Guide to the Human Genome
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Name: KRTAP7-1 Sequence: fasta or formatted (87aa) NCBI GI: 222418619
Description:

keratin associated protein 7-1

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.1          1           1
 C cysteine            6.9          6           2
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       8.0          7           1
 G glycine            21.8         19           2
 H histidine           1.1          1           1
 I isoleucine          2.3          2           1
 K lysine              0.0          0           0
 L leucine             5.7          5           1
 M methionine          1.1          1           1
 N asparagine          8.0          7           2
 P proline             6.9          6           1
 Q glutamine           0.0          0           0
 R arginine            3.4          3           1
 S serine             11.5         10           2
 T threonine           5.7          5           1
 V valine              2.3          2           2
 W tryptophan          1.1          1           1
 Y tyrosine           12.6         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   keratin associated protein 7-1 
HNRNPA2B1             0.085   heterogeneous nuclear ribonucleoprotein A2/B1 isofor...
HNRNPA2B1             0.085   heterogeneous nuclear ribonucleoprotein A2/B1 isoform...
KRTAP6-3              0.079   keratin associated protein 6-3 
KRT9                  0.073   keratin 9 
LOC647262             0.073   PREDICTED: hypothetical protein 
KRTAP6-2              0.068   keratin associated protein 6-2 
HNRNPA1               0.062   heterogeneous nuclear ribonucleoprotein A1 isoform b...
KRTAP19-1             0.062   keratin associated protein 19-1 
LOC731932             0.056   PREDICTED: hypothetical protein 
LOC731932             0.056   PREDICTED: hypothetical protein 
KRTAP19-5             0.056   keratin associated protein 19-5 
KRTAP19-3             0.056   keratin associated protein 19-3 
LOC731932             0.056   PREDICTED: hypothetical protein 
HNRNPA3               0.056   heterogeneous nuclear ribonucleoprotein A3 
LOC100294395          0.045   PREDICTED: similar to serum response factor-related...
KRT78                 0.045   keratin 5b 
KRTAP6-1              0.045   keratin associated protein 6-1 
OCLN                  0.045   occludin 
KRT10                 0.045   keratin 10 
KRTAP19-4             0.040   keratin associated protein 19-4 
KRT16                 0.040   keratin 16 
KRT24                 0.040   keratin 24 
KRT76                 0.040   keratin 76 
NUP214                0.040   nucleoporin 214kDa 
KRTAP13-1             0.040   keratin associated protein 13-1 
KRTAP21-1             0.040   keratin associated protein 21-1 
KRT5                  0.034   keratin 5 
KRT13                 0.034   keratin 13 isoform b 
KRT13                 0.034   keratin 13 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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