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Search of human proteins with 218563698
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|218563698 ChaC, cation transport regulator-like 1 isoform a
[Homo sapiens]
(264 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|218563698 ChaC, cation transport regulator-like 1 isoform a [... 554 e-158
gi|218563700 ChaC, cation transport regulator-like 1 isoform b [... 444 e-125
gi|56790287 ChaC, cation transport regulator-like 2 [Homo sapiens] 179 2e-45
gi|19924099 synapsin I isoform Ia [Homo sapiens] 37 0.014
gi|19924097 synapsin I isoform Ib [Homo sapiens] 37 0.014
gi|118402590 myosin XV [Homo sapiens] 37 0.018
gi|78042577 MAP7 domain containing 1 [Homo sapiens] 36 0.030
gi|47132519 Ras association and pleckstrin homology domains 1 is... 35 0.051
gi|45827729 scribble isoform b [Homo sapiens] 35 0.051
gi|45827731 scribble isoform a [Homo sapiens] 35 0.051
gi|163965366 nascent polypeptide-associated complex alpha subuni... 35 0.051
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 33 0.33
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 32 0.44
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 32 0.44
gi|148298722 zinc finger protein 185 [Homo sapiens] 32 0.57
gi|139394604 bromo adjacent homology domain containing 1 [Homo s... 32 0.57
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 32 0.57
gi|157168329 formin 1 [Homo sapiens] 32 0.74
gi|72198346 B-cell lymphoma protein 2 beta isoform [Homo sapiens] 32 0.74
gi|72198189 B-cell lymphoma protein 2 alpha isoform [Homo sapiens] 32 0.74
gi|46909600 a disintegrin and metalloproteinase domain 15 isofor... 32 0.74
gi|46909598 a disintegrin and metalloproteinase domain 15 isofor... 32 0.74
gi|4505463 contactin associated protein 1 precursor [Homo sapiens] 32 0.74
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 31 0.97
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 31 0.97
gi|239749704 PREDICTED: hypothetical protein XP_002347124 [Homo ... 31 0.97
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 31 0.97
gi|89886484 XK, Kell blood group complex subunit-related family,... 31 0.97
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 31 0.97
gi|41350201 epsin 1 isoform c [Homo sapiens] 31 0.97
>gi|218563698 ChaC, cation transport regulator-like 1 isoform a
[Homo sapiens]
Length = 264
Score = 554 bits (1428), Expect = e-158
Identities = 264/264 (100%), Positives = 264/264 (100%)
Query: 1 MGGAQLELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPT 60
MGGAQLELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPT
Sbjct: 1 MGGAQLELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPT 60
Query: 61 PSAQFPRNDGDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMP 120
PSAQFPRNDGDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMP
Sbjct: 61 PSAQFPRNDGDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMP 120
Query: 121 GRVVTLLEDHEGCTWGVAYQVQGEQVSKALKYLNVREAVLGGYDTKEVTFYPQDAPDQPL 180
GRVVTLLEDHEGCTWGVAYQVQGEQVSKALKYLNVREAVLGGYDTKEVTFYPQDAPDQPL
Sbjct: 121 GRVVTLLEDHEGCTWGVAYQVQGEQVSKALKYLNVREAVLGGYDTKEVTFYPQDAPDQPL 180
Query: 181 KALAYVATPQNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHL 240
KALAYVATPQNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHL
Sbjct: 181 KALAYVATPQNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHL 240
Query: 241 AAIVDAVGTMLPCFCPTEQALALV 264
AAIVDAVGTMLPCFCPTEQALALV
Sbjct: 241 AAIVDAVGTMLPCFCPTEQALALV 264
>gi|218563700 ChaC, cation transport regulator-like 1 isoform b
[Homo sapiens]
Length = 219
Score = 444 bits (1141), Expect = e-125
Identities = 219/264 (82%), Positives = 219/264 (82%), Gaps = 45/264 (17%)
Query: 1 MGGAQLELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPT 60
MGGAQLELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPT
Sbjct: 1 MGGAQLELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPT 60
