VHL 26742

Name: VHL	Sequence: fasta or formatted (172aa)		NCBI GI: 38045906
Description: von Hippel-Lindau tumor suppressor isoform 2		Referenced in: Adrenals Cullins and SCF Complexes Oxygen Sensing and Hemoglobin PHD Finger Proteins RNA Polymerase and General Transcription Factors
Other entries for this name: alt prot [213aa] von Hippel-Lindau tumor suppressor isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.7 8 1 C cysteine 1.2 2 1 D aspartate 4.7 8 1 E glutamate 16.9 29 3 F phenylalanine 1.2 2 1 G glycine 8.1 14 2 H histidine 1.7 3 1 I isoleucine 2.3 4 1 K lysine 1.7 3 1 L leucine 7.6 13 1 M methionine 1.7 3 1 N asparagine 3.5 6 1 P proline 9.3 16 2 Q glutamine 3.5 6 1 R arginine 11.0 19 2 S serine 5.8 10 1 T threonine 2.3 4 1 V valine 8.1 14 2 W tryptophan 1.2 2 1 Y tyrosine 3.5 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 von Hippel-Lindau tumor suppressor isoform 2 VHL 0.940 von Hippel-Lindau tumor suppressor isoform 1 VHLL 0.236 von Hippel-Lindau tumor suppressor-like SLC24A1 0.048 solute carrier family 24 (sodium/potassium/calcium ex... TGOLN2 0.048 trans-golgi network protein 2 PTMS 0.045 parathymosin LOC100132713 0.042 PREDICTED: similar to hCG1654128 LOC100132713 0.042 PREDICTED: similar to hCG1654128 ZFHX2 0.042 PREDICTED: zinc finger homeobox 2 ZFHX2 0.042 PREDICTED: zinc finger homeobox 2 ZFHX2 0.042 PREDICTED: zinc finger homeobox 2 LOC100132713 0.039 PREDICTED: similar to hCG1654128 RANGAP1 0.030 Ran GTPase activating protein 1 YTHDC1 0.030 splicing factor YT521-B isoform 2 YTHDC1 0.030 splicing factor YT521-B isoform 1 PALM3 0.030 hypothetical protein LOC342979 NEFH 0.030 neurofilament, heavy polypeptide 200kDa NEFM 0.030 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFM 0.030 neurofilament, medium polypeptide 150kDa isoform 2 ... NEFL 0.030 neurofilament, light polypeptide 68kDa AATF 0.030 apoptosis antagonizing transcription factor BDP1 0.030 transcription factor-like nuclear regulator ZNF592 0.030 zinc finger protein 592 TNNT2 0.027 troponin T type 2, cardiac isoform 3 TNNT2 0.027 troponin T type 2, cardiac isoform 2 LOC100287390 0.027 PREDICTED: hypothetical protein XP_002342820 LOC100287390 0.027 PREDICTED: hypothetical protein MYT1 0.027 myelin transcription factor 1 RPGR 0.027 retinitis pigmentosa GTPase regulator isoform C [Hom... KIF21B 0.027 kinesin family member 21B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.