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Search of human proteins with 219802098
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|219802098 leucine twenty homeobox [Homo sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|219802098 leucine twenty homeobox [Homo sapiens] 342 1e-94
gi|61969666 arginine-fifty homeobox [Homo sapiens] 71 4e-13
gi|4557489 cone-rod homeobox protein [Homo sapiens] 59 2e-09
gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens] 51 4e-07
gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens] 51 4e-07
gi|27777663 goosecoid [Homo sapiens] 49 2e-06
gi|170784824 paired box 4 [Homo sapiens] 46 1e-05
gi|24497589 aristaless related homeobox [Homo sapiens] 44 7e-05
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 44 7e-05
gi|4885363 goosecoid homeobox 2 [Homo sapiens] 44 7e-05
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 43 1e-04
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 42 2e-04
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 42 2e-04
gi|4505615 paired box gene 6 isoform a [Homo sapiens] 42 2e-04
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 42 2e-04
gi|24497526 homeobox B1 [Homo sapiens] 42 3e-04
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 42 3e-04
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 41 6e-04
gi|57232759 intestine-specific homeobox [Homo sapiens] 41 6e-04
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 40 7e-04
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 40 7e-04
gi|24234711 paired-like homeodomain transcription factor 2 isofo... 40 7e-04
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 40 7e-04
gi|153945816 Nanog homeobox [Homo sapiens] 40 0.001
gi|239755732 PREDICTED: similar to Nanog homeobox isoform 1 [Hom... 40 0.001
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 40 0.001
gi|70608170 H6 family homeobox 2 [Homo sapiens] 39 0.002
gi|118582284 msh homeobox 1 [Homo sapiens] 39 0.002
gi|4506049 hematopoietically expressed homeobox [Homo sapiens] 39 0.002
gi|5031761 homeobox A1 isoform a [Homo sapiens] 39 0.002
>gi|219802098 leucine twenty homeobox [Homo sapiens]
Length = 168
Score = 342 bits (876), Expect = 1e-94
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MHPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVKKEE 60
MHPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVKKEE
Sbjct: 1 MHPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVKKEE 60
Query: 61 TPSAITTANIRPVSPGISDANDHDLREPSGIKNPGGASASARVSSWDSQSYDIEQICLGA 120
TPSAITTANIRPVSPGISDANDHDLREPSGIKNPGGASASARVSSWDSQSYDIEQICLGA
Sbjct: 61 TPSAITTANIRPVSPGISDANDHDLREPSGIKNPGGASASARVSSWDSQSYDIEQICLGA 120
Query: 121 SNPPWASTLFEIDEFVKIYDLPGEDDTSSLNQYLFPVCLEYDQLQSSV 168
SNPPWASTLFEIDEFVKIYDLPGEDDTSSLNQYLFPVCLEYDQLQSSV
Sbjct: 121 SNPPWASTLFEIDEFVKIYDLPGEDDTSSLNQYLFPVCLEYDQLQSSV 168
>gi|61969666 arginine-fifty homeobox [Homo sapiens]
Length = 315
Score = 71.2 bits (173), Expect = 4e-13
Identities = 56/161 (34%), Positives = 76/161 (47%), Gaps = 10/161 (6%)
Query: 1 MHPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVKKEE 60
M P KLA +L L S VK+WF+N+R K K+QQ+QQ S NQ KK
Sbjct: 101 MFPDRNLQEKLALRLDLPESTVKVWFRNRRFKLKKQQQQQ-----SAKQRNQILPSKKNV 155
Query: 61 TPSAITTANIRPVSPGISDANDHDLREPSGIKNPGGASASARVSSWDSQSYDIEQICLGA 120
S T+ + SP ISD +P N S S+ D Q D + L A
Sbjct: 156 PTSPRTSPSPYAFSPVISDFYSSLPSQPLDPSNWAWNSTFTESSTSDFQMQDTQWERLVA 215
Query: 121 SNPPWASTLFEIDEFVKIYDLPGEDDTSS-----LNQYLFP 156
S P S ++I + +++Y+LP E++ SS L QYL P
Sbjct: 216 SVPALYSDAYDIFQIIELYNLPDENEISSSSFHCLYQYLSP 256
>gi|4557489 cone-rod homeobox protein [Homo sapiens]
Length = 299
Score = 58.9 bits (141), Expect = 2e-09
Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 7/163 (4%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVKKEET 61
+P + ++A K+ L S V++WFKN+RAK ++Q++QQ Q + G + K++
Sbjct: 63 YPDVYAREEVALKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPPGGQAKARPAKRKAG 122
Query: 62 PSAITTANIRPVSPGISDANDHDLREPSGIKNPGGASASARVSSWDSQSYDIEQICLGAS 121
S + ++ P GISD+ L PSG A+ S + +S + ++ L AS
Sbjct: 123 TSPRPSTDVCPDPLGISDSYSPPLPGPSGSPTTAVATVSIWSPASESPLPEAQRAGLVAS 182
Query: 122 NP-----PWASTLFEIDEFVKIYDLPGEDDT--SSLNQYLFPV 157
P P+A T F G + S L+ YL P+
Sbjct: 183 GPSLTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPM 225
>gi|27436933 orthodenticle homeobox 2 isoform b [Homo sapiens]
Length = 289
Score = 51.2 bits (121), Expect = 4e-07
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 16/110 (14%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQ-TRPSLGPANQTTSVKKEE 60
+P + ++A K+ L S V++WFKN+RAK ++QQ+QQ + + PA + TS +E
Sbjct: 62 YPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPAREV 121
Query: 61 TPSAITTANIRPVSPGISDANDHDLREPSGIKNPGGASASARVSSWDSQS 110
+ + T+ P PS P AS+SA VS W S
Sbjct: 122 SSESGTSGQFTP---------------PSSTSVPTIASSSAPVSIWSPAS 156
>gi|11119420 orthodenticle homeobox 2 isoform a [Homo sapiens]
Length = 297
Score = 51.2 bits (121), Expect = 4e-07
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 16/110 (14%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQ-TRPSLGPANQTTSVKKEE 60
+P + ++A K+ L S V++WFKN+RAK ++QQ+QQ + + PA + TS +E
Sbjct: 70 YPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPAREV 129
Query: 61 TPSAITTANIRPVSPGISDANDHDLREPSGIKNPGGASASARVSSWDSQS 110
+ + T+ P PS P AS+SA VS W S
Sbjct: 130 SSESGTSGQFTP---------------PSSTSVPTIASSSAPVSIWSPAS 164
>gi|27777663 goosecoid [Homo sapiens]
Length = 257
Score = 48.9 bits (115), Expect = 2e-06
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVK 57
+P + T +LA K+ L V++WFKN+RAKW+RQ+R + + N+T+S K
Sbjct: 184 YPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRQKRSSSEESENAEKWNKTSSSK 239
>gi|170784824 paired box 4 [Homo sapiens]
Length = 343
Score = 46.2 bits (108), Expect = 1e-05
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVKK--- 58
+P GKLA+ L V++WF N+RAKW+RQ++ + + + L A+Q +V +
Sbjct: 186 YPDSVARGKLATATSLPEDTVRVWFSNRRAKWRRQEKLKWEMQ--LPGASQGLTVPRVAP 243
Query: 59 -----EETPSAITTANIRPVSP 75
+++P ++ TA + + P
Sbjct: 244 GIISAQQSPGSVPTAALPALEP 265
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 43.9 bits (102), Expect = 7e-05
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRP 45
+P + T +LA +L L + V++WF+N+RAKW+++++ QT P
Sbjct: 352 YPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHP 395
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 43.9 bits (102), Expect = 7e-05
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVKKEET 61
+P + ++A K+ L S V++WFKN+RAK ++QQ+ T+ PA + +S +E +
Sbjct: 62 YPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQSGSGTKSR--PAKKKSSPVRESS 119
Query: 62 PSAITTANIRPVSPGISDANDHDLREPSGIKNPGGASAS 100
S ++ P P +S + S NP A+A+
Sbjct: 120 GSE-SSGQFTP--PAVSSSASSSSSASSSSANPAAAAAA 155
>gi|4885363 goosecoid homeobox 2 [Homo sapiens]
Length = 205
Score = 43.9 bits (102), Expect = 7e-05
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTR 44
+P ++T +LA +++L V++WFKN+RAKW+ Q+R R
Sbjct: 150 YPDVSTRERLAGRIRLREERVEVWFKNRRAKWRHQKRASASAR 192
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 43.1 bits (100), Expect = 1e-04
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQM 41
+P + +LA++L L V++WF+N+RAKWKR QR M
Sbjct: 163 YPDVVARERLAARLNLTEDRVQVWFQNRRAKWKRNQRVLM 202
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 42.4 bits (98), Expect = 2e-04
