Guide to the Human Genome
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Name: UBE2O Sequence: fasta or formatted (1292aa) NCBI GI: 192449449
Description:

ubiquitin-conjugating enzyme E2O

Referenced in:

Protease Inhibitors
Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         92           3
 C cysteine            1.9         25           1
 D aspartate           6.8         88           2
 E glutamate           8.8        114           3
 F phenylalanine       3.1         40           2
 G glycine             7.4         95           2
 H histidine           1.9         25           2
 I isoleucine          4.0         52           2
 K lysine              6.7         87           2
 L leucine             6.7         86           2
 M methionine          1.7         22           1
 N asparagine          2.5         32           2
 P proline             7.9        102           3
 Q glutamine           3.8         49           2
 R arginine            4.6         59           2
 S serine              9.5        123           3
 T threonine           4.4         57           2
 V valine              7.8        101           3
 W tryptophan          1.2         16           1
 Y tyrosine            2.1         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-conjugating enzyme E2O 
BIRC6                 0.046   baculoviral IAP repeat-containing 6 
UBE2Z                 0.028   ubiquitin-conjugating enzyme E2Z 
UBE2T                 0.016   ubiquitin-conjugating enzyme E2T 
UBE2S                 0.015   ubiquitin-conjugating enzyme E2S 
UBE2A                 0.014   ubiquitin-conjugating enzyme E2A isoform 1 
UBE2B                 0.014   ubiquitin-conjugating enzyme E2B 
UBE2R2                0.013   ubiquitin-conjugating enzyme UBC3B 
CDKN1C                0.013   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.013   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.013   cyclin-dependent kinase inhibitor 1C isoform a 
UBE2D3                0.012   ubiquitin-conjugating enzyme E2D 3 isoform 2 
UBE2D3                0.012   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.012   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.012   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.012   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.012   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.012   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.012   ubiquitin-conjugating enzyme E2D 3 isoform 1 
CDC34                 0.012   ubiquitin-conjugating enzyme Cdc34 
UBE2D2                0.012   ubiquitin-conjugating enzyme E2D 2 isoform 1 
UBE2D3                0.012   ubiquitin-conjugating enzyme E2D 3 isoform 3 
UBE2N                 0.012   ubiquitin-conjugating enzyme E2N 
EIF3F                 0.011   eukaryotic translation initiation factor 3, subunit 5...
UBE2G2                0.011   ubiquitin-conjugating enzyme E2G 2 isoform 1 
UBE2K                 0.011   ubiquitin-conjugating enzyme E2K isoform 2 
UBE2K                 0.011   ubiquitin-conjugating enzyme E2K isoform 1 
UBE2D4                0.011   ubiquitin-conjugating enzyme E2D 4 (putative) 
C15orf39              0.011   hypothetical protein LOC56905 
KAT2A                 0.010   general control of amino acid synthesis 5-like 2 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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