Guide to the Human Genome
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Name: LOC100291952 Sequence: fasta or formatted (474aa) NCBI GI: 239756453
Description:

PREDICTED: hypothetical protein XP_002344992

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         43           2
 C cysteine            1.5          7           1
 D aspartate           2.3         11           2
 E glutamate           2.7         13           2
 F phenylalanine       2.1         10           1
 G glycine            13.1         62           3
 H histidine           5.5         26           3
 I isoleucine          1.3          6           1
 K lysine              1.1          5           1
 L leucine            15.4         73           4
 M methionine          0.8          4           1
 N asparagine          0.6          3           1
 P proline            10.5         50           2
 Q glutamine           6.5         31           1
 R arginine            8.6         41           3
 S serine              7.2         34           2
 T threonine           2.7         13           1
 V valine              6.3         30           2
 W tryptophan          2.1         10           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344992 
C2orf16               0.015   hypothetical protein LOC84226 
PATL1                 0.013   protein associated with topoisomerase II homolog 1 ...
LOC100292947          0.013   PREDICTED: hypothetical protein 
LOC100290242          0.013   PREDICTED: hypothetical protein XP_002347786 
LOC100287808          0.013   PREDICTED: hypothetical protein XP_002343553 
LOC643355             0.011   PREDICTED: hypothetical protein 
LOC100289745          0.011   PREDICTED: hypothetical protein XP_002347086 
LOC100288749          0.011   PREDICTED: hypothetical protein XP_002342931 
LOC389333             0.010   hypothetical protein LOC389333 
KCNH2                 0.009   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.009   voltage-gated potassium channel, subfamily H, member ...
BBC3                  0.009   BCL2 binding component 3 isoform 1 
LOC100287499          0.008   PREDICTED: hypothetical protein 
LOC100287499          0.008   PREDICTED: hypothetical protein XP_002343643 
KCNH3                 0.008   potassium voltage-gated channel, subfamily H (eag-re...
LOC729590             0.008   PREDICTED: hypothetical protein 
LOC729590             0.008   PREDICTED: hypothetical protein 
LOC729590             0.008   PREDICTED: hypothetical protein 
GLI1                  0.007   GLI family zinc finger 1 isoform 2 
GLI1                  0.007   GLI family zinc finger 1 isoform 1 
LRRC56                0.007   leucine rich repeat containing 56 
LOC100292482          0.007   PREDICTED: hypothetical protein 
LOC100293776          0.007   PREDICTED: hypothetical protein 
LOC100288658          0.007   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.007   PREDICTED: hypothetical protein 
MAP3K11               0.007   mitogen-activated protein kinase kinase kinase 11 [Ho...
LOC100293662          0.007   PREDICTED: hypothetical protein 
LOC100289444          0.007   PREDICTED: hypothetical protein 
LOC100289444          0.007   PREDICTED: hypothetical protein XP_002342754 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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