Guide to the Human Genome
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Name: SBF1 Sequence: fasta or formatted (1893aa) NCBI GI: 239735519
Description:

SET binding factor 1

Referenced in:

Inositol Pathways
Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8        147           3
 C cysteine            2.0         37           2
 D aspartate           4.7         89           2
 E glutamate           7.0        133           3
 F phenylalanine       4.0         76           2
 G glycine             6.3        120           2
 H histidine           2.5         47           2
 I isoleucine          2.3         44           2
 K lysine              3.5         66           2
 L leucine            11.3        214           3
 M methionine          1.5         29           2
 N asparagine          1.8         35           1
 P proline             7.1        135           3
 Q glutamine           5.4        102           2
 R arginine            7.8        148           3
 S serine              8.1        154           3
 T threonine           5.1         96           2
 V valine              7.9        150           3
 W tryptophan          1.3         24           1
 Y tyrosine            2.5         47           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SET binding factor 1 
SBF2                  0.561   SET binding factor 2 
MTMR3                 0.040   myotubularin-related protein 3 isoform b 
MTMR3                 0.040   myotubularin-related protein 3 isoform a 
MTMR3                 0.040   myotubularin-related protein 3 isoform c 
MTMR4                 0.033   myotubularin related protein 4 
MTMR2                 0.032   myotubularin-related protein 2 isoform 1 
MTMR2                 0.032   myotubularin-related protein 2 isoform 2 
MTMR2                 0.032   myotubularin-related protein 2 isoform 2 
MTM1                  0.031   myotubularin 
MTMR8                 0.030   myotubularin related protein 8 
MTMR1                 0.030   myotubularin-related protein 1 
MTMR7                 0.030   myotubularin related protein 7 
DENND4B               0.027   DENN/MADD domain containing 4B 
MTMR6                 0.027   myotubularin related protein 6 
DENND4A               0.026   DENN/MADD domain containing 4A isoform 1 
DENND4A               0.026   DENN/MADD domain containing 4A isoform 2 
MTMR9                 0.025   myotubularin related protein 9 
MTMR10                0.024   myotubularin related protein 10 
DENND5A               0.021   RAB6 interacting protein 1 
MADD                  0.021   MAP-kinase activating death domain-containing prote...
MADD                  0.021   MAP-kinase activating death domain-containing prote...
MADD                  0.021   MAP-kinase activating death domain-containing prote...
MADD                  0.021   MAP-kinase activating death domain-containing protei...
MADD                  0.021   MAP-kinase activating death domain-containing prote...
MADD                  0.021   MAP-kinase activating death domain-containing prote...
MADD                  0.021   MAP-kinase activating death domain-containing prote...
MADD                  0.021   MAP-kinase activating death domain-containing prote...
MADD                  0.021   MAP-kinase activating death domain-containing prote...
MADD                  0.021   MAP-kinase activating death domain-containing prote...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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