Guide to the Human Genome
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Name: NFAM1 Sequence: fasta or formatted (270aa) NCBI GI: 22095335
Description:

NFAT activation molecule 1 precursor

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         15           2
 C cysteine            2.2          6           1
 D aspartate           3.0          8           2
 E glutamate           4.8         13           1
 F phenylalanine       3.0          8           1
 G glycine             8.1         22           2
 H histidine           3.0          8           1
 I isoleucine          1.9          5           1
 K lysine              3.7         10           2
 L leucine            12.2         33           3
 M methionine          1.1          3           1
 N asparagine          3.0          8           1
 P proline            10.4         28           2
 Q glutamine           4.8         13           1
 R arginine            6.3         17           2
 S serine              8.5         23           2
 T threonine           7.8         21           1
 V valine              5.9         16           2
 W tryptophan          1.5          4           1
 Y tyrosine            3.3          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   NFAT activation molecule 1 precursor 
F2RL3                 0.019   coagulation factor II (thrombin) receptor-like 3 pre...
TRIOBP                0.013   TRIO and F-actin binding protein isoform 6 
TFG                   0.011   TRK-fused 
TFG                   0.011   TRK-fused 
DIP2A                 0.011   disco-interacting protein 2A isoform f 
SPEG                  0.011   SPEG complex locus 
FILIP1                0.011   filamin A interacting protein 1 
CCDC64B               0.009   coiled-coil domain containing 64B 
FIGNL2                0.009   fidgetin-like 2 
THRAP3                0.009   thyroid hormone receptor associated protein 3 [Homo...
LOC100291952          0.007   PREDICTED: hypothetical protein XP_002344992 
SEMA4F                0.007   semaphorin W 
KIAA1632              0.007   hypothetical protein LOC57724 
HSD17B14              0.007   dehydrogenase/reductase (SDR family) member 10 [Homo...
COL4A3                0.007   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.007   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.007   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.007   alpha 3 type IV collagen isoform 1 precursor 
GPR114                0.007   G protein-coupled receptor 114 
MUC16                 0.006   mucin 16 
ZNF185                0.006   zinc finger protein 185 
CADM4                 0.006   cell adhesion molecule 4 
COL15A1               0.006   alpha 1 type XV collagen precursor 
CSF3R                 0.006   colony stimulating factor 3 receptor isoform d precu...
DLL3                  0.006   delta-like 3 protein isoform 1 precursor 
DLL3                  0.006   delta-like 3 protein isoform 2 precursor 
CSF3R                 0.006   colony stimulating factor 3 receptor isoform c precu...
CSF3R                 0.006   colony stimulating factor 3 receptor isoform b precu...
CSF3R                 0.006   colony stimulating factor 3 receptor isoform a precur...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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