LOC100293888 22516

Name: LOC100293888	Sequence: fasta or formatted (305aa)		NCBI GI: 239755732
Description: PREDICTED: similar to Nanog homeobox isoform 1		Referenced in: Homeobox and Related Proteins
Other entries for this name: alt prot [289aa] PREDICTED: similar to Nanog homeobox isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.3 13 2 C cysteine 3.0 9 1 D aspartate 3.3 10 1 E glutamate 4.9 15 2 F phenylalanine 2.6 8 1 G glycine 2.6 8 1 H histidine 1.0 3 1 I isoleucine 1.6 5 1 K lysine 5.6 17 2 L leucine 6.9 21 2 M methionine 3.9 12 1 N asparagine 8.9 27 2 P proline 7.9 24 1 Q glutamine 10.2 31 2 R arginine 2.0 6 1 S serine 13.8 42 2 T threonine 6.9 21 2 V valine 4.3 13 1 W tryptophan 3.6 11 1 Y tyrosine 3.0 9 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to Nanog homeobox isoform 1 [Hom... NANOG 0.997 Nanog homeobox LOC100293888 0.929 PREDICTED: similar to Nanog homeobox isoform 2 [Hom... HOXA3 0.076 homeobox A3 isoform a HOXA3 0.076 homeobox A3 isoform a DLX3 0.074 distal-less homeobox 3 BARHL1 0.073 BarH-like homeobox 1 DLX5 0.069 distal-less homeobox 5 DLX1 0.069 distal-less homeobox 1 isoform 1 HOXA3 0.069 homeobox A3 isoform b BSX 0.068 brain specific homeobox TLX3 0.068 T-cell leukemia homeobox 3 DLX6 0.066 distal-less homeobox 6 TLX1 0.066 T-cell leukemia homeobox 1 DLX2 0.066 distal-less homeobox 2 BARX2 0.065 BarH-like homeobox 2 HOXB3 0.065 homeobox B3 BARHL2 0.065 BarH-like homeobox 2 HOXB2 0.065 homeobox B2 NKX2-2 0.063 NK2 transcription factor related, locus 2 DLX4 0.063 distal-less homeobox 4 isoform b MSX2 0.063 msh homeobox 2 DLX4 0.063 distal-less homeobox 4 isoform a NKX2-8 0.063 NK2 homeobox 8 BARX1 0.060 BarH-like homeobox 1 HOXD3 0.060 homeobox D3 NKX2-1 0.060 thyroid transcription factor 1 isoform 1 NKX2-1 0.060 thyroid transcription factor 1 isoform 2 NKX2-3 0.060 NK2 transcription factor related, locus 3 NKX2-5 0.058 NK2 transcription factor related, locus 5 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.