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQ-----QRQQMQTRPSLGPANQTTS 55
+P + +LA+K+ L + +++WF N+RAKW+R+ QR+Q PS P + + S
Sbjct: 234 YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFS 292
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 42.4 bits (98), Expect = 2e-04
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQ-----QRQQMQTRPSLGPANQTTS 55
+P + +LA+K+ L + +++WF N+RAKW+R+ QR+Q PS P + + S
Sbjct: 248 YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFS 306
>gi|4505615 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 42.4 bits (98), Expect = 2e-04
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQ-----QRQQMQTRPSLGPANQTTS 55
+P + +LA+K+ L + +++WF N+RAKW+R+ QR+Q PS P + + S
Sbjct: 234 YPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFS 292
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 42.4 bits (98), Expect = 2e-04
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 4 SLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQ---TTSVKKEE 60
S A LA+ LQL + VKIWF+N+R KWKRQ +++ P Q V E
Sbjct: 229 SSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLAAELEAASLSPPGAQRLVRVPVLYHE 288
Query: 61 TPSAITTA 68
+P A A
Sbjct: 289 SPPAAAAA 296
>gi|24497526 homeobox B1 [Homo sapiens]
Length = 301
Score = 41.6 bits (96), Expect = 3e-04
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 9/73 (12%)
Query: 4 SLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRP--------SLGPA-NQTT 54
S A ++A+ L+L+ + VKIWF+N+R K K+++R++ + P + G A +Q+T
Sbjct: 229 SRARRVEIAATLELNETQVKIWFQNRRMKQKKREREEGRVPPAPPGCPKEAAGDASDQST 288
Query: 55 SVKKEETPSAITT 67
E +PS++T+
Sbjct: 289 CTSPEASPSSVTS 301
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 41.6 bits (96), Expect = 3e-04
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 12/74 (16%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVKK--- 58
+P + T +LA K+ L + V++WF+N+RAKW++ +R G ++Q K+
Sbjct: 62 YPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTER---------GASDQEPGAKEPMA 112
Query: 59 EETPSAITTANIRP 72
E TP + N P
Sbjct: 113 EVTPPPVRNINSPP 126
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 40.8 bits (94), Expect = 6e-04
Identities = 16/37 (43%), Positives = 28/37 (75%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQR 38
+P + + +LA+K+ L V++WF+N+RAKW+RQ+R
Sbjct: 51 YPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQER 87
>gi|57232759 intestine-specific homeobox [Homo sapiens]
Length = 245
Score = 40.8 bits (94), Expect = 6e-04
Identities = 15/37 (40%), Positives = 28/37 (75%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQR 38
+P + +LA+++ L + V+IWF+NQRAKW++Q++
Sbjct: 106 YPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEK 142
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 40.4 bits (93), Expect = 7e-04
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQ 40
+P ++T ++A L + V++WFKN+RAKW++++R Q
Sbjct: 86 YPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERSQ 124
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 40.4 bits (93), Expect = 7e-04
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQ 40
+P ++T ++A L + V++WFKN+RAKW++++R Q
Sbjct: 116 YPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQ 154
>gi|24234711 paired-like homeodomain transcription factor 2 isoform
a [Homo sapiens]
Length = 271
Score = 40.4 bits (93), Expect = 7e-04
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQ 40
+P ++T ++A L + V++WFKN+RAKW++++R Q
Sbjct: 63 YPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQ 101
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 40.4 bits (93), Expect = 7e-04
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQ 40
