Guide to the Human Genome
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Name: PITX3 Sequence: fasta or formatted (302aa) NCBI GI: 4826912
Description:

paired-like homeodomain 3

Referenced in:

Homeobox and Related Proteins
Left-Right Axis
Pituitary

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.6         47           9
 C cysteine            1.7          5           1
 D aspartate           1.7          5           1
 E glutamate           5.6         17           2
 F phenylalanine       3.3         10           1
 G glycine             7.6         23           3
 H histidine           2.0          6           1
 I isoleucine          0.7          2           1
 K lysine              4.3         13           3
 L leucine             7.6         23           2
 M methionine          1.0          3           1
 N asparagine          2.6          8           1
 P proline            11.9         36           3
 Q glutamine           4.6         14           2
 R arginine            5.6         17           2
 S serine             11.3         34           2
 T threonine           3.0          9           1
 V valine              5.3         16           1
 W tryptophan          1.3          4           1
 Y tyrosine            3.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   paired-like homeodomain 3 
PITX2                 0.462   paired-like homeodomain transcription factor 2 isofo...
PITX2                 0.460   paired-like homeodomain transcription factor 2 isofo...
PITX2                 0.460   paired-like homeodomain transcription factor 2 isofo...
PITX1                 0.431   paired-like homeodomain transcription factor 1 [Hom...
ARX                   0.171   aristaless related homeobox 
RAX                   0.142   retina and anterior neural fold homeobox 
ALX4                  0.142   aristaless-like homeobox 4 
PAX7                  0.137   paired box 7 isoform 1 
PAX7                  0.137   paired box 7 isoform 2 
PAX7                  0.137   paired box 7 isoform 3 
ALX1                  0.134   cartilage paired-class homeoprotein 1 
ALX3                  0.132   aristaless-like homeobox 3 
OTX1                  0.132   orthodenticle homeobox 1 
DRGX                  0.130   dorsal root ganglia homeobox 
PHOX2B                0.129   paired-like homeobox 2b 
PHOX2A                0.129   paired-like homeobox 2a 
CRX                   0.127   cone-rod homeobox protein 
SHOX2                 0.127   short stature homeobox 2 isoform a 
PAX3                  0.125   paired box 3 isoform PAX3i 
PAX3                  0.125   paired box 3 isoform PAX3g 
PAX3                  0.125   paired box 3 isoform PAX3h 
PAX3                  0.125   paired box 3 isoform PAX3e 
PAX3                  0.125   paired box 3 isoform PAX3d 
PAX3                  0.125   paired box 3 isoform PAX3 
DMBX1                 0.124   diencephalon/mesencephalon homeobox 1 isoform b [Hom...
DMBX1                 0.124   diencephalon/mesencephalon homeobox 1 isoform a [Hom...
SHOX                  0.118   short stature homeobox isoform SHOXa 
UNCX                  0.117   UNC homeobox 
SHOX2                 0.115   short stature homeobox 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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