Guide to the Human Genome
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Name: C2orf81 Sequence: fasta or formatted (588aa) NCBI GI: 222831614
Description:

hypothetical protein LOC388963

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         51           2
 C cysteine            1.2          7           2
 D aspartate           4.9         29           2
 E glutamate           8.0         47           2
 F phenylalanine       2.2         13           2
 G glycine             8.0         47           2
 H histidine           1.7         10           3
 I isoleucine          1.9         11           1
 K lysine              2.4         14           1
 L leucine            10.0         59           2
 M methionine          1.9         11           1
 N asparagine          0.7          4           1
 P proline            10.9         64           3
 Q glutamine           5.4         32           3
 R arginine            8.2         48           2
 S serine              9.2         54           2
 T threonine           4.6         27           2
 V valine              7.0         41           2
 W tryptophan          2.4         14           1
 Y tyrosine            0.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC388963 
EIF3B                 0.011   eukaryotic translation initiation factor 3, subunit ...
EIF3B                 0.011   eukaryotic translation initiation factor 3, subunit ...
VHL                   0.008   von Hippel-Lindau tumor suppressor isoform 2 
VHL                   0.008   von Hippel-Lindau tumor suppressor isoform 1 
CABP1                 0.008   calcium binding protein 1 isoform 3 
MUC16                 0.007   mucin 16 
RELL2                 0.007   RELT-like 2 
RELL2                 0.007   RELT-like 2 
TTN                   0.007   titin isoform N2-A 
TTN                   0.007   titin isoform novex-2 
TTN                   0.007   titin isoform novex-1 
TTN                   0.007   titin isoform N2-B 
LOC728650             0.007   PREDICTED: hypothetical protein 
PHC3                  0.007   polyhomeotic like 3 
SAPS1                 0.007   SAPS domain family, member 1 
SBF1                  0.007   SET binding factor 1 
AFF1                  0.007   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
ZMYND8                0.007   zinc finger, MYND-type containing 8 isoform c 
ZMYND8                0.007   zinc finger, MYND-type containing 8 isoform a 
ZMYND8                0.007   zinc finger, MYND-type containing 8 isoform b 
KIAA1967              0.006   p30 DBC protein 
KIAA1967              0.006   p30 DBC protein 
GPRIN1                0.006   G protein-regulated inducer of neurite outgrowth 1 ...
LOC100292655          0.006   PREDICTED: similar to armadillo repeat containing, ...
LOC100292217          0.006   PREDICTED: hypothetical protein 
LOC100288033          0.006   PREDICTED: hypothetical protein 
LOC100288033          0.006   PREDICTED: hypothetical protein XP_002343859 
LOC100287105          0.006   PREDICTED: hypothetical protein XP_002342369 
CEP164                0.006   centrosomal protein 164kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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