+P ++T ++A L + V++WFKN+RAKW++++R Q
Sbjct: 109 YPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERNQ 147
>gi|153945816 Nanog homeobox [Homo sapiens]
Length = 305
Score = 40.0 bits (92), Expect = 0.001
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 8/132 (6%)
Query: 4 SLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVKKEETPS 63
SL M +L++ L L VK WF+NQR K KR Q+ P N +K P+
Sbjct: 121 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNW-------PKNSNGVTQKASAPT 173
Query: 64 AITTANIRPVSPGISDANDHDLREPSGIKNPGGASASARVSSWDSQSYDIEQICLGA-SN 122
+ + ++ + + N ++ + + SW + S++ + C + +N
Sbjct: 174 YPSLYSSYHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNN 233
Query: 123 PPWASTLFEIDE 134
W S + E
Sbjct: 234 QAWNSPFYNCGE 245
>gi|239755732 PREDICTED: similar to Nanog homeobox isoform 1 [Homo
sapiens]
Length = 305
Score = 40.0 bits (92), Expect = 0.001
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 8/132 (6%)
Query: 4 SLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVKKEETPS 63
SL M +L++ L L VK WF+NQR K KR Q+ P N +K P+
Sbjct: 121 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNW-------PKNSNGVTQKASAPT 173
Query: 64 AITTANIRPVSPGISDANDHDLREPSGIKNPGGASASARVSSWDSQSYDIEQICLGA-SN 122
+ + ++ + + N ++ + + SW + S++ + C + +N
Sbjct: 174 YPSLYSSYHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNN 233
Query: 123 PPWASTLFEIDE 134
W S + E
Sbjct: 234 QAWNSPFYNCGE 245
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 40.0 bits (92), Expect = 0.001
Identities = 15/42 (35%), Positives = 30/42 (71%)
Query: 2 HPSLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQT 43
+P + + +LA K+ L V++WF+N+RAKW+RQ++ ++ +
Sbjct: 160 YPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSS 201
>gi|70608170 H6 family homeobox 2 [Homo sapiens]
Length = 273
Score = 39.3 bits (90), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 11 LASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQT 53
LAS LQL + VK WF+N+R KWKRQ +++ + QT
Sbjct: 182 LASSLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASAQT 224
>gi|118582284 msh homeobox 1 [Homo sapiens]
Length = 303
Score = 38.9 bits (89), Expect = 0.002
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 4 SLATMGKLASKLQLDLSVVKIWFKNQRAKWKRQQ-----RQQMQTRPSLGPA 50
S+A + +S L L + VKIWF+N+RAK KR Q + +M +P L PA
Sbjct: 198 SIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPA 249
>gi|4506049 hematopoietically expressed homeobox [Homo sapiens]
Length = 270
Score = 38.9 bits (89), Expect = 0.002
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 18/108 (16%)
Query: 10 KLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVKKEETPSAITTAN 69
+LA LQL VK WF+N+RAKW+R +++ Q S KKEE S ++ +
Sbjct: 169 RLAKMLQLSERQVKTWFQNRRAKWRRLKQENPQ------------SNKKEELESLDSSCD 216
Query: 70 IRPVSPGISDANDHDLREPSGIKNPGGAS---ASARVSSWDSQSYDIE 114
R P S+ N + S +P AS + +S Q DIE
Sbjct: 217 QRQDLP--SEQNKGASLDSSQC-SPSPASQEDLESEISEDSDQEVDIE 261
>gi|5031761 homeobox A1 isoform a [Homo sapiens]
Length = 335
Score = 38.9 bits (89), Expect = 0.002
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Query: 10 KLASKLQLDLSVVKIWFKNQRAKWKRQQRQQMQTRPSLGPANQTTSVKKEETPSAITTAN 69
++A+ LQL+ + VKIWF+N+R K K+++++ + + PA + +K E S ++++
Sbjct: 261 EIAASLQLNETQVKIWFQNRRMKQKKREKEGLL---PISPATPPGNDEKAEESSEKSSSS 317
Query: 70 IRPVSPGISDAN 81
SPG S ++
Sbjct: 318 PCVPSPGSSTSD 329
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,859,966
Number of Sequences: 37866
Number of extensions: 303957
Number of successful extensions: 1371
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1064
Number of HSP's gapped (non-prelim): 329
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.