Guide to the Human Genome
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Name: CHAC1 Sequence: fasta or formatted (219aa) NCBI GI: 218563700
Description:

ChaC, cation transport regulator-like 1 isoform b

Referenced in:

Additional Conserved Proteins

Other entries for this name:
alt prot [264aa] ChaC, cation transport regulator-like 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         21           2
 C cysteine            2.7          6           1
 D aspartate           5.0         11           1
 E glutamate           4.6         10           2
 F phenylalanine       4.6         10           1
 G glycine            11.0         24           2
 H histidine           2.3          5           1
 I isoleucine          2.3          5           1
 K lysine              0.9          2           1
 L leucine             7.8         17           2
 M methionine          2.3          5           1
 N asparagine          1.8          4           1
 P proline            10.5         23           2
 Q glutamine           6.8         15           1
 R arginine            7.3         16           2
 S serine              5.5         12           1
 T threonine           4.6         10           1
 V valine              5.9         13           2
 W tryptophan          1.8          4           1
 Y tyrosine            2.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ChaC, cation transport regulator-like 1 isoform b [... 
CHAC1                 0.952   ChaC, cation transport regulator-like 1 isoform a [...
CHAC2                 0.241   ChaC, cation transport regulator-like 2 
SYN1                  0.027   synapsin I isoform Ia 
SYN1                  0.027   synapsin I isoform Ib 
MYO15A                0.027   myosin XV 
MAP7D1                0.025   MAP7 domain containing 1 
RAPH1                 0.023   Ras association and pleckstrin homology domains 1 is...
SCRIB                 0.023   scribble isoform b 
SCRIB                 0.023   scribble isoform a 
NACA                  0.023   nascent polypeptide-associated complex alpha subuni...
CACNG8                0.018   voltage-dependent calcium channel gamma-8 subunit [H...
CPSF6                 0.016   cleavage and polyadenylation specific factor 6, 68 ...
KHSRP                 0.016   KH-type splicing regulatory protein 
ZNF185                0.016   zinc finger protein 185 
BAHD1                 0.016   bromo adjacent homology domain containing 1 
C10orf95              0.016   hypothetical protein LOC79946 
FMN1                  0.016   formin 1 
BCL2                  0.016   B-cell lymphoma protein 2 beta isoform 
BCL2                  0.016   B-cell lymphoma protein 2 alpha isoform 
ADAM15                0.016   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.016   a disintegrin and metalloproteinase domain 15 isofor...
CNTNAP1               0.016   contactin associated protein 1 precursor 
LOC284297             0.014   hypothetical protein LOC284297 
LOC100133142          0.014   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100291029          0.014   PREDICTED: hypothetical protein XP_002347124 
LOC100133142          0.014   PREDICTED: similar to zinc finger protein 208 [Homo...
XKR6                  0.014   XK, Kell blood group complex subunit-related family,...
PELP1                 0.014   proline, glutamic acid and leucine rich protein 1 [...
EPN1                  0.014   epsin 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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