPAGKDGEA 616
Query: 313 NQQATSGPNQPSVRRGYRRPY---NYRRRPRPPNAPSQDGKEAKAGEAPTENPAP 364
Q GP P+ RG + P ++ P P P + GK + G P + AP
Sbjct: 617 GAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQG-VPGDLGAP 670
Score = 40.4 bits (93), Expect = 0.003
Identities = 85/366 (23%), Positives = 103/366 (28%), Gaps = 90/366 (24%)
Query: 24 AAAPQDPAPKSPVGSGAPQAAAPAPA----------AHVAGNPGGDAAPAATGTAAAASL 73
A AP D P G P A AP A AG PG D P A G A
Sbjct: 775 AGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGA 834
Query: 74 ATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLR 133
AG +G V + G
Sbjct: 835 KGDAGPPGPAGPAGPPGPIGNVGAPGAKGARG---------------------------- 866
Query: 134 SVGDGETVEFDVVEGEKGAEA-ANVTGPDGVPVEGSRYAADRRRYRRGYYGR--RRGPPR 190
S G F G G + GP G P + R G GR GPP
Sbjct: 867 SAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPG 926
Query: 191 --NYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDR 248
AGE+ G+ G + +G R + P R + R FP
Sbjct: 927 PPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGE---RGFPG--------- 974
Query: 249 RSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEA 308
LP P+ GE G K G P GA + RGPP P P +
Sbjct: 975 ----LPGPS----GEPG--KQG-PSGASGE---------------RGPPGPMGPPGLAGP 1008
Query: 309 EDKENQQATSGPNQPSVR---------RGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPT 359
+ ++ G R RG P P P AP G K+G+
Sbjct: 1009 PGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGE 1068
Query: 360 ENPAPP 365
PA P
Sbjct: 1069 TGPAGP 1074
Score = 39.7 bits (91), Expect = 0.004
Identities = 91/378 (24%), Positives = 116/378 (30%), Gaps = 78/378 (20%)
Query: 5 GEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAA 64
GEA LP A + +P P P G P PA G PG P A
Sbjct: 524 GEAGRPGEAGLPGA--KGLTGSPGSPGPDGKTGP-------PGPAGQ-DGRPGPPGPPGA 573
Query: 65 TGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIK 124
G A G+ K V G K+ Q
Sbjct: 574 RGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG----------KDGEAGAQGPPG 623
Query: 125 KNNPRKYLRSVGDGETVEFDVVEGEKGAEA-ANVTGPDGVPVEGSRYAADRRRYRRGYYG 183
P G + F + G G A G GVP + R RG+ G
Sbjct: 624 PAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPG 683
Query: 184 RR--RGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYH 241
R +GPP G G+ + G D D GA P +
Sbjct: 684 ERGVQGPP----GPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQ------------ 727
Query: 242 VGQTFDRRSRVLPHP--NRIQAGEIGEMKDGVP--EGAQ-LQGPVHRNPTYRPRYRSRGP 296
G +R + LP P +R AG G DG P +G + L GP+ GP
Sbjct: 728 -GMPGERGAAGLPGPKGDRGDAGPKGA--DGSPGKDGVRGLTGPI-------------GP 771
Query: 297 PRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPN---------APSQ 347
P P AP + SGP+ P+ G R R P PP A Q
Sbjct: 772 PGPAGAPG---------DKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQ 822
Query: 348 DGKEAKAGEAPTENPAPP 365
G + + G+A + A P
Sbjct: 823 PGAKGEPGDAGAKGDAGP 840
Score = 35.0 bits (79), Expect = 0.11
Identities = 64/249 (25%), Positives = 83/249 (33%), Gaps = 34/249 (13%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRR--RGPPRNYAGEEEEEGSGSSE 205
GE+G + GP G P + A R G G GPP GE EG+ +E
Sbjct: 968 GERGFPG--LPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPP----GESGREGAPGAE 1021
Query: 206 GFDPPATDRQFSGARNQL--RRPQYRPQYRQRRFPPYHVGQTFDR--------------- 248
G G R + P P P G++ DR
Sbjct: 1022 GSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPV 1081
Query: 249 --RSRVLPHPNRIQAGEIGEMKDGVPEGAQ----LQGPVHR--NPTYRPRYRSRGPPRPR 300
R P R GE GE D +G + LQGP +P + + GP PR
Sbjct: 1082 GARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR 1141
Query: 301 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE 360
P A K+ GP P RG P PP P G + AG +
Sbjct: 1142 GPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPS-AGFDFSF 1200
Query: 361 NPAPPTQQS 369
P PP +++
Sbjct: 1201 LPQPPQEKA 1209
Score = 30.8 bits (68), Expect = 2.0
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 295 GPPRPRPAPAVGEAEDKENQQATSG-PNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAK 353
GP PR P A + Q G P +P G P R P PP DG+ K
Sbjct: 182 GPSGPRGLPGPPGAPGPQGFQGPPGEPGEP----GASGPMGPRGPPGPPGKNGDDGEAGK 237
Query: 354 AGEAPTENPAPP 365
G P P
Sbjct: 238 PGRPGERGPPGP 249
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 45.1 bits (105), Expect = 1e-04
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 19 PTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAG 78
P AAAAA Q A S +P AA PAP + + GG AA AA G AAA + + A
Sbjct: 374 PAAAAAAAAQAAAAAQASPSPSPVAAPPAPGS----SGGGCAAQAAVGPAAALTRSLVAA 429
Query: 79 SEDAEKKVLATKVLGTV 95
+ A V ++ LGT+
Sbjct: 430 AAAAASSVSSSAALGTL 446
Score = 33.1 bits (74), Expect = 0.41
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 5 GEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAH-VAGNPGGDAAPA 63
G A T P AA P P P S +G P A+A A + + GG PA
Sbjct: 317 GAAAELARTAFGYRPHPLGAALP-GPLPASAAKAGGPGASALARSPFSIESIIGGSLGPA 375
Query: 64 ATGTAAAASLATAAGSEDAEKKVLATKVLGT 94
A AAAA A AA + + V A G+
Sbjct: 376 AAA-AAAAQAAAAAQASPSPSPVAAPPAPGS 405
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 45.1 bits (105), Expect = 1e-04
Identities = 54/217 (24%), Positives = 84/217 (38%), Gaps = 39/217 (17%)
Query: 184 RRRGP-PRNYAGEEEEEGSGSSE-----GFDPPATDRQFSGARNQLRRPQYRPQYRQRRF 237
RRR P PR Y+ + S S PP R+ S + RR + P +QR
Sbjct: 587 RRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSS 646
Query: 238 P-----------PYHVGQTFDRRSRVL--PHPNRIQAGEIGEMKDGVPEGAQLQGPVHRN 284
P + G + R +R P PN+ + + P+ + PV R
Sbjct: 647 PVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPS---PRPRAPQTSSSPPPVRRG 703
Query: 285 PTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPSVRR--------GYRRPYNYR 336
+ P+ R P RP V + + + + P+ SVRR G P +
Sbjct: 704 ASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEP-AAK 762
Query: 337 RRPRPPN-----APSQDGKEA---KAGEAPTENPAPP 365
+ P PP+ +PS + A K ++PT +P+PP
Sbjct: 763 KPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPP 799
Score = 39.3 bits (90), Expect = 0.006
Identities = 49/205 (23%), Positives = 66/205 (32%), Gaps = 38/205 (18%)
Query: 189 PRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDR 248
PR E EE G + + A + +R QYR Q +Q + D
Sbjct: 457 PRKVELSESEEDKGG-----------KMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDE 505
Query: 249 RSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRP--------- 299
R P + ++ GE+G + P + P R PR R R P P
Sbjct: 506 R----PKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSP 561
Query: 300 RPAPAVGEAEDKENQQATSGPNQPSVRRG-----YRRPYNYRRRPRPP------NAPSQD 348
PAP P+ P RR Y P R P PP + P
Sbjct: 562 SPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPP 621
Query: 349 GKEAKAGEAP---TENPAPPTQQSS 370
+ A P + PP Q+SS
Sbjct: 622 KRRASPSPPPKRRVSHSPPPKQRSS 646
Score = 28.9 bits (63), Expect = 7.8
Identities = 43/211 (20%), Positives = 69/211 (32%), Gaps = 41/211 (19%)
Query: 195 EEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLP 254
E+E+ S + D D++ + + R P+ R+ R P + RR R
Sbjct: 137 EQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSPSPRRRSSPVRRERKRS 196
Query: 255 HPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGP----------PRPRPAPA 304
H + PE + + P P+ + + S P+P P P
Sbjct: 197 HSRSPRHRTKSRSPSPAPEKKE-KTPELPEPSVKVKEPSVQEATSTSDILKVPKPEPIPE 255
Query: 305 VGEAEDKENQQ----------------------ATSGPNQPSVRRGYR---RPYNYRRRP 339
E ++N + + P+ RR +R R Y+ RRRP
Sbjct: 256 PKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRP 315
Query: 340 RPPNAPSQDGKEAKAGEAPTENPAPPTQQSS 370
P PS + P P PP + S
Sbjct: 316 SPRRRPS-----PRRRTPPRRMPPPPRHRRS 341
Score = 28.9 bits (63), Expect = 7.8
Identities = 30/116 (25%), Positives = 40/116 (34%), Gaps = 35/116 (30%)
Query: 284 NPTYRPRYRSRGPPRPRPAP-------------------AVGEAEDKENQQATSGPNQPS 324
+P RP R R PPR P P G + + ++ S P +P
Sbjct: 316 SPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPP 375
Query: 325 VR-----RGYRR------PYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPPTQQS 369
R R RR P R RP PP P K +PT + T++S
Sbjct: 376 KRTSSPPRKTRRLSPSASPPRRRHRPSPPATP-----PPKTRHSPTPQQSNRTRKS 426
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 43.9 bits (102), Expect = 2e-04
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 239 PYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPR 298
P GQ R+ L H ++ + G+ ++ +G P+G G +H + R R+ R
Sbjct: 234 PVQSGQ--QRQVEQLQHRHQHERGQ-QQLVEGAPDGV---GHLHGS---RGSGRAATTTR 284
Query: 299 PRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAP 358
P+ PA + + + + G +P+ R RP RRP P APS +AG P
Sbjct: 285 PQTTPAAASPDLPQPAERSRGEPRPAEPRAPPRPPPAARRPPPATAPS----PRRAGSPP 340
Query: 359 TENPAPPTQQSSA 371
T P ++S+A
Sbjct: 341 TREEEPRPRRSAA 353
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 43.5 bits (101), Expect = 3e-04
Identities = 54/215 (25%), Positives = 79/215 (36%), Gaps = 24/215 (11%)
Query: 160 PDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGA 219
