Guide to the Human Genome
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Name: MAPT Sequence: fasta or formatted (383aa) NCBI GI: 8400711
Description:

microtubule-associated protein tau isoform 3

Referenced in:

Cytoskeleton

Other entries for this name:
alt prot [776aa] microtubule-associated protein tau isoform 6
alt prot [412aa] microtubule-associated protein tau isoform 5
alt prot [441aa] microtubule-associated protein tau isoform 2
alt prot [758aa] microtubule-associated protein tau isoform 1
alt prot [352aa] microtubule-associated protein tau isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         27           2
 C cysteine            0.5          2           1
 D aspartate           6.5         25           2
 E glutamate           4.7         18           2
 F phenylalanine       0.8          3           1
 G glycine            11.5         44           3
 H histidine           2.9         11           2
 I isoleucine          3.7         14           2
 K lysine             11.0         42           2
 L leucine             5.0         19           1
 M methionine          1.6          6           1
 N asparagine          2.9         11           1
 P proline             9.1         35           2
 Q glutamine           4.2         16           1
 R arginine            3.7         14           1
 S serine             10.4         40           2
 T threonine           6.8         26           1
 V valine              6.5         25           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.3          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   microtubule-associated protein tau isoform 3 
MAPT                  0.980   microtubule-associated protein tau isoform 5 
MAPT                  0.954   microtubule-associated protein tau isoform 2 
MAPT                  0.881   microtubule-associated protein tau isoform 4 
MAPT                  0.780   microtubule-associated protein tau isoform 1 
MAPT                  0.766   microtubule-associated protein tau isoform 6 
MAP2                  0.398   microtubule-associated protein 2 isoform 5 
MAP2                  0.398   microtubule-associated protein 2 isoform 4 
MAP2                  0.303   microtubule-associated protein 2 isoform 1 
MAP2                  0.303   microtubule-associated protein 2 isoform 2 
MAP4                  0.264   microtubule-associated protein 4 isoform 4 
MAP4                  0.213   microtubule-associated protein 4 isoform 2 
MAP4                  0.213   microtubule-associated protein 4 isoform 1 
MAP4                  0.153   microtubule-associated protein 4 isoform 5 
LMTK3                 0.033   lemur tyrosine kinase 3 
NACA                  0.033   nascent polypeptide-associated complex alpha subuni...
PCLO                  0.032   piccolo isoform 2 
PCLO                  0.032   piccolo isoform 1 
SRRM1                 0.032   serine/arginine repetitive matrix 1 
ARHGAP17              0.031   nadrin isoform 1 
SMTN                  0.029   smoothelin isoform b 
SMTN                  0.029   smoothelin isoform c 
RAPH1                 0.029   Ras association and pleckstrin homology domains 1 is...
CDGAP                 0.029   Cdc42 GTPase-activating protein 
SMTN                  0.029   smoothelin isoform a 
ARHGAP17              0.029   nadrin isoform 2 
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
KIAA0754              0.028   hypothetical protein LOC643314 
COL3A1                0.027   collagen type III alpha 1 preproprotein 
ENAH                  0.027   enabled homolog isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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