Guide to the Human Genome
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Name: MSX1 Sequence: fasta or formatted (303aa) NCBI GI: 118582284
Description:

msh homeobox 1

Referenced in:

Homeobox and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.5         53           4
 C cysteine            0.3          1           1
 D aspartate           2.0          6           1
 E glutamate           5.6         17           2
 F phenylalanine       3.6         11           1
 G glycine             8.6         26           3
 H histidine           1.7          5           1
 I isoleucine          0.7          2           1
 K lysine              6.6         20           1
 L leucine            10.2         31           2
 M methionine          2.6          8           1
 N asparagine          0.7          2           1
 P proline            11.9         36           3
 Q glutamine           3.6         11           1
 R arginine            5.3         16           2
 S serine              8.6         26           3
 T threonine           4.0         12           2
 V valine              4.3         13           1
 W tryptophan          0.7          2           1
 Y tyrosine            1.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   msh homeobox 1 
MSX2                  0.423   msh homeobox 2 
DLX2                  0.122   distal-less homeobox 2 
NKX1-2                0.120   NK1 homeobox 2 
NKX1-2                0.120   PREDICTED: NK1 homeobox 2 
NKX1-2                0.120   PREDICTED: NK1 homeobox 2 
NKX1-2                0.120   PREDICTED: NK1 homeobox 2 
DLX4                  0.111   distal-less homeobox 4 isoform a 
NKX2-5                0.108   NK2 transcription factor related, locus 5 
NKX2-6                0.106   NK2 transcription factor related, locus 6 
RAX                   0.106   retina and anterior neural fold homeobox 
TLX1                  0.104   T-cell leukemia homeobox 1 
EMX1                  0.103   empty spiracles homolog 1 
DLX1                  0.101   distal-less homeobox 1 isoform 1 
NKX1-1                0.099   PREDICTED: NK1 homeobox 1 
NKX2-3                0.099   NK2 transcription factor related, locus 3 
MNX1                  0.099   homeo box HB9 
DLX4                  0.099   distal-less homeobox 4 isoform b 
BSX                   0.099   brain specific homeobox 
TLX2                  0.099   T-cell leukemia homeobox 2 
HMX3                  0.097   H6 family homeobox 3 
NKX1-1                0.097   PREDICTED: HPX-153 homeobox 
TLX3                  0.097   T-cell leukemia homeobox 3 
HMX2                  0.097   H6 family homeobox 2 
DLX5                  0.096   distal-less homeobox 5 
NKX6-2                0.096   NK6 transcription factor related, locus 2 
DLX6                  0.096   distal-less homeobox 6 
HMX1                  0.096   homeo box (H6 family) 1 
HOXB2                 0.096   homeobox B2 
DLX3                  0.094   distal-less homeobox 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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