P G P +G D+ R R G+ +GPP +G +G PP Q
Sbjct: 98 PQGPPPQG-----DKSRSPRSPPGKPQGPP--------PQGGNQPQGPPPPPGKPQGPPP 144
Query: 220 RNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEG-AQLQ 278
+ +PQ P + + PP G R SR P + + G G P + Q
Sbjct: 145 QGG-NKPQGPPPPGKPQGPPPQ-GDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 202
Query: 279 GPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPS--VRRGYRRPYNYR 336
GP + + +GPP P D ++Q A S P +P +G +P
Sbjct: 203 GPPPQGGN-----KPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPP 257
Query: 337 RRP-RPPNAPSQDGKEAKAGEAPTENPAPPTQQSS 370
P +P P Q G + + P + PP Q S
Sbjct: 258 PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGS 292
Score = 40.4 bits (93), Expect = 0.003
Identities = 42/190 (22%), Positives = 64/190 (33%), Gaps = 20/190 (10%)
Query: 183 GRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQY--RQRRFPPY 240
G+ +GPP + + PP D + AR+ +PQ P Q + PP
Sbjct: 199 GKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPP- 257
Query: 241 HVGQTFDRRSRVLPHPNRIQAG--EIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPR 298
P P + Q + G G P + QGP + + SR PP
Sbjct: 258 -------------PPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGS--KSRSSRSPPG 302
Query: 299 PRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAP 358
P + G Q +G +P +P P Q G ++++ +P
Sbjct: 303 KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGSKSRSARSP 362
Query: 359 TENPAPPTQQ 368
P P QQ
Sbjct: 363 PGKPQGPPQQ 372
Score = 37.0 bits (84), Expect = 0.029
Identities = 50/220 (22%), Positives = 81/220 (36%), Gaps = 33/220 (15%)
Query: 160 PDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGA 219
P G P +G ++ R R G+ +GPP +G +G PP Q
Sbjct: 159 PQGPPPQGD----NKSRSSRSPPGKPQGPP--------PQGGNQPQGPPPPPGKPQGPPP 206
Query: 220 RNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEG-AQLQ 278
+ +PQ P + + PP G + +R P + + G G P + Q
Sbjct: 207 QGG-NKPQGPPPPGKPQGPPPQ-GDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQ 264
Query: 279 GPVHRNPTYRPRYRSRGPP---RPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNY 335
GP + + +GPP +P+ P G ++ + ++ P P + G N
Sbjct: 265 GPPPQGGN-----KPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGG-----NQ 314
Query: 336 RRRPRPP-----NAPSQDGKEAKAGEAPTENPAPPTQQSS 370
+ P PP P Q G + + P + PP Q S
Sbjct: 315 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGGS 354
Score = 34.3 bits (77), Expect = 0.19
Identities = 28/104 (26%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 270 GVPEGAQLQGPVHRNPTYRPRYRSRGPPR--------PRPAPAVGEAEDKENQQATSGPN 321
G P+GA QG P + +GPP P P P + + GP
Sbjct: 34 GNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 93
Query: 322 QPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPP 365
P +G + R PR P Q G + G P P PP
Sbjct: 94 PPGKPQGPPPQGDKSRSPRSPPGKPQ-GPPPQGGNQPQGPPPPP 136
Score = 32.3 bits (72), Expect = 0.70
Identities = 29/111 (26%), Positives = 39/111 (35%), Gaps = 13/111 (11%)
Query: 265 GEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPP--------RPRPAPAVGEAEDKENQQA 316
G G P+G QG R+P P + +GPP P P P + +
Sbjct: 91 GPPPPGKPQGPPPQGDKSRSPR-SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNK 149
Query: 317 TSGPNQPSVRRGYRRPYNYRRRP--RPPNAPSQDGKEAKAGEAPTENPAPP 365
GP P +G + + R PP P G + G P P PP
Sbjct: 150 PQGPPPPGKPQGPPPQGDNKSRSSRSPPGKP--QGPPPQGGNQPQGPPPPP 198
>gi|82534351 microtubule-associated protein tau isoform 1 [Homo
sapiens]
Length = 758
Score = 42.7 bits (99), Expect = 5e-04
Identities = 74/358 (20%), Positives = 121/358 (33%), Gaps = 49/358 (13%)
Query: 25 AAPQD--PAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATAAGSEDA 82
++PQD P+ SP G P A A + G P A P + S A D
Sbjct: 227 SSPQDSPPSKASPAQDGRPPQTAAREATSIPGFPAEGAIPLPVDFLSKVSTEIPASEPDG 286
Query: 83 EKKVLATKVLGTVKWFNVRNGYGF---INRNDTKEDVFVHQ-------TAIKKNNPRKYL 132
+G K + + F I N KE + P
Sbjct: 287 PS-------VGRAKGQDAPLEFTFHVEITPNVQKEQAHSEEHLGRAAFPGAPGEGPEARG 339
Query: 133 RSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNY 192
S+G+ +T E D+ E + AA P G PV SR + R ++
Sbjct: 340 PSLGE-DTKEADLPEPSEKQPAA---APRGKPV--SRVPQLK--------ARMVSKSKDG 385
Query: 193 AGEEEEEGSGSSEGFDPPATDRQF-------SGARNQLRRPQYRPQYRQRRFPPYHVGQT 245
G ++++ S+ +R G+ + L +P + P HV
Sbjct: 386 TGSDDKKAKTSTRSSAKTLKNRPCLSPKHPTPGSSDPLIQPSSPAVCPEPPSSPKHVSSV 445
Query: 246 FDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAV 305
R +++ + G+ K P GA G + R ++ PP P+ P+
Sbjct: 446 TSRTGSSGAKEMKLKGAD-GKTKIATPRGAAPPG--QKGQANATRIPAKTPPAPKTPPSS 502
Query: 306 GEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPA 363
GE ++ S P P P + R P P P+++ K+ P ++P+
Sbjct: 503 GEPPKSGDRSGYSSPGSPGT------PGSRSRTPSLPTPPTREPKKVAVVRTPPKSPS 554
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 42.7 bits (99), Expect = 5e-04
Identities = 90/385 (23%), Positives = 119/385 (30%), Gaps = 94/385 (24%)
Query: 14 TLPQAPTEAAAAAPQ--DPAPKSPVGS----GAP----QAAAPAPAAHVAGNPGGDAAPA 63
T P P A A + + P P GS GAP + P PA AG PG D P
Sbjct: 788 TGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGF-AGPPGADGQPG 846
Query: 64 ATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAI 123
A G A AG+ + A G T +
Sbjct: 847 AKGEQGEAGQKGDAGAPGPQGPSGAPGPQGP--------------------------TGV 880
Query: 124 KKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT-GPDGVPVEGSRYAADRRRYRRGYY 182
P+ + G F G G +N GP G P + R G
Sbjct: 881 --TGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPP 938
Query: 183 GRRRGP----PRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFP 238
GR P P GE+ E G G + P + +G R + P R + R FP
Sbjct: 939 GRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE---RGFP 995
Query: 239 PYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPR 298
LP P+ GE G K G P + RGPP
Sbjct: 996 G-------------LPGPS----GEPG--KQGAPGASG----------------DRGPPG 1020
Query: 299 PRPAPAVGEAEDKENQQATSGPNQPSVR---------RGYRRPYNYRRRPRPPNAP---S 346
P P + + ++ + G + P R RG P PP +P
Sbjct: 1021 PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG 1080
Query: 347 QDGKEAKAGEAPTENPAPPTQQSSA 371
GK+ GEA + P P+ + A
Sbjct: 1081 PTGKQGDRGEAGAQGPMGPSGPAGA 1105
Score = 39.3 bits (90), Expect = 0.006
Identities = 36/119 (30%), Positives = 43/119 (36%), Gaps = 24/119 (20%)
Query: 254 PHPNRIQAGEIGEMKDGVPE---GAQL---QGPVHRNPTYRPRYRSRGPPRPRPAPAVGE 307
P P + +M G E GAQL QGP+ GP PR P
Sbjct: 170 PGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPM-------------GPMGPRGPPGPAG 216
Query: 308 AEDKENQQATSG-PNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPP 365
A + Q G P +P G P R P PP P DG+ K G+A P P
Sbjct: 217 APGPQGFQGNPGEPGEP----GVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 271
Score = 38.1 bits (87), Expect = 0.013
Identities = 89/372 (23%), Positives = 118/372 (31%), Gaps = 70/372 (18%)
Query: 16 PQAPTEAAAAAPQDPAPKSPVGSGAPQA-----AAPAPAAHVAGNPGGDAAPAATGTAAA 70
P AP A P + P G+ P+ +P PA +GNPG D P A G+A A
Sbjct: 368 PGAPGAKGEAGPT--GARGPEGAQGPRGEPGTPGSPGPAG-ASGNPGTDGIPGAKGSAGA 424
Query: 71 ASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRK 130
+A A G R G Q A P+
Sbjct: 425 PGIAGAPGFPGP------------------RGPPG-------------PQGATGPLGPKG 453
Query: 131 YLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGR-----R 185
G+ F +G KG GP G P R G G
Sbjct: 454 ---QTGEPGIAGFKGEQGPKGEPGP--AGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGE 508
Query: 186 RGPP--RNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYR--PQYRQRRFPPYH 241
RG P R + G++ G + G P+ GA RP P R P
Sbjct: 509 RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD 568
Query: 242 VGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRP 301
G + +V P GE G P+GA+ Q V P + G +
Sbjct: 569 AGP----QGKVGPSG---APGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKG 621
Query: 302 ---APAVGEAEDKENQQATSGPNQPSVRRGYRR------PYNYRRRPRPPNAPSQDGKEA 352
AP + K+ + +GP P+ G R P ++ P PP P + GK
Sbjct: 622 LPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG 681
Query: 353 KAGEAPTENPAP 364
G P E AP
Sbjct: 682 DQG-VPGEAGAP 692
Score = 33.9 bits (76), Expect = 0.24
Identities = 58/238 (24%), Positives = 79/238 (33%), Gaps = 53/238 (22%)
Query: 148 GEKGAEAAN----VTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP----PRNYAGEEEEE 199
GE+GA + + GP G P EG + +G G P PR G E
Sbjct: 654 GEQGAPGPSGFQGLPGPPGPPGEGGKPGD------QGVPGEAGAPGLVGPRGERGFPGER 707
Query: 200 GSGSSEGFD-------PPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRV 252
GS ++G P TD GA P + PP G +R +
Sbjct: 708 GSPGAQGLQGPRGLPGTPGTDGP-KGASGPAGPPGAQG-------PPGLQGMPGERGAAG 759
Query: 253 LPHPNRIQAGEIGEMKDGVPEGAQ-------LQGPVHRNPTYRPRYRSRGPPRPRPAPAV 305
+ P G+ G++ + PEGA L GP+ GPP P A
Sbjct: 760 IAGPK----GDRGDVGEKGPEGAPGKDGGRGLTGPI-------------GPPGPAGANGE 802
Query: 306 GEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPA 363
++G RG P PP A Q G + + GEA + A
