Guide to the Human Genome
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Name: LOC100287105 Sequence: fasta or formatted (268aa) NCBI GI: 239741997
Description:

PREDICTED: hypothetical protein XP_002342369

Not currently referenced in the text

Other entries for this name:
alt prot {267aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         26           2
 C cysteine            2.2          6           1
 D aspartate           2.2          6           1
 E glutamate           4.5         12           1
 F phenylalanine       3.4          9           1
 G glycine             9.3         25           2
 H histidine           2.2          6           1
 I isoleucine          2.2          6           1
 K lysine              3.7         10           1
 L leucine             9.3         25           2
 M methionine          0.4          1           1
 N asparagine          3.0          8           1
 P proline            11.9         32           1
 Q glutamine           3.7         10           1
 R arginine            9.3         25           1
 S serine             10.8         29           2
 T threonine           5.6         15           2
 V valine              3.0          8           2
 W tryptophan          2.2          6           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342369 
LOC100291891          0.936   PREDICTED: hypothetical protein XP_002345697 
LOC100287105          0.936   PREDICTED: hypothetical protein 
LOC100288836          0.022   PREDICTED: hypothetical protein XP_002343912 
ZNF469                0.021   zinc finger protein 469 
SNAPC4                0.021   small nuclear RNA activating complex, polypeptide 4,...
KIF26A                0.017   kinesin family member 26A 
TNS1                  0.015   tensin 
MAML2                 0.015   mastermind-like 2 
LOC100292688          0.015   PREDICTED: hypothetical protein 
LOC100128703          0.015   PREDICTED: hypothetical protein 
SAMD11                0.015   sterile alpha motif domain containing 11 
LOC100290372          0.015   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.015   PREDICTED: hypothetical protein XP_002342652 
LOC100128703          0.013   PREDICTED: hypothetical protein LOC100128703 
C2orf81               0.013   hypothetical protein LOC388963 
LOC100293121          0.013   PREDICTED: hypothetical protein 
LOC100292793          0.013   PREDICTED: hypothetical protein 
LOC100129697          0.013   PREDICTED: hypothetical protein 
LOC100292568          0.013   PREDICTED: hypothetical protein 
LOC100290071          0.013   PREDICTED: hypothetical protein XP_002347957 
LOC100291146          0.013   PREDICTED: hypothetical protein XP_002346600 
LOC100287600          0.013   PREDICTED: hypothetical protein XP_002343679 
LOC100289534          0.013   PREDICTED: hypothetical protein XP_002342442 
TAF4                  0.013   TBP-associated factor 4 
TTBK1                 0.013   tau tubulin kinase 1 
LOC100293375          0.011   PREDICTED: hypothetical protein 
LOC100293980          0.011   PREDICTED: hypothetical protein 
LOC100290783          0.011   PREDICTED: hypothetical protein XP_002347614 
LOC731282             0.011   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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