VHL 29667

Name: VHL	Sequence: fasta or formatted (213aa)		NCBI GI: 4507891
Description: von Hippel-Lindau tumor suppressor isoform 1		Referenced in: Adrenals Cullins and SCF Complexes Oxygen Sensing and Hemoglobin PHD Finger Proteins RNA Polymerase and General Transcription Factors
Other entries for this name: alt prot [172aa] von Hippel-Lindau tumor suppressor isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.7 10 1 C cysteine 0.9 2 1 D aspartate 5.2 11 1 E glutamate 14.1 30 3 F phenylalanine 2.3 5 1 G glycine 8.5 18 2 H histidine 2.3 5 1 I isoleucine 2.8 6 1 K lysine 1.4 3 1 L leucine 9.4 20 2 M methionine 1.4 3 1 N asparagine 4.2 9 1 P proline 8.9 19 2 Q glutamine 3.8 8 1 R arginine 9.4 20 2 S serine 5.2 11 1 T threonine 3.3 7 1 V valine 8.0 17 2 W tryptophan 1.4 3 1 Y tyrosine 2.8 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 von Hippel-Lindau tumor suppressor isoform 1 VHL 0.748 von Hippel-Lindau tumor suppressor isoform 2 VHLL 0.349 von Hippel-Lindau tumor suppressor-like SLC24A1 0.038 solute carrier family 24 (sodium/potassium/calcium ex... TGOLN2 0.038 trans-golgi network protein 2 PTMS 0.036 parathymosin LOC100132713 0.034 PREDICTED: similar to hCG1654128 LOC100132713 0.034 PREDICTED: similar to hCG1654128 ZFHX2 0.034 PREDICTED: zinc finger homeobox 2 ZFHX2 0.034 PREDICTED: zinc finger homeobox 2 ZFHX2 0.034 PREDICTED: zinc finger homeobox 2 LOC100132713 0.031 PREDICTED: similar to hCG1654128 RANGAP1 0.024 Ran GTPase activating protein 1 YTHDC1 0.024 splicing factor YT521-B isoform 2 YTHDC1 0.024 splicing factor YT521-B isoform 1 PALM3 0.024 hypothetical protein LOC342979 NEFH 0.024 neurofilament, heavy polypeptide 200kDa NEFM 0.024 neurofilament, medium polypeptide 150kDa isoform 1 ... NEFM 0.024 neurofilament, medium polypeptide 150kDa isoform 2 ... NEFL 0.024 neurofilament, light polypeptide 68kDa AATF 0.024 apoptosis antagonizing transcription factor BDP1 0.024 transcription factor-like nuclear regulator ZNF592 0.024 zinc finger protein 592 TNNT2 0.022 troponin T type 2, cardiac isoform 3 TNNT2 0.022 troponin T type 2, cardiac isoform 2 LOC100287390 0.022 PREDICTED: hypothetical protein XP_002342820 LOC100287390 0.022 PREDICTED: hypothetical protein MYT1 0.022 myelin transcription factor 1 RPGR 0.022 retinitis pigmentosa GTPase regulator isoform C [Hom... KIF21B 0.022 kinesin family member 21B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.