Guide to the Human Genome
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Name: LOC100292217 Sequence: fasta or formatted (503aa) NCBI GI: 239757832
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         39           3
 C cysteine            1.2          6           1
 D aspartate           4.8         24           2
 E glutamate           6.4         32           1
 F phenylalanine       2.0         10           1
 G glycine            12.3         62           3
 H histidine           1.8          9           1
 I isoleucine          1.8          9           2
 K lysine              4.4         22           2
 L leucine             6.6         33           2
 M methionine          1.0          5           1
 N asparagine          1.4          7           1
 P proline            12.7         64           2
 Q glutamine           5.4         27           3
 R arginine            8.2         41           2
 S serine             10.7         54           2
 T threonine           3.2         16           1
 V valine              6.2         31           2
 W tryptophan          1.6          8           1
 Y tyrosine            0.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288033          0.973   PREDICTED: hypothetical protein 
LOC100288033          0.973   PREDICTED: hypothetical protein XP_002343859 
CXorf49               0.647   hypothetical protein LOC100130361 
CXorf49B              0.647   hypothetical protein LOC100132994 
COL2A1                0.032   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.032   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL11A1               0.030   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.030   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.030   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL5A1                0.030   alpha 1 type V collagen preproprotein 
COL11A2               0.029   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.029   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.029   collagen, type XI, alpha 2 isoform 1 preproprotein ...
TCOF1                 0.024   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.024   Treacher Collins-Franceschetti syndrome 1 isoform b ...
COL1A1                0.023   alpha 1 type I collagen preproprotein 
IRS4                  0.022   insulin receptor substrate 4 
COL27A1               0.021   collagen, type XXVII, alpha 1 
CSF1                  0.020   colony stimulating factor 1 isoform a precursor [Hom...
CSF1                  0.020   colony stimulating factor 1 isoform a precursor [Hom...
TCOF1                 0.020   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.020   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.020   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.020   Treacher Collins-Franceschetti syndrome 1 isoform c ...
NACA                  0.020   nascent polypeptide-associated complex alpha subuni...
COL7A1                0.018   alpha 1 type VII collagen precursor 
COL3A1                0.017   collagen type III alpha 1 preproprotein 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
AFF1                  0.017   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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