Sbjct: 803 KGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 860
Score = 30.4 bits (67), Expect = 2.7
Identities = 27/85 (31%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 295 GPPRPR--PAPAVGEAEDKENQ-QATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDG-- 349
GP PR P P +D N GP P R G P P PP P G
Sbjct: 1158 GPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPG 1217
Query: 350 --KEAKAGEAPTENPAPPTQQSSAE 372
A AG P E P Q A+
Sbjct: 1218 IDMSAFAGLGPREKGPDPLQYMRAD 1242
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 42.7 bits (99), Expect = 5e-04
Identities = 90/385 (23%), Positives = 119/385 (30%), Gaps = 94/385 (24%)
Query: 14 TLPQAPTEAAAAAPQ--DPAPKSPVGS----GAP----QAAAPAPAAHVAGNPGGDAAPA 63
T P P A A + + P P GS GAP + P PA AG PG D P
Sbjct: 719 TGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGF-AGPPGADGQPG 777
Query: 64 ATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAI 123
A G A AG+ + A G T +
Sbjct: 778 AKGEQGEAGQKGDAGAPGPQGPSGAPGPQGP--------------------------TGV 811
Query: 124 KKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVT-GPDGVPVEGSRYAADRRRYRRGYY 182
P+ + G F G G +N GP G P + R G
Sbjct: 812 --TGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPP 869
Query: 183 GRRRGP----PRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFP 238
GR P P GE+ E G G + P + +G R + P R + R FP
Sbjct: 870 GRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGE---RGFP 926
Query: 239 PYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPR 298
LP P+ GE G K G P + RGPP
Sbjct: 927 G-------------LPGPS----GEPG--KQGAPGASG----------------DRGPPG 951
Query: 299 PRPAPAVGEAEDKENQQATSGPNQPSVR---------RGYRRPYNYRRRPRPPNAP---S 346
P P + + ++ + G + P R RG P PP +P
Sbjct: 952 PVGPPGLTGPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAG 1011
Query: 347 QDGKEAKAGEAPTENPAPPTQQSSA 371
GK+ GEA + P P+ + A
Sbjct: 1012 PTGKQGDRGEAGAQGPMGPSGPAGA 1036
Score = 39.7 bits (91), Expect = 0.004
Identities = 57/232 (24%), Positives = 73/232 (31%), Gaps = 58/232 (25%)
Query: 138 GETVEFDVVEGEKG--AEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP-PRNYAG 194
G+ V +G+KG + ++ GP G P R RG G + P PR G
Sbjct: 25 GQDVRQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDG 84
Query: 195 EEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLP 254
E G+ G PP P +G F +
Sbjct: 85 EPGTPGNPGPPG--PPGPPG------------------------PPGLGGNFAAQ----- 113
Query: 255 HPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQ 314
AG E G G +QGP+ GP PR P A +
Sbjct: 114 -----MAGGFDEKAGGAQLGV-MQGPM-------------GPMGPRGPPGPAGAPGPQGF 154
Query: 315 QATSG-PNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPP 365
Q G P +P G P R P PP P DG+ K G+A P P
Sbjct: 155 QGNPGEPGEP----GVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 202
Score = 38.1 bits (87), Expect = 0.013
Identities = 89/372 (23%), Positives = 118/372 (31%), Gaps = 70/372 (18%)
Query: 16 PQAPTEAAAAAPQDPAPKSPVGSGAPQA-----AAPAPAAHVAGNPGGDAAPAATGTAAA 70
P AP A P + P G+ P+ +P PA +GNPG D P A G+A A
Sbjct: 299 PGAPGAKGEAGPT--GARGPEGAQGPRGEPGTPGSPGPAG-ASGNPGTDGIPGAKGSAGA 355
Query: 71 ASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRK 130
+A A G R G Q A P+
Sbjct: 356 PGIAGAPGFPGP------------------RGPPG-------------PQGATGPLGPKG 384
Query: 131 YLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGR-----R 185
G+ F +G KG GP G P R G G
Sbjct: 385 ---QTGEPGIAGFKGEQGPKGEPGP--AGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGE 439
Query: 186 RGPP--RNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYR--PQYRQRRFPPYH 241
RG P R + G++ G + G P+ GA RP P R P
Sbjct: 440 RGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGD 499
Query: 242 VGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRP 301
G + +V P GE G P+GA+ Q V P + G +
Sbjct: 500 AGP----QGKVGPSG---APGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKG 552
Query: 302 ---APAVGEAEDKENQQATSGPNQPSVRRGYRR------PYNYRRRPRPPNAPSQDGKEA 352
AP + K+ + +GP P+ G R P ++ P PP P + GK
Sbjct: 553 LPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPG 612
Query: 353 KAGEAPTENPAP 364
G P E AP
Sbjct: 613 DQG-VPGEAGAP 623
Score = 33.9 bits (76), Expect = 0.24
Identities = 58/238 (24%), Positives = 79/238 (33%), Gaps = 53/238 (22%)
Query: 148 GEKGAEAAN----VTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP----PRNYAGEEEEE 199
GE+GA + + GP G P EG + +G G P PR G E
Sbjct: 585 GEQGAPGPSGFQGLPGPPGPPGEGGKPGD------QGVPGEAGAPGLVGPRGERGFPGER 638
Query: 200 GSGSSEGFD-------PPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRV 252
GS ++G P TD GA P + PP G +R +
Sbjct: 639 GSPGAQGLQGPRGLPGTPGTDGP-KGASGPAGPPGAQG-------PPGLQGMPGERGAAG 690
Query: 253 LPHPNRIQAGEIGEMKDGVPEGAQ-------LQGPVHRNPTYRPRYRSRGPPRPRPAPAV 305
+ P G+ G++ + PEGA L GP+ GPP P A
Sbjct: 691 IAGPK----GDRGDVGEKGPEGAPGKDGGRGLTGPI-------------GPPGPAGANGE 733
Query: 306 GEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPA 363
++G RG P PP A Q G + + GEA + A
Sbjct: 734 KGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDA 791
Score = 30.4 bits (67), Expect = 2.7
Identities = 27/85 (31%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 295 GPPRPR--PAPAVGEAEDKENQ-QATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDG-- 349
GP PR P P +D N GP P R G P P PP P G
Sbjct: 1089 GPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPG 1148
Query: 350 --KEAKAGEAPTENPAPPTQQSSAE 372
A AG P E P Q A+
Sbjct: 1149 IDMSAFAGLGPREKGPDPLQYMRAD 1173
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 42.0 bits (97), Expect = 9e-04
Identities = 51/183 (27%), Positives = 63/183 (34%), Gaps = 18/183 (9%)
Query: 186 RGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGA-----RNQLRRPQYRPQYRQRRFPPY 240
RGPP G E G + G P D GA L Q P + + PP
Sbjct: 832 RGPP----GSRGERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPG 887
Query: 241 HVGQTFDRRSRVLPHPNRIQAGEIG-EMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRP 299
H G+ D R HP Q GE+G + + G P A + GP + P RGPP P
Sbjct: 888 HQGK--DGRPG---HPG--QRGELGFQGQTGPPGPAGVLGPQGKTGEVGP-LGERGPPGP 939
Query: 300 RPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPT 359
P E ++ G P G P R P P P G G+
Sbjct: 940 PGPPGEQGLPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGP 999
Query: 360 ENP 362
P
Sbjct: 1000 PGP 1002
Score = 31.2 bits (69), Expect = 1.6
Identities = 54/215 (25%), Positives = 72/215 (33%), Gaps = 29/215 (13%)
Query: 159 GPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSG 218
GP G P +D G+ G P G + GS G+ P + SG
Sbjct: 665 GPPGNPGIPGLPGSDGPLGHPGHEG-----PTGEKGAQGPPGSAGPPGYPGPRGVKGTSG 719
Query: 219 ARNQLRRPQYRPQYRQRRFPPYH--VGQTFDRRSRVLPHPN--------RIQAGEIGEMK 268
R + + + FP + VG D+ P P + QAG+ GE
Sbjct: 720 NRGLQGE---KGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPEGPKGQAGQAGE-- 774
Query: 269 DGVPEGAQLQGPVHRNPTYRPRYRSRGPPR-----PRPAPAVGEA--EDKENQQATSGPN 321
+G P A +G + P Y R P+ P P +GE K Q G
Sbjct: 775 EGPPGSAGEKGKL--GVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGER 832
Query: 322 QPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGE 356
P RG R +P P QDG GE
Sbjct: 833 GPPGSRGERGQPGATGQPGPKGDVGQDGAPGIPGE 867
Score = 29.3 bits (64), Expect = 6.0
Identities = 77/341 (22%), Positives = 96/341 (28%), Gaps = 64/341 (18%)
Query: 19 PTEAAAAAPQDPA--PKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLATA 76
P A +PA K G P A P +G PG P G A L
Sbjct: 370 PGAGEKGAKGEPAVIEKGQQFEGPPGAPGPQGVVGPSGPPGPPGFPGDPGPPGPAGLPGI 429
Query: 77 AGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVG 136
G D + T ++ ++ ++ + + QT + P + G
Sbjct: 430 PGI-DGIRGPPGTVIMMPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTG 488
Query: 137 DGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYA--G 194
V G KG E A GP G RG G GPP G
Sbjct: 489 RPGPVGLPGHPGLKGEEGAE--GPQG---------------PRGLQG-PHGPPGRVGKMG 530
Query: 195 EEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLP 254
+G+ G P DR F G P + +R HVGQ P
Sbjct: 531 RPGADGARGLPGDTGPKGDRGFDGLPG-------LPGEKGQRGDFGHVGQ---------P 574
Query: 255 HPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQ 314
P GE GE P G Q P R RG P P P V +
Sbjct: 575 GP----PGEDGERGAEGPPGPTGQA---GEPGPRGLLGPRGSPGPTGRPGVTGIDGAPGA 627
Query: 315 QATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAG 355
+ GP P P P Q G G
Sbjct: 628 KGNVGP------------------PGEPGPPGQQGNHGSQG 650
>gi|192449449 ubiquitin-conjugating enzyme E2O [Homo sapiens]
Length = 1292
Score = 42.0 bits (97), Expect = 9e-04
Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 16 PQAPTEAAAAAPQDPAPKSPVGSGAPQAA---APAPAAHVAGNPGGDAAPAA 64
P APT AA A Q PAP +P AP AA APAPA+ A P D+ P A
Sbjct: 4 PAAPTPAAPAPAQAPAP-APEAVPAPAAAPVPAPAPASDSASGPSSDSGPEA 54
Score = 29.3 bits (64), Expect = 6.0
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 29 DPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPA-ATGTAAAASLATAAGSEDAEKKVL 87