Query: 61 PSAQFPRNDGDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMP 120
PSAQFPRNDGDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMP
Sbjct: 61 PSAQFPRNDGDPQALWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMP 120
Query: 121 GRVVTLLEDHEGCTWGVAYQVQGEQVSKALKYLNVREAVLGGYDTKEVTFYPQDAPDQPL 180
GRVVTLLEDHEGCTWGVAYQVQGE
Sbjct: 121 GRVVTLLEDHEGCTWGVAYQVQGE------------------------------------ 144
Query: 181 KALAYVATPQNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHL 240
QNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHL
Sbjct: 145 ---------QNPGYLGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHL 195
Query: 241 AAIVDAVGTMLPCFCPTEQALALV 264
AAIVDAVGTMLPCFCPTEQALALV
Sbjct: 196 AAIVDAVGTMLPCFCPTEQALALV 219
>gi|56790287 ChaC, cation transport regulator-like 2 [Homo sapiens]
Length = 184
Score = 179 bits (454), Expect = 2e-45
Identities = 87/169 (51%), Positives = 107/169 (63%), Gaps = 2/169 (1%)
Query: 75 LWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCT 134
+W+FGYGSL+W+ DF Y D VG++ YSRRFWQG T HRG PGRVVTL+ED GC
Sbjct: 1 MWVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCV 60
Query: 135 WGVAYQVQGEQVSKALKYLNVREAVLGGYDTKEVTFYPQDAPDQPLKALAYVATPQNPGY 194
WGVAY++ + + YL+ RE GGY T V FYP+D +P L Y+ T NP Y
Sbjct: 61 WGVAYRLPVGKEEEVKAYLDFREK--GGYRTTTVIFYPKDPTTKPFSVLLYIGTCDNPDY 118
Query: 195 LGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHLAAI 243
LGPAP E IA QI G SG N EYL LA+ ++ P+ DEHL A+
Sbjct: 119 LGPAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNLVPEEADEHLFAL 167
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 37.4 bits (85), Expect = 0.014
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 10 SGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNT-PPTSQSPTPSAQFPRN 68
SGA PG R+ P++PPGP Q P T PPT+Q P PS P
Sbjct: 578 SGAPPGGQQRQG-------PPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAG 630
Query: 69 DGDPQ 73
PQ
Sbjct: 631 RPKPQ 635
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 37.4 bits (85), Expect = 0.014
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 10 SGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNT-PPTSQSPTPSAQFPRN 68
SGA PG R+ P++PPGP Q P T PPT+Q P PS P
Sbjct: 578 SGAPPGGQQRQG-------PPQKPPGPAGPTRQASQAGPVPRTGPPTTQQPRPSGPGPAG 630
Query: 69 DGDPQ 73
PQ
Sbjct: 631 RPKPQ 635
>gi|118402590 myosin XV [Homo sapiens]
Length = 3530
Score = 37.0 bits (84), Expect = 0.018
Identities = 28/79 (35%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 14 PGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESA-----APNTPPTSQSPTPSAQFPRN 68
P V R RA + + RRPP P P P T+ SA P PP+S P P
Sbjct: 625 PIVLRRAQPRARSSNDARRPPAPQPAPRTLSHWSALLSPPVPPRPPSSGPPPAPPLSPAL 684
Query: 69 DGDPQALWIFGYGSLVWRP 87
G P+ YGSL P
Sbjct: 685 SGLPRP--ASPYGSLRRHP 701
Score = 28.9 bits (63), Expect = 4.8
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 12/48 (25%)
Query: 2 GGAQLELPS--------GARPGVCVRRSFRAHAGDQPRRPPGPIPVPG 41
G A LE P+ G +PG + D PRRPP P P+PG
Sbjct: 2402 GDADLEKPTAIAYRMKGGGQPG----GGSSSGTEDTPRRPPEPKPIPG 2445
>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
Length = 841
Score = 36.2 bits (82), Expect = 0.030
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 3 GAQLELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPS 62
G + EL +GA P V R P P P P P + P+TPP ++ T S
Sbjct: 4 GPRAELGAGAPPAVVARTP--PEPRPSPEGDPSPPPPPMSALVPDTPPDTPPAMKNATSS 61
Query: 63 AQFPRNDGDP 72
Q P P
Sbjct: 62 KQLPLEPESP 71
Score = 28.9 bits (63), Expect = 4.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 29 QPRRPPGPI-PVPGTMKQESAAPNTPPTSQSPTPSAQFPRNDGDPQ 73
+P P G + P P ++ES P++ S+ PTP A PR+ P+
Sbjct: 67 EPESPSGQVGPRPAPPQEES--PSSEAKSRGPTPPAMGPRDARPPR 110
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 35.4 bits (80), Expect = 0.051
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 30 PRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPS------AQFP 66
P PP P+P P KQ+S PP+ SP PS +QFP
