Guide to the Human Genome
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Name: LOC100288033 Sequence: fasta or formatted (518aa) NCBI GI: 239752343
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {518aa} PREDICTED: hypothetical protein XP_002343859
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         40           3
 C cysteine            1.2          6           1
 D aspartate           5.4         28           2
 E glutamate           6.6         34           1
 F phenylalanine       2.3         12           1
 G glycine            11.8         61           3
 H histidine           1.5          8           1
 I isoleucine          2.1         11           2
 K lysine              4.4         23           2
 L leucine             7.3         38           2
 M methionine          1.0          5           1
 N asparagine          1.2          6           1
 P proline            12.0         62           2
 Q glutamine           6.0         31           3
 R arginine            7.9         41           2
 S serine             10.4         54           2
 T threonine           3.3         17           1
 V valine              5.6         29           2
 W tryptophan          1.5          8           1
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288033          1.000   PREDICTED: hypothetical protein XP_002343859 
LOC100292217          0.949   PREDICTED: hypothetical protein 
CXorf49               0.676   hypothetical protein LOC100130361 
CXorf49B              0.676   hypothetical protein LOC100132994 
COL2A1                0.031   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.031   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL11A1               0.029   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.029   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.029   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL5A1                0.029   alpha 1 type V collagen preproprotein 
COL11A2               0.028   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.028   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.028   collagen, type XI, alpha 2 isoform 1 preproprotein ...
TCOF1                 0.023   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.023   Treacher Collins-Franceschetti syndrome 1 isoform b ...
COL1A1                0.022   alpha 1 type I collagen preproprotein 
IRS4                  0.021   insulin receptor substrate 4 
COL27A1               0.020   collagen, type XXVII, alpha 1 
CSF1                  0.019   colony stimulating factor 1 isoform a precursor [Hom...
CSF1                  0.019   colony stimulating factor 1 isoform a precursor [Hom...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.019   Treacher Collins-Franceschetti syndrome 1 isoform c ...
NACA                  0.019   nascent polypeptide-associated complex alpha subuni...
COL7A1                0.017   alpha 1 type VII collagen precursor 
COL3A1                0.016   collagen type III alpha 1 preproprotein 
FLJ22184              0.016   PREDICTED: hypothetical protein FLJ22184 
AFF1                  0.016   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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