DPA +P QA APAP A A P PA A + +A+ ++ +G E +++L
Sbjct: 3 DPAAPTPAAPAPAQAPAPAPEAVPA--PAAAPVPAPAPASDSASGPSSDSGPEAGSQRLL 60
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 41.6 bits (96), Expect = 0.001
Identities = 92/362 (25%), Positives = 119/362 (32%), Gaps = 48/362 (13%)
Query: 16 PQAPTEAAAAAPQD-PAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLA 74
P P + PQ P P+ P+G P P +AG PG D P G +
Sbjct: 699 PGPPGQQGNPGPQGLPGPQGPIGP--PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEK 756
Query: 75 TAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFV-HQTAIKKNNPRKYLR 133
A G + + G VR G ++ + ED F + + R +
Sbjct: 757 GALGPPGPQGPIGYPGPRGVKGADGVRGLKG--SKGEKGEDGFPGFKGDMGLKGDRGEVG 814
Query: 134 SVGD-GETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNY 192
+G GE D EG KG GP G P + + G G Y
Sbjct: 815 QIGPRGE----DGPEGPKGR-----AGPTGDPGPSGQAGEKGKLGVPGLPG--------Y 857
Query: 193 AGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRV 252
G + +GS GF P A + GAR +P R Q R P G R
Sbjct: 858 PGRQGPKGSTGFPGF-PGANGEK--GARGVAGKPGPRGQ----RGPTGPRGSRGARGPTG 910
Query: 253 LPHPNRIQAGE--IGEMKDGVPEGAQLQGPV-HRNPTYRPRYRSRGPPRPRPAPAVGEAE 309
P P G+ G + P+G Q GPV P P GPP P
Sbjct: 911 KPGPKGTSGGDGPPGPPGERGPQGPQ--GPVGFPGPKGPP-----GPPGKDGLPGHPGQR 963
Query: 310 DKENQQATSGPNQPSV------RRGYRRPYNYRRRPRPPNAPSQDGKEAKAG-EAPTENP 362
+ Q +GP P G P R P PP P + G AG E +P
Sbjct: 964 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1023
Query: 363 AP 364
P
Sbjct: 1024 GP 1025
Score = 33.5 bits (75), Expect = 0.32
Identities = 21/72 (29%), Positives = 27/72 (37%)
Query: 295 GPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKA 354
G P P VG + ++ GP PS G P R P A + G++
Sbjct: 1333 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1392
Query: 355 GEAPTENPAPPT 366
GEA E P T
Sbjct: 1393 GEAGAEGPPGKT 1404
Score = 32.7 bits (73), Expect = 0.54
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 296 PPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAG 355
P RP P G A +K GP P+ R G + P P +P +DG + + G
Sbjct: 1086 PGRPGPQGPPGPAGEK-GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG 1144
Query: 356 E 356
E
Sbjct: 1145 E 1145
Score = 32.0 bits (71), Expect = 0.92
Identities = 59/234 (25%), Positives = 79/234 (33%), Gaps = 35/234 (14%)
Query: 148 GEKGAEA----ANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP-----PRNYAGEEE- 197
GEKG + A + G DG P + + G G + GP PR G +
Sbjct: 724 GEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ-GPIGYPGPRGVKGADGV 782
Query: 198 -----EEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRV 252
+G +GF D G R ++ + R + P G T D
Sbjct: 783 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEG-PKGRAGPTGD----- 836
Query: 253 LPHPNRIQAGEIGEMK-DGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDK 311
P P+ QAGE G++ G+P QGP + T P G P K
Sbjct: 837 -PGPSG-QAGEKGKLGVPGLPGYPGRQGP--KGSTGFP-----GFPGANGEKGARGVAGK 887
Query: 312 ENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPP 365
+ GP P RG R P +P P DG GE + P P
Sbjct: 888 PGPRGQRGPTGPRGSRGARGPTG---KPGPKGTSGGDGPPGPPGERGPQGPQGP 938
Score = 30.0 bits (66), Expect = 3.5
Identities = 53/226 (23%), Positives = 73/226 (32%), Gaps = 27/226 (11%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGF 207
GE+G+ A GP G+P +G G + P+ AG + +G G
Sbjct: 1072 GERGS--AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG--PQGPAGRDGVQGPVGLPGP 1127
Query: 208 DPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEM 267
PA G + ++ P + G D+ P P +Q G +G
Sbjct: 1128 AGPAGSPGEDGDKGEIGEPGQK-------------GSKGDKGENGPPGPPGLQ-GPVGAP 1173
Query: 268 K----DGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQP 323
DG P QG + R GPP P + ++ + GP P
Sbjct: 1174 GIAGGDGEPGPRGQQGMFGQKGDEGAR-GFPGPPGPIGLQGLPGPPGEKGENGDVGPMGP 1232
Query: 324 SVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGE--APTE--NPAPP 365
G R P P P G GE P E NP PP
Sbjct: 1233 PGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1278
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 41.6 bits (96), Expect = 0.001
Identities = 92/362 (25%), Positives = 119/362 (32%), Gaps = 48/362 (13%)
Query: 16 PQAPTEAAAAAPQD-PAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLA 74
P P + PQ P P+ P+G P P +AG PG D P G +
Sbjct: 648 PGPPGQQGNPGPQGLPGPQGPIGP--PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEK 705
Query: 75 TAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFV-HQTAIKKNNPRKYLR 133
A G + + G VR G ++ + ED F + + R +
Sbjct: 706 GALGPPGPQGPIGYPGPRGVKGADGVRGLKG--SKGEKGEDGFPGFKGDMGLKGDRGEVG 763
Query: 134 SVGD-GETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNY 192
+G GE D EG KG GP G P + + G G Y
Sbjct: 764 QIGPRGE----DGPEGPKGR-----AGPTGDPGPSGQAGEKGKLGVPGLPG--------Y 806
Query: 193 AGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRV 252
G + +GS GF P A + GAR +P R Q R P G R
Sbjct: 807 PGRQGPKGSTGFPGF-PGANGEK--GARGVAGKPGPRGQ----RGPTGPRGSRGARGPTG 859
Query: 253 LPHPNRIQAGE--IGEMKDGVPEGAQLQGPV-HRNPTYRPRYRSRGPPRPRPAPAVGEAE 309
P P G+ G + P+G Q GPV P P GPP P
Sbjct: 860 KPGPKGTSGGDGPPGPPGERGPQGPQ--GPVGFPGPKGPP-----GPPGKDGLPGHPGQR 912
Query: 310 DKENQQATSGPNQPSV------RRGYRRPYNYRRRPRPPNAPSQDGKEAKAG-EAPTENP 362
+ Q +GP P G P R P PP P + G AG E +P
Sbjct: 913 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 972
Query: 363 AP 364
P
Sbjct: 973 GP 974
Score = 33.5 bits (75), Expect = 0.32
Identities = 21/72 (29%), Positives = 27/72 (37%)
Query: 295 GPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKA 354
G P P VG + ++ GP PS G P R P A + G++
Sbjct: 1282 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1341
Query: 355 GEAPTENPAPPT 366
GEA E P T
Sbjct: 1342 GEAGAEGPPGKT 1353
Score = 32.7 bits (73), Expect = 0.54
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 296 PPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAG 355
P RP P G A +K GP P+ R G + P P +P +DG + + G
Sbjct: 1035 PGRPGPQGPPGPAGEK-GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG 1093
Query: 356 E 356
E
Sbjct: 1094 E 1094
Score = 32.0 bits (71), Expect = 0.92
Identities = 59/234 (25%), Positives = 79/234 (33%), Gaps = 35/234 (14%)
Query: 148 GEKGAEA----ANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP-----PRNYAGEEE- 197
GEKG + A + G DG P + + G G + GP PR G +
Sbjct: 673 GEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ-GPIGYPGPRGVKGADGV 731
Query: 198 -----EEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRV 252
+G +GF D G R ++ + R + P G T D
Sbjct: 732 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEG-PKGRAGPTGD----- 785
Query: 253 LPHPNRIQAGEIGEMK-DGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDK 311
P P+ QAGE G++ G+P QGP + T P G P K
Sbjct: 786 -PGPSG-QAGEKGKLGVPGLPGYPGRQGP--KGSTGFP-----GFPGANGEKGARGVAGK 836
Query: 312 ENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPP 365
+ GP P RG R P +P P DG GE + P P
Sbjct: 837 PGPRGQRGPTGPRGSRGARGPTG---KPGPKGTSGGDGPPGPPGERGPQGPQGP 887
Score = 30.0 bits (66), Expect = 3.5
Identities = 53/226 (23%), Positives = 73/226 (32%), Gaps = 27/226 (11%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGF 207
GE+G+ A GP G+P +G G + P+ AG + +G G
Sbjct: 1021 GERGS--AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG--PQGPAGRDGVQGPVGLPGP 1076
Query: 208 DPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEM 267
PA G + ++ P + G D+ P P +Q G +G
Sbjct: 1077 AGPAGSPGEDGDKGEIGEPGQK-------------GSKGDKGENGPPGPPGLQ-GPVGAP 1122
Query: 268 K----DGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQP 323
DG P QG + R GPP P + ++ + GP P
Sbjct: 1123 GIAGGDGEPGPRGQQGMFGQKGDEGAR-GFPGPPGPIGLQGLPGPPGEKGENGDVGPMGP 1181
Query: 324 SVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGE--APTE--NPAPP 365
G R P P P G GE P E NP PP
Sbjct: 1182 PGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1227
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 41.6 bits (96), Expect = 0.001
Identities = 92/362 (25%), Positives = 119/362 (32%), Gaps = 48/362 (13%)
Query: 16 PQAPTEAAAAAPQD-PAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAAASLA 74
P P + PQ P P+ P+G P P +AG PG D P G +
Sbjct: 687 PGPPGQQGNPGPQGLPGPQGPIGP--PGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEK 744
Query: 75 TAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFV-HQTAIKKNNPRKYLR 133
A G + + G VR G ++ + ED F + + R +
Sbjct: 745 GALGPPGPQGPIGYPGPRGVKGADGVRGLKG--SKGEKGEDGFPGFKGDMGLKGDRGEVG 802
Query: 134 SVGD-GETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNY 192
+G GE D EG KG GP G P + + G G Y
Sbjct: 803 QIGPRGE----DGPEGPKGR-----AGPTGDPGPSGQAGEKGKLGVPGLPG--------Y 845
Query: 193 AGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRV 252
G + +GS GF P A + GAR +P R Q R P G R
Sbjct: 846 PGRQGPKGSTGFPGF-PGANGEK--GARGVAGKPGPRGQ----RGPTGPRGSRGARGPTG 898
Query: 253 LPHPNRIQAGE--IGEMKDGVPEGAQLQGPV-HRNPTYRPRYRSRGPPRPRPAPAVGEAE 309
