Guide to the Human Genome
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Name: ARGFX Sequence: fasta or formatted (315aa) NCBI GI: 61969666
Description:

arginine-fifty homeobox

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         20           2
 C cysteine            1.0          3           1
 D aspartate           4.4         14           1
 E glutamate           4.8         15           2
 F phenylalanine       5.4         17           1
 G glycine             2.5          8           2
 H histidine           1.0          3           1
 I isoleucine          3.2         10           2
 K lysine              4.1         13           2
 L leucine             8.9         28           2
 M methionine          2.2          7           1
 N asparagine          5.1         16           1
 P proline             8.9         28           2
 Q glutamine           7.6         24           5
 R arginine            5.1         16           3
 S serine             13.7         43           4
 T threonine           6.7         21           2
 V valine              3.8         12           1
 W tryptophan          1.6          5           1
 Y tyrosine            3.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   arginine-fifty homeobox 
CRX                   0.181   cone-rod homeobox protein 
OTX2                  0.127   orthodenticle homeobox 2 isoform a 
OTX2                  0.124   orthodenticle homeobox 2 isoform b 
OTX1                  0.091   orthodenticle homeobox 1 
PAX6                  0.081   paired box gene 6 isoform a 
PAX6                  0.081   paired box gene 6 isoform b 
PAX6                  0.081   paired box gene 6 isoform a 
PHOX2A                0.080   paired-like homeobox 2a 
ALX3                  0.077   aristaless-like homeobox 3 
ALX1                  0.077   cartilage paired-class homeoprotein 1 
DRGX                  0.077   dorsal root ganglia homeobox 
PAX3                  0.075   paired box 3 isoform PAX3i 
PAX3                  0.075   paired box 3 isoform PAX3g 
PAX3                  0.075   paired box 3 isoform PAX3h 
PAX3                  0.075   paired box 3 isoform PAX3e 
PAX3                  0.075   paired box 3 isoform PAX3d 
PAX3                  0.075   paired box 3 isoform PAX3 
LEUTX                 0.075   leucine twenty homeobox 
PRRX2                 0.075   paired related homeobox 2 
GSC                   0.073   goosecoid 
PAX7                  0.073   paired box 7 isoform 1 
PAX7                  0.073   paired box 7 isoform 2 
PAX7                  0.073   paired box 7 isoform 3 
PHOX2B                0.073   paired-like homeobox 2b 
UNCX                  0.073   UNC homeobox 
ALX4                  0.072   aristaless-like homeobox 4 
DMBX1                 0.072   diencephalon/mesencephalon homeobox 1 isoform b [Hom...
DMBX1                 0.072   diencephalon/mesencephalon homeobox 1 isoform a [Hom...
ARX                   0.072   aristaless related homeobox 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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