Guide to the Human Genome
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Name: HOXB1 Sequence: fasta or formatted (301aa) NCBI GI: 24497526
Description:

homeobox B1

Referenced in:

HOX Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         29           2
 C cysteine            1.7          5           1
 D aspartate           3.0          9           1
 E glutamate           6.3         19           2
 F phenylalanine       3.7         11           1
 G glycine             9.6         29           3
 H histidine           1.3          4           1
 I isoleucine          0.7          2           1
 K lysine              4.0         12           2
 L leucine             5.3         16           2
 M methionine          1.3          4           1
 N asparagine          3.7         11           1
 P proline            13.0         39           2
 Q glutamine           5.0         15           2
 R arginine            5.0         15           2
 S serine             12.3         37           2
 T threonine           5.6         17           2
 V valine              2.7          8           1
 W tryptophan          0.7          2           1
 Y tyrosine            5.6         17           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homeobox B1 
HOXA1                 0.301   homeobox A1 isoform a 
HOXD1                 0.211   homeobox D1 
HOXD4                 0.140   homeobox D4 
HOXB2                 0.135   homeobox B2 
HOXD3                 0.130   homeobox D3 
HOXA3                 0.127   homeobox A3 isoform a 
HOXA3                 0.127   homeobox A3 isoform a 
HOXA4                 0.127   homeobox A4 
MNX1                  0.124   homeo box HB9 
HOXC4                 0.120   homeobox C4 
HOXC4                 0.120   homeobox C4 
HOXB3                 0.120   homeobox B3 
CDX2                  0.119   caudal type homeobox 2 
CDX1                  0.119   caudal type homeobox 1 
HOXA5                 0.117   homeobox A5 
HOXB4                 0.114   homeobox B4 
HOXA2                 0.110   homeobox A2 
HOXA10                0.110   homeobox A10 isoform a 
HOXA3                 0.109   homeobox A3 isoform b 
HOXA7                 0.105   homeobox A7 
HOXB6                 0.105   homeobox B6 
HOXB7                 0.102   homeobox B7 
HOXD8                 0.099   homeobox D8 
HOXB9                 0.097   homeobox B9 
HOXC5                 0.094   homeobox C5 
HOXD9                 0.094   homeobox D9 
HOXB5                 0.094   homeobox B5 
PDX1                  0.092   pancreatic and duodenal homeobox 1 
GSX1                  0.091   GS homeobox 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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