P P G+ G + P+G Q GPV P P GPP P
Sbjct: 899 KPGPKGTSGGDGPPGPPGERGPQGPQ--GPVGFPGPKGPP-----GPPGKDGLPGHPGQR 951
Query: 310 DKENQQATSGPNQPSV------RRGYRRPYNYRRRPRPPNAPSQDGKEAKAG-EAPTENP 362
+ Q +GP P G P R P PP P + G AG E +P
Sbjct: 952 GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP 1011
Query: 363 AP 364
P
Sbjct: 1012 GP 1013
Score = 33.5 bits (75), Expect = 0.32
Identities = 21/72 (29%), Positives = 27/72 (37%)
Query: 295 GPPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKA 354
G P P VG + ++ GP PS G P R P A + G++
Sbjct: 1321 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1380
Query: 355 GEAPTENPAPPT 366
GEA E P T
Sbjct: 1381 GEAGAEGPPGKT 1392
Score = 32.7 bits (73), Expect = 0.54
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 296 PPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAG 355
P RP P G A +K GP P+ R G + P P +P +DG + + G
Sbjct: 1074 PGRPGPQGPPGPAGEK-GAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIG 1132
Query: 356 E 356
E
Sbjct: 1133 E 1133
Score = 32.0 bits (71), Expect = 0.92
Identities = 59/234 (25%), Positives = 79/234 (33%), Gaps = 35/234 (14%)
Query: 148 GEKGAEA----ANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP-----PRNYAGEEE- 197
GEKG + A + G DG P + + G G + GP PR G +
Sbjct: 712 GEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQ-GPIGYPGPRGVKGADGV 770
Query: 198 -----EEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRV 252
+G +GF D G R ++ + R + P G T D
Sbjct: 771 RGLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGQIGPRGEDGPEG-PKGRAGPTGD----- 824
Query: 253 LPHPNRIQAGEIGEMK-DGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDK 311
P P+ QAGE G++ G+P QGP + T P G P K
Sbjct: 825 -PGPSG-QAGEKGKLGVPGLPGYPGRQGP--KGSTGFP-----GFPGANGEKGARGVAGK 875
Query: 312 ENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPP 365
+ GP P RG R P +P P DG GE + P P
Sbjct: 876 PGPRGQRGPTGPRGSRGARGPTG---KPGPKGTSGGDGPPGPPGERGPQGPQGP 926
Score = 30.0 bits (66), Expect = 3.5
Identities = 53/226 (23%), Positives = 73/226 (32%), Gaps = 27/226 (11%)
Query: 148 GEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEEEEGSGSSEGF 207
GE+G+ A GP G+P +G G + P+ AG + +G G
Sbjct: 1060 GERGS--AGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKG--PQGPAGRDGVQGPVGLPGP 1115
Query: 208 DPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEM 267
PA G + ++ P + G D+ P P +Q G +G
Sbjct: 1116 AGPAGSPGEDGDKGEIGEPGQK-------------GSKGDKGENGPPGPPGLQ-GPVGAP 1161
Query: 268 K----DGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQP 323
DG P QG + R GPP P + ++ + GP P
Sbjct: 1162 GIAGGDGEPGPRGQQGMFGQKGDEGAR-GFPGPPGPIGLQGLPGPPGEKGENGDVGPMGP 1220
Query: 324 SVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGE--APTE--NPAPP 365
G R P P P G GE P E NP PP
Sbjct: 1221 PGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1266
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 40.4 bits (93), Expect = 0.003
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 19 PTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGG--DAAPAATGTAAAASLATA 76
P AA + P PAP +P + P APA A G+P G AAPA AAA + +A
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSA 309
Query: 77 AGS 79
+
Sbjct: 310 GAA 312
Score = 34.7 bits (78), Expect = 0.14
Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 16 PQAPTEAAAAAPQDPAP--KSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAA------TGT 67
P AP E A A +P P ++ G G PQ P P+ P G A PAA G+
Sbjct: 75 PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGP-PSPRRPLVPAGPAPPAAKLRPPPEGS 133
Query: 68 AAA-----ASLATAAGSEDA 82
A + A+ A AAG E A
Sbjct: 134 AGSCAPVPAAAAVAAGPEPA 153
Score = 34.7 bits (78), Expect = 0.14
Identities = 23/50 (46%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 14 TLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPA 63
T+ Q P AAAP PA SP AAPAPAA A P APA
Sbjct: 236 TVIQTPPFVGAAAPPAPAAPSP-------PAAPAPAAPAAAPPPPPPAPA 278
Score = 34.3 bits (77), Expect = 0.19
Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 16 PQAPTEAA-AAAPQDPAP------KSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTA 68
P AP AA AAAP P P + P P AAPA A GG A A
Sbjct: 258 PAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAP 317
Query: 69 AAASLATAAG 78
AA A +G
Sbjct: 318 AAGGPAGVSG 327
Score = 33.1 bits (74), Expect = 0.41
Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 16 PQAPTEAAAAAPQD----PAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAAA 70
P+ P A AP P P+ GS AP AA A AA P G A PA AA
Sbjct: 110 PRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAA 168
Score = 32.7 bits (73), Expect = 0.54
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 19 PTEAAAAAPQDPAPKSPVGSGAPQA----AAPAPAAHVAGNPG-GDAAPAATGTA 68
P AA AA +PAP P P A A P P PG G PA G A
Sbjct: 141 PAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAA 195
Score = 32.0 bits (71), Expect = 0.92
Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 16 PQAPTEAAAAAPQDPAPKS------PVGSGAPQAAAPAPAAHVAGNPGGDAAPAATGTAA 69
P P+ P PAP + P GS A PA AA AG A PA A
Sbjct: 105 PGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAK--PAG 162
Query: 70 AASLATAAG 78
A+LA AG
Sbjct: 163 PAALAARAG 171
Score = 31.6 bits (70), Expect = 1.2
Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 13 TTLPQAPTEAAA----AAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGG---------- 58
T P P AAA +A PAP G A + P P A A G
Sbjct: 292 TAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVV 351
Query: 59 DAAPAATGTAAAASLATAAGS 79
AAP A T AA+ A+ A S
Sbjct: 352 QAAPPAAQTLAASGPASTAAS 372
Score = 30.8 bits (68), Expect = 2.0
Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 16 PQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPA-AHVAGNPGGDAAPAATGTAAAA 71
P P AAP P P + G+ A APA A AG P G + G AAAA
Sbjct: 284 PGHPAGPPTAAPAVPPPAAAQNGGS---AGAAPAPAPAAGGPAGVSGQPGPGAAAAA 337
Score = 29.3 bits (64), Expect = 6.0
Identities = 23/54 (42%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 16 PQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPA-PAAHVAGNPGGDAAPAATGTA 68
P+ P AAAA A + V SG+P AA A PAA G PG P G A
Sbjct: 45 PRTPEVRAAAAG---ALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRA 95
Score = 29.3 bits (64), Expect = 6.0
Identities = 18/64 (28%), Positives = 21/64 (32%)
Query: 4 AGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPA 63
AG A E A A P PA + + + A P P PG A P
Sbjct: 134 AGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPG 193
Query: 64 ATGT 67
A T
Sbjct: 194 AAQT 197
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 40.4 bits (93), Expect = 0.003
Identities = 25/94 (26%), Positives = 39/94 (41%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP T +A+ P P + S + A P P ++ G A
Sbjct: 4051 VTSTSSASTGDTTPLPVTDTSSASTGHATPLPVTDTSSASTGHATPLPVTSLSSVSTGHA 4110
Query: 61 APAATGTAAAASLATAAGSEDAEKKVLATKVLGT 94
P A +A +AS ++ E + T L T
Sbjct: 4111 TPLAVSSATSASTVSSDSPLKMETPGMTTPSLKT 4144
Score = 36.2 bits (82), Expect = 0.049
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP T +A+ P P + S + A P P ++ GD
Sbjct: 2995 VTDTSSASTGQATALPVTSTSSASTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDT 3054
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 3055 TPLPVTSPSSASTGHA 3070
Score = 34.7 bits (78), Expect = 0.14
Identities = 19/76 (25%), Positives = 31/76 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T LP +A+ P P + S + A P P ++ GD
Sbjct: 3635 VTDASSVSTGHATPLPVTDASSASTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDT 3694
Query: 61 APAATGTAAAASLATA 76
P A++AS A
Sbjct: 3695 TPLPVTDASSASTGHA 3710
Score = 34.3 bits (77), Expect = 0.19
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 7 ATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATG 66
A+T T+TLP +A+ P P + S + A P P ++ GD P
Sbjct: 3369 ASTGDTSTLPVTGASSASTGHATPLPVTDTSSVSTGHATPLPVTSLSSVSTGDTTPLPVT 3428
Query: 67 TAAAASLATA 76
A++AS A
Sbjct: 3429 DASSASTGQA 3438
Score = 33.9 bits (76), Expect = 0.24
Identities = 20/76 (26%), Positives = 31/76 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP T +A+ P P + + S + P P + G A
Sbjct: 3011 VTSTSSASTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHA 3070
Query: 61 APAATGTAAAASLATA 76
P A++AS A
Sbjct: 3071 TPLLVTDASSASTGQA 3086
Score = 33.5 bits (75), Expect = 0.32
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 7 ATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATG 66
ATT TT LP +A+ P P + + S + P P + G A+P
Sbjct: 1689 ATTDDTTRLPVTDVSSASTGQATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHASPLLVT 1748
Query: 67 TAAAASLATA 76
A++AS A
Sbjct: 1749 DASSASTGQA 1758
Score = 33.5 bits (75), Expect = 0.32
Identities = 19/76 (25%), Positives = 31/76 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T+LP T +A+ P P + S + A P P + G A
Sbjct: 2163 VTDTSSASTGHATSLPVTDTSSASTGHATPLPVTDTSSASTGQATPLPVTSPSSASTGHA 2222
