Guide to the Human Genome
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Name: HOXA1 Sequence: fasta or formatted (335aa) NCBI GI: 5031761
Description:

homeobox A1 isoform a

Referenced in:

HOX Genes

Other entries for this name:
alt prot [137aa] homeobox A1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         25           2
 C cysteine            2.1          7           1
 D aspartate           2.7          9           2
 E glutamate           5.1         17           2
 F phenylalanine       2.7          9           1
 G glycine             7.8         26           2
 H histidine           7.2         24          10
 I isoleucine          2.1          7           1
 K lysine              4.2         14           2
 L leucine             5.7         19           2
 M methionine          1.5          5           1
 N asparagine          4.8         16           2
 P proline             7.5         25           2
 Q glutamine           6.0         20           1
 R arginine            4.2         14           2
 S serine             13.7         46           4
 T threonine           6.0         20           2
 V valine              4.2         14           1
 W tryptophan          0.6          2           1
 Y tyrosine            4.8         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homeobox A1 isoform a 
HOXA1                 0.343   homeobox A1 isoform b 
HOXB1                 0.270   homeobox B1 
HOXD1                 0.196   homeobox D1 
HOXB2                 0.109   homeobox B2 
HOXD4                 0.109   homeobox D4 
HOXC4                 0.109   homeobox C4 
HOXC4                 0.109   homeobox C4 
HOXD3                 0.103   homeobox D3 
HOXA5                 0.099   homeobox A5 
HOXA4                 0.099   homeobox A4 
HOXA3                 0.097   homeobox A3 isoform a 
HOXA3                 0.097   homeobox A3 isoform a 
HOXB4                 0.097   homeobox B4 
MEOX2                 0.097   mesenchyme homeobox 2 
HOXA2                 0.096   homeobox A2 
HOXA6                 0.093   homeobox A6 
HOXA7                 0.091   homeobox A7 
HOXC5                 0.091   homeobox C5 
CDX2                  0.091   caudal type homeobox 2 
MNX1                  0.091   homeo box HB9 
HOXC8                 0.091   homeobox C8 
HOXB5                 0.091   homeobox B5 
HOXB6                 0.090   homeobox B6 
PDX1                  0.088   pancreatic and duodenal homeobox 1 
HOXA9                 0.088   homeobox A9 
HOXD8                 0.087   homeobox D8 
HOXA3                 0.087   homeobox A3 isoform b 
HOXB7                 0.087   homeobox B7 
HOXB3                 0.087   homeobox B3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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