Guide to the Human Genome
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Name: YBX1 Sequence: fasta or formatted (324aa) NCBI GI: 34098946
Description:

nuclease sensitive element binding protein 1

Referenced in:

RNases and RNA Stability

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         29           2
 C cysteine            0.0          0           0
 D aspartate           4.0         13           1
 E glutamate           8.3         27           2
 F phenylalanine       2.2          7           1
 G glycine            12.0         39           2
 H histidine           0.6          2           1
 I isoleucine          0.9          3           1
 K lysine              4.9         16           2
 L leucine             1.2          4           1
 M methionine          1.2          4           1
 N asparagine          6.5         21           2
 P proline            10.8         35           2
 Q glutamine           7.4         24           2
 R arginine           12.0         39           4
 S serine              4.6         15           2
 T threonine           4.0         13           2
 V valine              4.9         16           2
 W tryptophan          0.3          1           1
 Y tyrosine            4.9         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nuclease sensitive element binding protein 1 
CSDA                  0.442   cold shock domain protein A isoform a 
CSDA                  0.334   cold shock domain protein A isoform b 
YBX2                  0.319   Y box binding protein 2 
LIN28B                0.067   lin-28 homolog B 
LIN28                 0.058   lin-28 homolog 
PRB3                  0.038   proline-rich protein BstNI subfamily 3 precursor [H...
PRB1                  0.035   proline-rich protein BstNI subfamily 1 isoform 1 pre...
PRH2                  0.034   proline-rich protein HaeIII subfamily 2 
PRH2                  0.034   proline-rich protein HaeIII subfamily 2 
PRB4                  0.032   proline-rich protein BstNI subfamily 4 precursor [Ho...
PRH1                  0.031   proline-rich protein HaeIII subfamily 1 
SRRM1                 0.031   serine/arginine repetitive matrix 1 
PRB2                  0.031   proline-rich protein BstNI subfamily 2 
HDGF2                 0.029   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.029   hepatoma-derived growth factor-related protein 2 iso...
LOC100133599          0.026   PREDICTED: hypothetical protein 
YLPM1                 0.026   YLP motif containing 1 
THRAP3                0.026   thyroid hormone receptor associated protein 3 [Homo...
ARID1A                0.026   AT rich interactive domain 1A isoform a 
ARID1A                0.026   AT rich interactive domain 1A isoform b 
RBMX                  0.023   RNA binding motif protein, X-linked 
CHD2                  0.023   chromodomain helicase DNA binding protein 2 isoform...
CHD2                  0.023   chromodomain helicase DNA binding protein 2 isoform...
CCDC55                0.021   coiled-coil domain containing 55 isoform 1 
PRB1                  0.021   proline-rich protein BstNI subfamily 1 isoform 2 pre...
SRRM2                 0.021   splicing coactivator subunit SRm300 
ARID1B                0.021   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.021   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.021   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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