Query: 61 APAATGTAAAASLATA 76
P ++AS A
Sbjct: 2223 IPLLVTDTSSASTGQA 2238
Score = 33.5 bits (75), Expect = 0.32
Identities = 19/76 (25%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP T +A+ P P + S + A P P + GD
Sbjct: 2563 VTDTSAASTGHATPLPVTSTSSASTGDTTPLPVTDTYSASTGQATPLPVTDTSSASTGDT 2622
Query: 61 APAATGTAAAASLATA 76
P ++AS A
Sbjct: 2623 TPLPVTDTSSASTGHA 2638
Score = 32.7 bits (73), Expect = 0.54
Identities = 19/76 (25%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP T +A+ P P + S + P P + GD
Sbjct: 1571 VTSPSSASTGHTTPLPVTDTSSASKGDTTPLPVTSPSSASTGHTTPLPVTDTSSASTGDT 1630
Query: 61 APAATGTAAAASLATA 76
P A++ S A
Sbjct: 1631 TPLPVTNASSLSTGHA 1646
Score = 32.7 bits (73), Expect = 0.54
Identities = 18/72 (25%), Positives = 31/72 (43%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP T +A+ P P + S + A P P + + G A
Sbjct: 2595 VTDTYSASTGQATPLPVTDTSSASTGDTTPLPVTDTSSASTGHATPLPVTNTSSVSTGHA 2654
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 2655 TPLHVTSPSSAS 2666
Score = 32.7 bits (73), Expect = 0.54
Identities = 17/62 (27%), Positives = 27/62 (43%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A A+T TT LP T +A+ P P + + S + P P + G A
Sbjct: 3651 VTDASSASTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTDASSASTGHA 3710
Query: 61 AP 62
P
Sbjct: 3711 TP 3712
Score = 32.3 bits (72), Expect = 0.70
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 10/93 (10%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T LP T +A+ P P + S + A P P + G A
Sbjct: 4035 VTDASSVSTGHGTPLPVTSTSSASTGDTTPLPVTDTSSASTGHATPLPVTDTSSASTGHA 4094
Query: 61 AP--------AATG--TAAAASLATAAGSEDAE 83
P +TG T A S AT+A + ++
Sbjct: 4095 TPLPVTSLSSVSTGHATPLAVSSATSASTVSSD 4127
Score = 32.0 bits (71), Expect = 0.92
Identities = 19/76 (25%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP T +A+ P P + + S + P P + G A
Sbjct: 2019 VTSLSSASTGDTTPLPVTDTSSASTGQDTPLPVTSLSSVSTGDTTPLPVTSPSSASTGHA 2078
Query: 61 APAATGTAAAASLATA 76
P A++ S A
Sbjct: 2079 TPLLVTDASSVSTGHA 2094
Score = 32.0 bits (71), Expect = 0.92
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T T LP T +A+ P P + S + P P + GD
Sbjct: 3283 VTSPSSASTGHATPLPVTSTSSASTGHATPVPVTSTSSASTGHTTPLPVTDTSSASTGDT 3342
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 3343 TPLPVTSPSSAS 3354
Score = 32.0 bits (71), Expect = 0.92
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A A+T T LP + + P P + S + A P P ++ GD
Sbjct: 3955 VTDASSASTGHATPLPLTSLSSVSTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDT 4014
Query: 61 APAATGTAAAAS 72
P ++AS
Sbjct: 4015 TPLPVTIPSSAS 4026
Score = 31.6 bits (70), Expect = 1.2
Identities = 18/76 (23%), Positives = 28/76 (36%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP T +A+ P P + S + P P + G A
Sbjct: 2579 VTSTSSASTGDTTPLPVTDTYSASTGQATPLPVTDTSSASTGDTTPLPVTDTSSASTGHA 2638
Query: 61 APAATGTAAAASLATA 76
P ++ S A
Sbjct: 2639 TPLPVTNTSSVSTGHA 2654
Score = 31.6 bits (70), Expect = 1.2
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAP--------APAAHV 52
+++ A+T TT LP T +A+ P P + S + A P A H
Sbjct: 2611 VTDTSSASTGDTTPLPVTDTSSASTGHATPLPVTNTSSVSTGHATPLHVTSPSSASTGHT 2670
Query: 53 AGNPGGDAAPAATGTAAAASLATAA 77
P DA+ +TG A + + A+
Sbjct: 2671 TPLPVTDASSVSTGHATSLPVTDAS 2695
Score = 31.6 bits (70), Expect = 1.2
Identities = 18/76 (23%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T LP T +A+ P + S + A P P ++ GD
Sbjct: 3459 VTDASSVSTGHATPLPVTDTSSASTGDTTRLPVTDTSSASTGQATPLPVTSLSSVSTGDT 3518
Query: 61 APAATGTAAAASLATA 76
P A++ S A
Sbjct: 3519 TPLLVTDASSVSTGHA 3534
Score = 31.2 bits (69), Expect = 1.6
Identities = 18/72 (25%), Positives = 27/72 (37%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T T+LP T AA+ P P + S + P P G A
Sbjct: 2547 VTSPSSASTGHATSLPVTDTSAASTGHATPLPVTSTSSASTGDTTPLPVTDTYSASTGQA 2606
Query: 61 APAATGTAAAAS 72
P ++AS
Sbjct: 2607 TPLPVTDTSSAS 2618
Score = 31.2 bits (69), Expect = 1.6
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T LP + + P P + S + A P P ++ GD
Sbjct: 2755 VTDASSVSTGHATPLPLTSLSSVSTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDT 2814
Query: 61 APAATGTAAAASLATA 76
P ++AS A
Sbjct: 2815 TPLPVTDTSSASTGHA 2830
Score = 31.2 bits (69), Expect = 1.6
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 7 ATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATG 66
A+T TT LP T +A+ P P + S + P V+ G A P
Sbjct: 3753 ASTGDTTPLPVTDTSSASTRHATPLPVTDTSSASTDDTTRLPVTDVSSASTGHATPLPVT 3812
Query: 67 TAAAAS 72
+ ++AS
Sbjct: 3813 STSSAS 3818
Score = 30.8 bits (68), Expect = 2.0
Identities = 17/76 (22%), Positives = 31/76 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T+LP T + + P + S + A P P ++ GD
Sbjct: 1123 VTDTSSASTGHATSLPVTDTSSVSTGHTTPLHVTDASSASTGQATPLPVTSLSSVSTGDT 1182
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 1183 TPLPVTSPSSASTGHA 1198
Score = 30.8 bits (68), Expect = 2.0
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP T + + P P + S + A P P + G A
Sbjct: 3251 VTDISSASTGQATPLPVTNTSSVSTGDTMPLPVTSPSSASTGHATPLPVTSTSSASTGHA 3310
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 3311 TPVPVTSTSSAS 3322
Score = 30.8 bits (68), Expect = 2.0
Identities = 18/76 (23%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP T +A+ P + V S + A P P + GD
Sbjct: 3763 VTDTSSASTRHATPLPVTDTSSASTDDTTRLPVTDVSSASTGHATPLPVTSTSSASTGDT 3822
Query: 61 APAATGTAAAASLATA 76
P ++ S A
Sbjct: 3823 TPLPVTDTSSVSTGHA 3838
Score = 30.8 bits (68), Expect = 2.0
Identities = 17/76 (22%), Positives = 28/76 (36%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T LP T + + P P + S + A P P + GD
Sbjct: 3859 VTDTSSVSTGHATPLPVTSTSSVSTGHATPLPVTSPSSASTGHATPVPVTSTSSASTGDT 3918
Query: 61 APAATGTAAAASLATA 76
P A++ S A
Sbjct: 3919 TPLPVTNASSLSTGHA 3934
Score = 30.4 bits (67), Expect = 2.7
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T TT LP T +A+ P + S + A P P ++ GD
Sbjct: 1267 VTDTSSVSTGDTTPLPVTSTSSASTGHVTPLHVTSPSSASTGHATPLPVTSLSSASTGDT 1326
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 1327 MPLPVTSPSSAS 1338
Score = 30.4 bits (67), Expect = 2.7
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T TT LP T +A+ P + S + A P P ++ GD
Sbjct: 1475 VTDTSSVSTGDTTPLPVTSTSSASTGHVTPLHVTSPSSASTGHATPLPVTSLSSASTGDT 1534
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 1535 MPLPVTSPSSAS 1546
Score = 30.4 bits (67), Expect = 2.7
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T+LP + + P P + S + A P P ++ GD
Sbjct: 2723 VTDASSVSTGHATSLPVTDASSVSTGHATPLPVTDASSVSTGHATPLPLTSLSSVSTGDT 2782
Query: 61 APAATGTAAAASLATA 76
P ++AS A
Sbjct: 2783 TPLPVTDTSSASTGQA 2798
Score = 30.4 bits (67), Expect = 2.7
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T TT LP T +A+ P P + S + P P + G
Sbjct: 3539 VTDTSSASTGDTTRLPVTDTSSASTGQATPLPVTIPSSSSSGHTTPLPVTSTSSVSTGHV 3598
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 3599 TPLHVTSPSSAS 3610
Score = 30.0 bits (66), Expect = 3.5
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T LP + + P P + S + A P P ++ GD
Sbjct: 1971 VTDASSVSTGHATPLPVTDASSVSTGHATPLPVTDTSSVSTGQATPLPVTSLSSASTGDT 2030
Query: 61 APAATGTAAAAS 72
P ++AS
Sbjct: 2031 TPLPVTDTSSAS 2042
Score = 30.0 bits (66), Expect = 3.5
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T+LP T +A+ P + S + A P P + G A
Sbjct: 2147 VTDTSSVSTGHATSLPVTDTSSASTGHATSLPVTDTSSASTGHATPLPVTDTSSASTGQA 2206
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 2207 TPLPVTSPSSASTGHA 2222
Score = 30.0 bits (66), Expect = 3.5
Identities = 17/72 (23%), Positives = 30/72 (41%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A A+T T LP +A+ P P + S + A P + GD
Sbjct: 2307 VTDASSASTGHATPLPVTSLSSASTGDTTPLPVTSPSSASTGHATPLHVTDASSVSTGDT 2366
Query: 61 APAATGTAAAAS 72
P ++++AS
Sbjct: 2367 TPLPVTSSSSAS 2378
Score = 30.0 bits (66), Expect = 3.5
Identities = 19/89 (21%), Positives = 32/89 (35%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ +T TT LP T +A+ P P + + S + P P + G A
Sbjct: 2771 LTSLSSVSTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTDTSSASTGHA 2830
Query: 61 APAATGTAAAASLATAAGSEDAEKKVLAT 89
++AS A D + +T
Sbjct: 2831 TSLPVTDTSSASTGHATPLPDTDTSSAST 2859
Score = 30.0 bits (66), Expect = 3.5
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAP--------AAHV 52
++ A+T T LP T +A+ P P + + S + P P H
Sbjct: 2931 VTSPSSASTGHATPLPVTDTSSASTGHATPLPVTSLSSVSTGDTTPLPVTSPSSASTGHT 2990
Query: 53 AGNPGGDAAPAATGTAAAASLATAAGSEDAE 83
P D + A+TG A A + + + + +
Sbjct: 2991 TPLPVTDTSSASTGQATALPVTSTSSASTGD 3021
Score = 29.6 bits (65), Expect = 4.6
Identities = 16/72 (22%), Positives = 27/72 (37%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP + + P P + S + P P + GD
Sbjct: 1539 VTSPSSASTGDTTPLPVTDASSVSTGHTTPLPVTSPSSASTGHTTPLPVTDTSSASKGDT 1598
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 1599 TPLPVTSPSSAS 1610
Score = 29.6 bits (65), Expect = 4.6
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+ TT LP +A+ P P + S + P P + + G A
