CSDA 14945

Name: CSDA	Sequence: fasta or formatted (303aa)		NCBI GI: 224586884
Description: cold shock domain protein A isoform b		Referenced in: RNases and RNA Stability
Other entries for this name: alt prot [372aa] cold shock domain protein A isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 15.8 48 5 C cysteine 0.0 0 0 D aspartate 4.0 12 1 E glutamate 7.3 22 1 F phenylalanine 1.3 4 1 G glycine 10.6 32 2 H histidine 1.0 3 1 I isoleucine 1.0 3 1 K lysine 4.6 14 2 L leucine 2.0 6 1 M methionine 0.7 2 1 N asparagine 5.0 15 2 P proline 11.9 36 2 Q glutamine 4.0 12 2 R arginine 9.6 29 3 S serine 4.3 13 2 T threonine 6.9 21 7 V valine 6.3 19 2 W tryptophan 0.3 1 1 Y tyrosine 3.6 11 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 cold shock domain protein A isoform b CSDA 0.839 cold shock domain protein A isoform a YBX1 0.420 nuclease sensitive element binding protein 1 YBX2 0.334 Y box binding protein 2 LIN28 0.069 lin-28 homolog LIN28B 0.067 lin-28 homolog B COL1A1 0.040 alpha 1 type I collagen preproprotein FOXD1 0.034 forkhead box D1 YLPM1 0.032 YLP motif containing 1 MAPT 0.030 microtubule-associated protein tau isoform 2 MAPT 0.030 microtubule-associated protein tau isoform 4 MAPT 0.030 microtubule-associated protein tau isoform 3 MAPT 0.030 microtubule-associated protein tau isoform 5 PRB1 0.030 proline-rich protein BstNI subfamily 1 isoform 1 pre... PRB1 0.030 proline-rich protein BstNI subfamily 1 isoform 3 pre... PRB2 0.029 proline-rich protein BstNI subfamily 2 ZMIZ1 0.029 retinoic acid induced 17 UBE2O 0.029 ubiquitin-conjugating enzyme E2O COL11A1 0.029 alpha 1 type XI collagen isoform B preproprotein [Ho... COL11A1 0.029 alpha 1 type XI collagen isoform C preproprotein [Ho... COL11A1 0.029 alpha 1 type XI collagen isoform A preproprotein [Ho... COL2A1 0.029 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.029 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL3A1 0.027 collagen type III alpha 1 preproprotein LOC100128074 0.027 PREDICTED: hypothetical protein LOC100130360 0.025 PREDICTED: hypothetical protein TAF4 0.025 TBP-associated factor 4 MUC4 0.025 mucin 4 isoform a LOC100293055 0.025 PREDICTED: similar to COL22A1 protein COL7A1 0.025 alpha 1 type VII collagen precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.