Guide to the Human Genome
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Name: CHAC1 Sequence: fasta or formatted (264aa) NCBI GI: 218563698
Description:

ChaC, cation transport regulator-like 1 isoform a

Referenced in:

Additional Conserved Proteins

Other entries for this name:
alt prot [219aa] ChaC, cation transport regulator-like 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         27           2
 C cysteine            2.3          6           1
 D aspartate           5.3         14           1
 E glutamate           4.5         12           2
 F phenylalanine       4.2         11           1
 G glycine             9.8         26           2
 H histidine           1.9          5           1
 I isoleucine          1.9          5           1
 K lysine              2.3          6           1
 L leucine             8.3         22           2
 M methionine          1.9          5           1
 N asparagine          1.9          5           1
 P proline            10.2         27           2
 Q glutamine           6.8         18           1
 R arginine            6.4         17           2
 S serine              4.9         13           1
 T threonine           4.9         13           1
 V valine              6.8         18           2
 W tryptophan          1.5          4           1
 Y tyrosine            3.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ChaC, cation transport regulator-like 1 isoform a [... 
CHAC1                 0.792   ChaC, cation transport regulator-like 1 isoform b [...
CHAC2                 0.291   ChaC, cation transport regulator-like 2 
SYN1                  0.023   synapsin I isoform Ia 
SYN1                  0.023   synapsin I isoform Ib 
MYO15A                0.023   myosin XV 
MAP7D1                0.021   MAP7 domain containing 1 
RAPH1                 0.019   Ras association and pleckstrin homology domains 1 is...
SCRIB                 0.019   scribble isoform b 
SCRIB                 0.019   scribble isoform a 
NACA                  0.019   nascent polypeptide-associated complex alpha subuni...
CACNG8                0.015   voltage-dependent calcium channel gamma-8 subunit [H...
CPSF6                 0.013   cleavage and polyadenylation specific factor 6, 68 ...
KHSRP                 0.013   KH-type splicing regulatory protein 
ZNF185                0.013   zinc finger protein 185 
BAHD1                 0.013   bromo adjacent homology domain containing 1 
C10orf95              0.013   hypothetical protein LOC79946 
FMN1                  0.013   formin 1 
BCL2                  0.013   B-cell lymphoma protein 2 beta isoform 
BCL2                  0.013   B-cell lymphoma protein 2 alpha isoform 
ADAM15                0.013   a disintegrin and metalloproteinase domain 15 isofor...
ADAM15                0.013   a disintegrin and metalloproteinase domain 15 isofor...
CNTNAP1               0.013   contactin associated protein 1 precursor 
LOC284297             0.011   hypothetical protein LOC284297 
LOC100133142          0.011   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100291029          0.011   PREDICTED: hypothetical protein XP_002347124 
LOC100133142          0.011   PREDICTED: similar to zinc finger protein 208 [Homo...
XKR6                  0.011   XK, Kell blood group complex subunit-related family,...
PELP1                 0.011   proline, glutamic acid and leucine rich protein 1 [...
EPN1                  0.011   epsin 1 isoform c 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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