Sbjct: 1587 VTDTSSASKGDTTPLPVTSPSSASTGHTTPLPVTDTSSASTGDTTPLPVTNASSLSTGHA 1646
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 1647 TPLHVTSPSSASTGHA 1662
Score = 29.6 bits (65), Expect = 4.6
Identities = 16/76 (21%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T LP +A+ P P + S + P P ++ GD
Sbjct: 2003 VTDTSSVSTGQATPLPVTSLSSASTGDTTPLPVTDTSSASTGQDTPLPVTSLSSVSTGDT 2062
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 2063 TPLPVTSPSSASTGHA 2078
Score = 29.6 bits (65), Expect = 4.6
Identities = 16/76 (21%), Positives = 28/76 (36%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T LP + + P P + S + A P P ++ GD
Sbjct: 3395 VTDTSSVSTGHATPLPVTSLSSVSTGDTTPLPVTDASSASTGQATPLPVTSLSSVSTGDT 3454
Query: 61 APAATGTAAAASLATA 76
P A++ S A
Sbjct: 3455 TPLLVTDASSVSTGHA 3470
Score = 29.6 bits (65), Expect = 4.6
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A A+T T LP + + P P + S + A P P ++ GD
Sbjct: 3699 VTDASSASTGHATPLPVTIPSSVSTGDTMPLPVTSPSSASTGHATPLPVTGLSSASTGDT 3758
Query: 61 APAATGTAAAAS 72
P ++AS
Sbjct: 3759 TPLPVTDTSSAS 3770
Score = 29.3 bits (64), Expect = 6.0
Identities = 16/76 (21%), Positives = 28/76 (36%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T LP +A+ P P + S + P P ++ GD
Sbjct: 1027 VTDTSSESTGHVTPLPVTSFSSASTGDSTPLPVTDTSSASTGHVTPLPVTSLSSASTGDT 1086
Query: 61 APAATGTAAAASLATA 76
P ++AS A
Sbjct: 1087 TPLPVTDTSSASTGHA 1102
Score = 29.3 bits (64), Expect = 6.0
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP + + P + S + A P P ++ GD
Sbjct: 1331 VTSPSSASTGDTTPLPVTDASSVSTGHTTPLHVTDASSASTGQATPLPVTSLSSVSTGDT 1390
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 1391 TPLPVTSPSSASTGHA 1406
Score = 29.3 bits (64), Expect = 6.0
Identities = 18/77 (23%), Positives = 30/77 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T T LP +A P + V S + A P P ++ GD
Sbjct: 1667 VTSTSSASTGHATPLPVTGLSSATTDDTTRLPVTDVSSASTGQATPLPVTSLSSVSTGDT 1726
Query: 61 APAATGTAAAASLATAA 77
P + ++AS A+
Sbjct: 1727 TPLPVTSPSSASTGHAS 1743
Score = 29.3 bits (64), Expect = 6.0
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T T+LP +A+ P P + S + P P + P G A
Sbjct: 1907 VTDASSVSTGHATSLPVTSLSSASTGDTTPLPVTSPSSASSGHTTPLPVTDASSVPTGHA 1966
Query: 61 APAATGTAAAASLATA 76
A++ S A
Sbjct: 1967 TSLPVTDASSVSTGHA 1982
Score = 29.3 bits (64), Expect = 6.0
Identities = 17/76 (22%), Positives = 27/76 (35%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ +T TT LP +A+ P P + S + A P + GD
Sbjct: 2963 VTSLSSVSTGDTTPLPVTSPSSASTGHTTPLPVTDTSSASTGQATALPVTSTSSASTGDT 3022
Query: 61 APAATGTAAAASLATA 76
P ++AS A
Sbjct: 3023 TPLPVTDTSSASTGQA 3038
Score = 29.3 bits (64), Expect = 6.0
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP + + P P + S + A P P + GD
Sbjct: 3667 VTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTDASSASTGHATPLPVTIPSSVSTGDT 3726
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 3727 MPLPVTSPSSASTGHA 3742
Score = 29.3 bits (64), Expect = 6.0
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T TT LP +A+ P P + S + P P + G A
Sbjct: 3779 VTDTSSASTDDTTRLPVTDVSSASTGHATPLPVTSTSSASTGDTTPLPVTDTSSVSTGHA 3838
Query: 61 A--PAATGTAAAASLAT 75
P + ++A+ AT
Sbjct: 3839 TSLPVTSRSSASTGHAT 3855
Score = 29.3 bits (64), Expect = 6.0
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T T LP T + + P P + S + A P P + G A
Sbjct: 3843 VTSRSSASTGHATPLPVTDTSSVSTGHATPLPVTSTSSVSTGHATPLPVTSPSSASTGHA 3902
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 3903 TPVPVTSTSSAS 3914
Score = 28.9 bits (63), Expect = 7.8
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T+LP T + + P P + S + A P + G
Sbjct: 1091 VTDTSSASTGHATSLPVTDTSSVSTGHTTPLPVTDTSSASTGHATSLPVTDTSSVSTGHT 1150
Query: 61 APAATGTAAAASLATA 76
P A++AS A
Sbjct: 1151 TPLHVTDASSASTGQA 1166
Score = 28.9 bits (63), Expect = 7.8
Identities = 19/76 (25%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP T +A+ P P + S + A P + G A
Sbjct: 1603 VTSPSSASTGHTTPLPVTDTSSASTGDTTPLPVTNASSLSTGHATPLHVTSPSSASTGHA 1662
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 1663 TPLPVTSTSSASTGHA 1678
Score = 28.9 bits (63), Expect = 7.8
Identities = 17/72 (23%), Positives = 28/72 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T LP +A+ P + V S + A P P + GD
Sbjct: 1763 VTDTSSVSTAHATPLPVTGLSSASTDDTTRLPVTDVSSASTGQAIPLPVTSPSSASTGDT 1822
Query: 61 APAATGTAAAAS 72
P A++AS
Sbjct: 1823 TPLPVTDASSAS 1834
Score = 28.9 bits (63), Expect = 7.8
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ A+T TT LP +A++ P P + A+ P H P DA
Sbjct: 1923 VTSLSSASTGDTTPLPVTSPSSASSGHTTPLPVTD--------ASSVPTGHATSLPVTDA 1974
Query: 61 APAATGTAAAASLATAA 77
+ +TG A + A+
Sbjct: 1975 SSVSTGHATPLPVTDAS 1991
Score = 28.9 bits (63), Expect = 7.8
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP T +A+ P P + S + A P + G A
Sbjct: 2179 VTDTSSASTGHATPLPVTDTSSASTGQATPLPVTSPSSASTGHAIPLLVTDTSSASTGQA 2238
Query: 61 APAATGTAAAAS 72
P + ++AS
Sbjct: 2239 TPLPVTSLSSAS 2250
Score = 28.9 bits (63), Expect = 7.8
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T T LP +A+ P P + S + A P ++ GD
Sbjct: 2227 VTDTSSASTGQATPLPVTSLSSASTGDTTPLPVTDASSVSTGHATSLPVTSLSSVSTGDT 2286
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 2287 TPLPVTSPSSASTGHA 2302
Score = 28.9 bits (63), Expect = 7.8
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
++ +T TT LP +A+ P + S + A P P ++ GD
Sbjct: 2275 VTSLSSVSTGDTTPLPVTSPSSASTGHATPLHVTDASSASTGHATPLPVTSLSSASTGDT 2334
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 2335 TPLPVTSPSSASTGHA 2350
Score = 28.9 bits (63), Expect = 7.8
Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++A +T TT LP + +A++ P P + S + P P + G A
Sbjct: 2355 VTDASSVSTGDTTPLPVTSSSSASSGHTTPLPVTDASSASTGDTTPLPVTDTSSASTGHA 2414
Query: 61 AP-AATGTAAAAS 72
TG ++A++
Sbjct: 2415 THLPVTGLSSAST 2427
Score = 28.9 bits (63), Expect = 7.8
Identities = 16/76 (21%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T LP +A+ P + + S + A P P + + GD
Sbjct: 3219 VTDTSSVSTGHATPLPVTGLSSASTGDTTRLPVTDISSASTGQATPLPVTNTSSVSTGDT 3278
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 3279 MPLPVTSPSSASTGHA 3294
Score = 28.9 bits (63), Expect = 7.8
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ A+T TT LP T +A+ P P + + S + P + G A
Sbjct: 3475 VTDTSSASTGDTTRLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLLVTDASSVSTGHA 3534
Query: 61 APAATGTAAAAS 72
P ++AS
Sbjct: 3535 TPLPVTDTSSAS 3546
Score = 28.9 bits (63), Expect = 7.8
Identities = 17/76 (22%), Positives = 30/76 (39%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 60
+++ +T T+LP +A+ P P + S + A P P + G A
Sbjct: 3827 VTDTSSVSTGHATSLPVTSRSSASTGHATPLPVTDTSSVSTGHATPLPVTSTSSVSTGHA 3886
Query: 61 APAATGTAAAASLATA 76
P + ++AS A
Sbjct: 3887 TPLPVTSPSSASTGHA 3902
Score = 28.9 bits (63), Expect = 7.8
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 1 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAP--------AAHV 52
++ +T TT LP T +A+ P P + + S + P P + H
Sbjct: 3971 LTSLSSVSTGDTTPLPVTDTSSASTGQATPLPVTSLSSVSTGDTTPLPVTIPSSASSGHT 4030
Query: 53 AGNPGGDAAPAATG 66
P DA+ +TG
Sbjct: 4031 TSLPVTDASSVSTG 4044
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 40.4 bits (93), Expect = 0.003
Identities = 49/224 (21%), Positives = 79/224 (35%), Gaps = 28/224 (12%)
Query: 160 PDGVPVEGSRYAADRRRYRRGYYGRRRGPPRNYAGEEE-------------EEGSGSSEG 206
P G P +G D+ R R G+ +GPP + + +G +G
Sbjct: 77 PQGPPPQG-----DKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQG 131
Query: 207 FDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDRRSRVLPHPNRIQAG--EI 264
PP + ++ R P+ P Q PP G ++ P P + Q +
Sbjct: 132 PPPPGKPQGPPPQGDKSRSPRSPPGKPQG--PPPQGG---NQPQGPPPPPGKPQGPPPQG 186
Query: 265 GEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPNQPS 324
G+ G P + QGP + R S+ PP P + G Q
Sbjct: 187 GKKPQGPPPPGKPQGPPPQGDKSRS---SQSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 243
Query: 325 VRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPAPPTQQ 368
+G +P +P P+Q G ++++ +P P P QQ
Sbjct: 244 PPQGGNKPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQ 287
Score = 37.0 bits (84), Expect = 0.029
Identities = 31/110 (28%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 265 GEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPP--------RPRPAPAVGEAEDKENQQA 316
G G P+G QG R+P P + +GPP P P P + +
Sbjct: 70 GPPPPGKPQGPPPQGDKSRSPR-SPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNR 128
Query: 317 TSGPNQPSVRRGYRRPYNYRRRPR-PPNAPSQDGKEAKAGEAPTENPAPP 365
GP P +G + R PR PP P G + G P P PP
Sbjct: 129 PQGPPPPGKPQGPPPQGDKSRSPRSPPGKP--QGPPPQGGNQPQGPPPPP 176
Score = 29.3 bits (64), Expect = 6.0
Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 296 PPRPRPAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAG 355
P P P P + + GP P +G + R PR P Q G + G
Sbjct: 47 PQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQ-GPPPQGG 105
