NANOG 5461

Name: NANOG	Sequence: fasta or formatted (305aa)		NCBI GI: 153945816
Description: Nanog homeobox		Referenced in: Homeobox and Related Proteins Stem Cells and Early Development
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.3 13 2 C cysteine 3.0 9 1 D aspartate 3.3 10 1 E glutamate 4.9 15 2 F phenylalanine 2.6 8 1 G glycine 2.6 8 1 H histidine 1.0 3 1 I isoleucine 1.6 5 1 K lysine 5.9 18 2 L leucine 6.9 21 2 M methionine 3.9 12 1 N asparagine 8.5 26 2 P proline 7.9 24 1 Q glutamine 10.2 31 2 R arginine 2.0 6 1 S serine 13.8 42 2 T threonine 6.9 21 2 V valine 4.3 13 1 W tryptophan 3.6 11 1 Y tyrosine 3.0 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Nanog homeobox LOC100293888 0.997 PREDICTED: similar to Nanog homeobox isoform 1 [Hom... LOC100293888 0.926 PREDICTED: similar to Nanog homeobox isoform 2 [Hom... HOXA3 0.074 homeobox A3 isoform a HOXA3 0.074 homeobox A3 isoform a BARHL1 0.074 BarH-like homeobox 1 DLX3 0.073 distal-less homeobox 3 DLX5 0.071 distal-less homeobox 5 DLX1 0.069 distal-less homeobox 1 isoform 1 HOXA3 0.069 homeobox A3 isoform b TLX3 0.069 T-cell leukemia homeobox 3 BSX 0.068 brain specific homeobox DLX2 0.068 distal-less homeobox 2 DLX6 0.066 distal-less homeobox 6 TLX1 0.066 T-cell leukemia homeobox 1 BARHL2 0.065 BarH-like homeobox 2 HOXB3 0.065 homeobox B3 BARX2 0.065 BarH-like homeobox 2 DLX4 0.063 distal-less homeobox 4 isoform a DLX4 0.063 distal-less homeobox 4 isoform b HOXB2 0.063 homeobox B2 MSX2 0.063 msh homeobox 2 NKX2-2 0.063 NK2 transcription factor related, locus 2 NKX2-8 0.063 NK2 homeobox 8 NKX2-5 0.061 NK2 transcription factor related, locus 5 BARX1 0.060 BarH-like homeobox 1 HMX3 0.060 H6 family homeobox 3 NKX2-3 0.060 NK2 transcription factor related, locus 3 HOXD3 0.060 homeobox D3 HOXB5 0.058 homeobox B5 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.