Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DRGX Sequence: fasta or formatted (268aa) NCBI GI: 122937484
Description:

dorsal root ganglia homeobox

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         26           1
 C cysteine            2.2          6           2
 D aspartate           3.4          9           2
 E glutamate           6.3         17           2
 F phenylalanine       3.7         10           2
 G glycine             6.3         17           2
 H histidine           1.5          4           1
 I isoleucine          1.1          3           1
 K lysine              4.9         13           2
 L leucine             9.3         25           3
 M methionine          2.2          6           1
 N asparagine          3.4          9           1
 P proline             9.0         24           3
 Q glutamine           6.0         16           2
 R arginine            6.7         18           2
 S serine              9.3         25           3
 T threonine           7.5         20           2
 V valine              5.6         15           1
 W tryptophan          0.7          2           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   dorsal root ganglia homeobox 
ARX                   0.217   aristaless related homeobox 
ALX4                  0.188   aristaless-like homeobox 4 
PHOX2A                0.171   paired-like homeobox 2a 
PHOX2B                0.165   paired-like homeobox 2b 
ALX3                  0.163   aristaless-like homeobox 3 
RAX                   0.163   retina and anterior neural fold homeobox 
PITX2                 0.155   paired-like homeodomain transcription factor 2 isofo...
PITX2                 0.155   paired-like homeodomain transcription factor 2 isofo...
PITX2                 0.155   paired-like homeodomain transcription factor 2 isofo...
PAX7                  0.153   paired box 7 isoform 1 
PAX7                  0.153   paired box 7 isoform 2 
PAX7                  0.153   paired box 7 isoform 3 
OTX1                  0.151   orthodenticle homeobox 1 
PRRX1                 0.149   paired mesoderm homeobox 1 isoform pmx-1a 
PRRX1                 0.149   paired mesoderm homeobox 1 isoform pmx-1b 
PITX3                 0.149   paired-like homeodomain 3 
PAX3                  0.149   paired box 3 isoform PAX3i 
PAX3                  0.149   paired box 3 isoform PAX3g 
PAX3                  0.149   paired box 3 isoform PAX3h 
PAX3                  0.149   paired box 3 isoform PAX3e 
PAX3                  0.149   paired box 3 isoform PAX3d 
PAX3                  0.149   paired box 3 isoform PAX3 
PITX1                 0.147   paired-like homeodomain transcription factor 1 [Hom...
PRRX2                 0.147   paired related homeobox 2 
SHOX2                 0.145   short stature homeobox 2 isoform b 
ALX1                  0.145   cartilage paired-class homeoprotein 1 
SHOX                  0.143   short stature homeobox isoform SHOXa 
PAX6                  0.143   paired box gene 6 isoform a 
PAX6                  0.143   paired box gene 6 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press