Sbjct: 828 PPTPPVPVPPPTLPKQQSFCAKPPPSPLSPVPSVVKQIASQFP 870
Score = 28.1 bits (61), Expect = 8.2
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 30 PRRPPGPIPVPGTMKQESAAPNTPPTSQSPTP 61
P PP P+P P P PP + SPTP
Sbjct: 928 PPPPPSPVPAP---------PPPPPPTASPTP 950
>gi|45827729 scribble isoform b [Homo sapiens]
Length = 1630
Score = 35.4 bits (80), Expect = 0.051
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 3 GAQLELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPS 62
G+ +PSGA G + S + +G QP PP P +P +KQ A PTS P +
Sbjct: 1278 GSVQRVPSGAAGGK-MAESPCSPSGQQPPSPPSPDELPANVKQAYRAFAAVPTSHPPEDA 1336
Query: 63 AQFPRNDG 70
P G
Sbjct: 1337 PAQPPTPG 1344
>gi|45827731 scribble isoform a [Homo sapiens]
Length = 1655
Score = 35.4 bits (80), Expect = 0.051
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 3 GAQLELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPS 62
G+ +PSGA G + S + +G QP PP P +P +KQ A PTS P +
Sbjct: 1278 GSVQRVPSGAAGGK-MAESPCSPSGQQPPSPPSPDELPANVKQAYRAFAAVPTSHPPEDA 1336
Query: 63 AQFPRNDG 70
P G
Sbjct: 1337 PAQPPTPG 1344
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 35.4 bits (80), Expect = 0.051
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 30 PRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPSAQFPRNDGDP 72
P P G +P T P TP + + PTP A P + G P
Sbjct: 1340 PPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHKGGP 1382
Score = 28.9 bits (63), Expect = 4.8
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 27 GDQPRRPP--GPIPVPGTMKQESAAPNTPPTSQSPTPSAQFP 66
G PP P P T +P TPP +PTP A P
Sbjct: 1299 GGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVTP 1340
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 32.7 bits (73), Expect = 0.33
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 14/74 (18%)
Query: 2 GGAQLELPSGARPG-VCVRRSFRAHAGDQ-------PRRPPGPIP------VPGTMKQES 47
GGA E G G + + +F AG P PP P P PGT+ +E+
Sbjct: 351 GGAGAERDRGGASGFLTLHNAFPKEAGGGVTVTVTGPPAPPAPAPPAPSAPAPGTLAKEA 410
Query: 48 AAPNTPPTSQSPTP 61
AA NT ++ TP
Sbjct: 411 AASNTNTLNRKTTP 424
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 32.3 bits (72), Expect = 0.44
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 27 GDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPSAQ-----FPRNDGDP 72
G P RPPGP+ P T+ P PP + P P P N G P
Sbjct: 321 GPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMP 371
Score = 28.9 bits (63), Expect = 4.8
Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 27 GDQPRRPP---GPIPVPGTMKQESAAPNTPPTSQSPTPSAQFPRNDGDPQA 74
G P PP GP P PG P PP + +P P P P A
Sbjct: 304 GPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPA 354
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 32.3 bits (72), Expect = 0.44
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 21 SFRAHAGDQPRRP-PGPIPVPGTMKQESAAPNTPPTSQS 58
++ +H QP P PGP P P + P PPT QS
Sbjct: 578 AYYSHYYQQPPGPVPGPAPAPAAPPAQGEPPQPPPTGQS 616
>gi|148298722 zinc finger protein 185 [Homo sapiens]
Length = 689
Score = 32.0 bits (71), Expect = 0.57
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 28 DQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPSAQFPRND 69
D+P P G P Q+ A P+TP SP+ S QF R +
Sbjct: 489 DRPGAPRGGQGDPAVPTQQPADPSTPEQQNSPSGSEQFVRRE 530
Score = 30.4 bits (67), Expect = 1.7
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 3 GAQLELPSGARPGVCVRRSFRAHAGDQPR-RPPGPIPVPGTMKQESAAPNTPPTSQSPTP 61
G +ELPSG R + + AG+ P+ RPP G + + T P S P
Sbjct: 50 GRTIELPSGRS-----RATSFSSAGEVPKPRPPSTRAPTGYIIR---GVFTKPIDSSSQP 101
Query: 62 SAQFPRNDGDPQA 74
QFP+ +G P++
Sbjct: 102 QQQFPKANGTPKS 114
Score = 28.1 bits (61), Expect = 8.2
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 28 DQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPSAQFPRND 69
++P P G P Q+ A P+TP SP+ S Q R +
Sbjct: 423 ERPGAPRGGQGDPAVPAQQPADPSTPERQSSPSGSEQLVRRE 464
>gi|139394604 bromo adjacent homology domain containing 1 [Homo
sapiens]
Length = 780
