Guide to the Human Genome
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Name: EIF3B Sequence: fasta or formatted (814aa) NCBI GI: 83367072
Description:

eukaryotic translation initiation factor 3, subunit 9 eta, 116kDa

Referenced in:

Translation Factors

Other entries for this name:
alt mRNA [814aa] eukaryotic translation initiation factor 3, subunit 9 eta, 116kDa
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         62           2
 C cysteine            0.9          7           1
 D aspartate           7.4         60           2
 E glutamate           9.8         80           3
 F phenylalanine       4.8         39           2
 G glycine             6.1         50           2
 H histidine           1.8         15           1
 I isoleucine          5.0         41           3
 K lysine              6.5         53           2
 L leucine             6.3         51           2
 M methionine          2.0         16           2
 N asparagine          3.3         27           2
 P proline             6.3         51           3
 Q glutamine           4.8         39           3
 R arginine            5.4         44           3
 S serine              6.3         51           2
 T threonine           4.3         35           1
 V valine              6.5         53           2
 W tryptophan          2.6         21           2
 Y tyrosine            2.3         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eukaryotic translation initiation factor 3, subunit ... 
EIF3B                 1.000   eukaryotic translation initiation factor 3, subunit ...
EIF2A                 0.039   eukaryotic translation initiation factor 2A 
CLIC6                 0.021   chloride intracellular channel 6 
BASP1                 0.019   brain abundant, membrane attached signal protein 1 [...
OGFR                  0.017   opioid growth factor receptor 
RP1L1                 0.017   retinitis pigmentosa 1-like 1 
TAF4                  0.016   TBP-associated factor 4 
CCDC96                0.015   coiled-coil domain containing 96 
NAF1                  0.015   nuclear assembly factor 1 homolog isoform b 
NAF1                  0.015   nuclear assembly factor 1 homolog isoform a 
COL7A1                0.015   alpha 1 type VII collagen precursor 
COL5A2                0.014   alpha 2 type V collagen preproprotein 
FSCB                  0.014   fibrous sheath CABYR binding protein 
GNAS                  0.014   GNAS complex locus XLas 
WNK2                  0.014   WNK lysine deficient protein kinase 2 
MARCKS                0.013   myristoylated alanine-rich protein kinase C substra...
CDKN1C                0.013   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.013   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.013   cyclin-dependent kinase inhibitor 1C isoform a 
NEFM                  0.013   neurofilament, medium polypeptide 150kDa isoform 1 ...
NEFM                  0.013   neurofilament, medium polypeptide 150kDa isoform 2 ...
SOBP                  0.013   sine oculis binding protein homolog 
PPP1R9B               0.013   protein phosphatase 1, regulatory subunit 9B 
NACA                  0.013   nascent polypeptide-associated complex alpha subuni...
COL2A1                0.013   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.013   collagen, type II, alpha 1 isoform 2 precursor [Hom...
NEFH                  0.013   neurofilament, heavy polypeptide 200kDa 
HNRNPUL2              0.013   heterogeneous nuclear ribonucleoprotein U-like 2 [H...
PEG3                  0.012   paternally expressed 3 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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