Query: 356 EAPTENPAPP 365
P P PP
Sbjct: 106 NQPQGPPPPP 115
>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
sapiens]
Length = 409
Score = 40.0 bits (92), Expect = 0.003
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Query: 8 TTTTTTTLPQAPTEAAAAAPQD-PAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATG 66
T++TTTT+ QAPT A AP PA +P + A APA AA P A
Sbjct: 100 TSSTTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASAAK-QEKPAEKPAETPVA 158
Query: 67 TAAAASLATAAGSEDAEKKVLATKVLGT 94
T+ A+ +T+ S + AT L T
Sbjct: 159 TSPTATDSTSGDSSRSNLFEDATSALVT 186
Score = 30.4 bits (67), Expect = 2.7
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 6/77 (7%)
Query: 14 TLPQAPTEAAAAAPQDPAPKSPVG------SGAPQAAAPAPAAHVAGNPGGDAAPAATGT 67
T P+A + A A Q AP S + QA P PA P +AT +
Sbjct: 75 TKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPTSTPASITPASATAS 134
Query: 68 AAAASLATAAGSEDAEK 84
+ A + A + AEK
Sbjct: 135 SEPAPASAAKQEKPAEK 151
>gi|19111150 angiomotin isoform 2 [Homo sapiens]
Length = 675
Score = 40.0 bits (92), Expect = 0.003
Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 7 ATTTTTTTLPQAPTE-AAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAAT 65
A T TTT + AP AAAAAP A SP + A AAA +PAA AG PAA
Sbjct: 491 AATITTTMVAAAPVAVAAAAAPAAAAAPSPA-TAAATAAAVSPAA--AGQ-----IPAAA 542
Query: 66 GTAAAASLATAAGSEDA 82
A+AA++A +A + A
Sbjct: 543 SVASAAAVAPSAAAAAA 559
Score = 36.2 bits (82), Expect = 0.049
Identities = 37/140 (26%), Positives = 44/140 (31%), Gaps = 20/140 (14%)
Query: 4 AGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPA 63
A A AP A A P PAP + S Q AP A VA P PA
Sbjct: 554 AAAAAAVQVAPAAPAPVPAPALVPV-PAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTPA 612
Query: 64 ATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAI 123
AS AT G L N + T VF H +
Sbjct: 613 VAQAEVPASPATGPGPHRLSIPSLT------------------CNPDKTDGPVF-HSNTL 653
Query: 124 KKNNPRKYLRSVGDGETVEF 143
++ P + L D E VE+
Sbjct: 654 ERKTPIQILGQEPDAEMVEY 673
Score = 35.4 bits (80), Expect = 0.083
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 2 SEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAH-----VAGNP 56
S+ G +T T + AA AP + +PV + A AA A AA VA P
Sbjct: 446 SKTGSRDCSTQTERGTESNKTAAVAPI--SVPAPVAAAATAAAITATAATITTTMVAAAP 503
Query: 57 GGDAAPAATGTAAAASLATAAGSEDAEKKVLATKV 91
AA AA AAA S ATAA + A A ++
Sbjct: 504 VAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQI 538
Score = 33.9 bits (76), Expect = 0.24
Identities = 32/87 (36%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 2 SEAGEATTTTTTTLP---QAPTEAAAAAPQDPAPKSPVG----SGAP--QAAAPAPAAHV 52
+E G + T P AP AAA A A + + + AP AAA APAA
Sbjct: 457 TERGTESNKTAAVAPISVPAPVAAAATAAAITATAATITTTMVAAAPVAVAAAAAPAAAA 516
Query: 53 AGNPGGDAAPAATGTAAAASLATAAGS 79
A +P AA AA + AAA AA S
Sbjct: 517 APSPATAAATAAAVSPAAAGQIPAAAS 543
Score = 31.2 bits (69), Expect = 1.6
Identities = 21/67 (31%), Positives = 25/67 (37%)
Query: 7 ATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATG 66
A P T AA AA PA + + A A+A A A A APAA
Sbjct: 509 AAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAVAPSAAAAAAVQVAPAAPA 568
Query: 67 TAAAASL 73
A +L
Sbjct: 569 PVPAPAL 575
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 40.0 bits (92), Expect = 0.003
Identities = 34/77 (44%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 7 ATTTTTTTLPQAPTE-AAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAAT 65
A T TTT + AP AAAAAP A SP + A AAA +PAA AG PAA
Sbjct: 900 AATITTTMVAAAPVAVAAAAAPAAAAAPSPA-TAAATAAAVSPAA--AGQ-----IPAAA 951
Query: 66 GTAAAASLATAAGSEDA 82
A+AA++A +A + A
Sbjct: 952 SVASAAAVAPSAAAAAA 968
Score = 36.2 bits (82), Expect = 0.049
Identities = 37/140 (26%), Positives = 44/140 (31%), Gaps = 20/140 (14%)
Query: 4 AGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPA 63
A A AP A A P PAP + S Q AP A VA P PA
Sbjct: 963 AAAAAAVQVAPAAPAPVPAPALVPV-PAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTPA 1021
Query: 64 ATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAI 123
AS AT G L N + T VF H +
Sbjct: 1022 VAQAEVPASPATGPGPHRLSIPSLT------------------CNPDKTDGPVF-HSNTL 1062
Query: 124 KKNNPRKYLRSVGDGETVEF 143
++ P + L D E VE+
Sbjct: 1063 ERKTPIQILGQEPDAEMVEY 1082
Score = 35.4 bits (80), Expect = 0.083
Identities = 33/95 (34%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query: 2 SEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAH-----VAGNP 56
S+ G +T T + AA AP + +PV + A AA A AA VA P
Sbjct: 855 SKTGSRDCSTQTERGTESNKTAAVAPI--SVPAPVAAAATAAAITATAATITTTMVAAAP 912
Query: 57 GGDAAPAATGTAAAASLATAAGSEDAEKKVLATKV 91
AA AA AAA S ATAA + A A ++
Sbjct: 913 VAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQI 947
Score = 33.9 bits (76), Expect = 0.24
Identities = 32/87 (36%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 2 SEAGEATTTTTTTLP---QAPTEAAAAAPQDPAPKSPVG----SGAP--QAAAPAPAAHV 52
+E G + T P AP AAA A A + + + AP AAA APAA
Sbjct: 866 TERGTESNKTAAVAPISVPAPVAAAATAAAITATAATITTTMVAAAPVAVAAAAAPAAAA 925
Query: 53 AGNPGGDAAPAATGTAAAASLATAAGS 79
A +P AA AA + AAA AA S
Sbjct: 926 APSPATAAATAAAVSPAAAGQIPAAAS 952
Score = 31.2 bits (69), Expect = 1.6
Identities = 21/67 (31%), Positives = 25/67 (37%)
Query: 7 ATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDAAPAATG 66
A P T AA AA PA + + A A+A A A A APAA
Sbjct: 918 AAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAVAPSAAAAAAVQVAPAAPA 977
Query: 67 TAAAASL 73
A +L
Sbjct: 978 PVPAPAL 984
>gi|54860105 nadrin isoform 2 [Homo sapiens]
Length = 803
Score = 39.7 bits (91), Expect = 0.004
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 33/111 (29%)
Query: 292 RSRGPPRPR-PAPAVGEAEDKENQQATSGPNQPSVRRGYRR-------------PYNYRR 337
+ PP+P+ P A A + N Q SG NQP G + P+ RR
Sbjct: 494 KKESPPKPKDPVSAAVPAPGRNNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRR 553
Query: 338 -----RPRPPN----APSQDGKEAKAG----------EAPTENPAPPTQQS 369
P PP P G ++ +G + PT +P+PPTQ +
Sbjct: 554 AVKKPAPAPPKPGNPPPGHPGGQSSSGTSQHPPSLSPKPPTRSPSPPTQHT 604
>gi|6754638 microtubule-associated protein tau isoform 2 [Homo
sapiens]
Length = 441
Score = 39.3 bits (90), Expect = 0.006
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 262 GEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPN 321
G G+ K P GA G + R ++ PP P+ P+ GE ++ S P
Sbjct: 144 GADGKTKIATPRGAAPPG--QKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPG 201
Query: 322 QPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPA 363
P P + R P P P+++ K+ P ++P+
Sbjct: 202 SPGT------PGSRSRTPSLPTPPTREPKKVAVVRTPPKSPS 237
>gi|8400715 microtubule-associated protein tau isoform 4 [Homo
sapiens]
Length = 352
Score = 39.3 bits (90), Expect = 0.006
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 262 GEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPN 321
G G+ K P GA G + R ++ PP P+ P+ GE ++ S P
Sbjct: 86 GADGKTKIATPRGAAPPG--QKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPG 143
Query: 322 QPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPA 363
P P + R P P P+++ K+ P ++P+
Sbjct: 144 SPGT------PGSRSRTPSLPTPPTREPKKVAVVRTPPKSPS 179
>gi|8400711 microtubule-associated protein tau isoform 3 [Homo
sapiens]
Length = 383
Score = 39.3 bits (90), Expect = 0.006
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 262 GEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPN 321
G G+ K P GA G + R ++ PP P+ P+ GE ++ S P
Sbjct: 86 GADGKTKIATPRGAAPPG--QKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPG 143
Query: 322 QPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPA 363
P P + R P P P+++ K+ P ++P+
Sbjct: 144 SPGT------PGSRSRTPSLPTPPTREPKKVAVVRTPPKSPS 179
>gi|178557736 microtubule-associated protein tau isoform 5 [Homo
sapiens]
Length = 412
Score = 39.3 bits (90), Expect = 0.006
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 262 GEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPRPAPAVGEAEDKENQQATSGPN 321
G G+ K P GA G + R ++ PP P+ P+ GE ++ S P
Sbjct: 115 GADGKTKIATPRGAAPPG--QKGQANATRIPAKTPPAPKTPPSSGEPPKSGDRSGYSSPG 172
Query: 322 QPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENPA 363
P P + R P P P+++ K+ P ++P+
Sbjct: 173 SPGT------PGSRSRTPSLPTPPTREPKKVAVVRTPPKSPS 208
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.129 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,029,580
Number of Sequences: 37866
Number of extensions: 1203041
Number of successful extensions: 13719
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 634
Number of HSP's that attempted gapping in prelim test: 9378
Number of HSP's gapped (non-prelim): 4413
length of query: 372
length of database: 18,247,518
effective HSP length: 104
effective length of query: 268
effective length of database: 14,309,454
effective search space: 3834933672
effective search space used: 3834933672
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.