Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: THRAP3 Sequence: fasta or formatted (955aa) NCBI GI: 167234419
Description:

thyroid hormone receptor associated protein 3

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
Nuclear Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4         42           2
 C cysteine            0.1          1           1
 D aspartate           5.4         52           2
 E glutamate           8.7         83           3
 F phenylalanine       3.6         34           1
 G glycine             8.1         77           3
 H histidine           2.8         27           2
 I isoleucine          1.4         13           1
 K lysine             10.5        100           2
 L leucine             2.9         28           2
 M methionine          1.0         10           1
 N asparagine          3.4         32           5
 P proline             5.3         51           3
 Q glutamine           3.8         36           1
 R arginine           11.9        114           3
 S serine             16.3        156           6
 T threonine           4.2         40           2
 V valine              2.4         23           3
 W tryptophan          0.8          8           1
 Y tyrosine            2.9         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thyroid hormone receptor associated protein 3 [Homo... 
BCLAF1                0.267   BCL2-associated transcription factor 1 isoform 1 [Hom...
BCLAF1                0.203   BCL2-associated transcription factor 1 isoform 2 [H...
LOC731605             0.198   PREDICTED: similar to BCL2-associated transcription...
LOC731605             0.196   PREDICTED: similar to BCL2-associated transcription...
BCLAF1                0.180   BCL2-associated transcription factor 1 isoform 3 [H...
CXorf23               0.042   hypothetical protein LOC256643 
SRRM2                 0.041   splicing coactivator subunit SRm300 
SFRS4                 0.039   splicing factor, arginine/serine-rich 4 
RBBP6                 0.038   retinoblastoma-binding protein 6 isoform 2 
RBBP6                 0.038   retinoblastoma-binding protein 6 isoform 1 
LOC100170229          0.033   hypothetical protein LOC100170229 
ZC3H18                0.033   zinc finger CCCH-type containing 18 
NKTR                  0.031   natural killer-tumor recognition sequence 
SFRS11                0.030   splicing factor, arginine/serine-rich 11 
SON                   0.030   SON DNA-binding protein isoform F 
ZC3H13                0.030   zinc finger CCCH-type containing 13 
SON                   0.029   SON DNA-binding protein isoform B 
SFRS6                 0.029   arginine/serine-rich splicing factor 6 
SRRM1                 0.029   serine/arginine repetitive matrix 1 
NOLC1                 0.028   nucleolar and coiled-body phosphoprotein 1 
FLG                   0.028   filaggrin 
DSPP                  0.028   dentin sialophosphoprotein preproprotein 
ATRX                  0.028   transcriptional regulator ATRX isoform 2 
ATRX                  0.028   transcriptional regulator ATRX isoform 1 
SFRS16                0.027   splicing factor, arginine/serine-rich 16 
KIAA1853              0.025   KIAA1853 protein 
SFRS12                0.025   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.025   splicing factor, arginine/serine-rich 12 isoform b [...
ZRANB2                0.024   zinc finger protein 265 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press