Score = 32.0 bits (71), Expect = 0.57
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 6 LELPSGARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPSAQF 65
LE P G RP + + +A +P RP P P KQE P+ P SP P
Sbjct: 304 LESPLGLRPHLPLLMGGQAALKPEPGRPGEESPAP---KQELHQPSFPTPQLSPLP---M 357
Query: 66 PRNDGDPQALWI 77
P N D L +
Sbjct: 358 PGNPADYNGLCV 369
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 32.0 bits (71), Expect = 0.57
Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Query: 10 SGARPGVCVRRSFRAHAG----------DQPRRPPGPIPVPGTMKQESAAPNTPPTSQ 57
S A PG C+R S R H +PRRP GP P + A P PP S+
Sbjct: 86 SAAGPGACMRASGRPHGNTTASTAPPRHPRPRRPGGPALRP--TPRPCAGPAPPPASR 141
>gi|157168329 formin 1 [Homo sapiens]
Length = 1196
Score = 31.6 bits (70), Expect = 0.74
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 30 PRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPSAQFPRNDGDP 72
P PP P P P SA P PP P P++ P N G P
Sbjct: 678 PPLPPPPPPPPPLPPPSSAGP-PPPPPPPPLPNSPAPPNPGGP 719
>gi|72198346 B-cell lymphoma protein 2 beta isoform [Homo sapiens]
Length = 205
Score = 31.6 bits (70), Expect = 0.74
Identities = 31/124 (25%), Positives = 43/124 (34%), Gaps = 9/124 (7%)
Query: 19 RRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSP---TPSAQFPRNDGDPQAL 75
+R + AGD PPG P PG + P S+ P T Q P G
Sbjct: 25 QRGYEWDAGDVGAAPPGAAPAPGIFSSQPGHTPHPAASRDPVARTSPLQTPAAPGAAAGP 84
Query: 76 WIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQ-GDTFHRGSDKMPGRVVTLLED--HEG 132
+ +V + F R Y R F + H GR T++E+ +G
Sbjct: 85 ALSPVPPVV---HLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDG 141
Query: 133 CTWG 136
WG
Sbjct: 142 VNWG 145
>gi|72198189 B-cell lymphoma protein 2 alpha isoform [Homo sapiens]
Length = 239
Score = 31.6 bits (70), Expect = 0.74
Identities = 31/124 (25%), Positives = 43/124 (34%), Gaps = 9/124 (7%)
Query: 19 RRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSP---TPSAQFPRNDGDPQAL 75
+R + AGD PPG P PG + P S+ P T Q P G
Sbjct: 25 QRGYEWDAGDVGAAPPGAAPAPGIFSSQPGHTPHPAASRDPVARTSPLQTPAAPGAAAGP 84
Query: 76 WIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQ-GDTFHRGSDKMPGRVVTLLED--HEG 132
+ +V + F R Y R F + H GR T++E+ +G
Sbjct: 85 ALSPVPPVV---HLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDG 141
Query: 133 CTWG 136
WG
Sbjct: 142 VNWG 145
>gi|46909600 a disintegrin and metalloproteinase domain 15 isoform 6
preproprotein [Homo sapiens]
Length = 863
Score = 31.6 bits (70), Expect = 0.74
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 9 PSGARPGVCVRRSFRAHAGDQPRRPPGPIPV-PGTMKQESAAPNTPPTSQSPTPS 62
PS P V + +A D+P P P+P P +S P PP + P P+
Sbjct: 770 PSRPLPPDPVSKRLQAELADRPNPPTRPLPADPVVRSPKSQGPAKPPPPRKPLPA 824
>gi|46909598 a disintegrin and metalloproteinase domain 15 isoform 5
preproprotein [Homo sapiens]
Length = 862
Score = 31.6 bits (70), Expect = 0.74
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 9 PSGARPGVCVRRSFRAHAGDQPRRPPGPIPV-PGTMKQESAAPNTPPTSQSPTPS 62
PS P V + +A D+P P P+P P +S P PP + P P+
Sbjct: 769 PSRPLPPDPVSKRLQAELADRPNPPTRPLPADPVVRSPKSQGPAKPPPPRKPLPA 823
>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
Length = 1384
Score = 31.6 bits (70), Expect = 0.74
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 24 AHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTS---QSPTPS-AQFPRNDGDPQAL 75
AH +PP P P + +AAPN P S +PTP+ A PR+ PQ L
Sbjct: 1323 AHEYHPGSKPPLPTSGPAQVPTPTAAPNQAPASAPAPAPTPAPAPGPRDQNLPQIL 1378
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 31.2 bits (69), Expect = 0.97
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 34 PGPIPVPGTMKQESAAPNTPP--TSQSPTPSAQFPRNDGDP 72
P P P+P K+ ++ P+TP TS SPT S Q P +D P
Sbjct: 1086 PSPTPLPTLPKELTSDPSTPSEVTSLSPT-SEQVPESDTTP 1125
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 31.2 bits (69), Expect = 0.97
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 30 PRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPSAQFPRNDG 70
P PP +P P +AAP+T + TP A P DG
Sbjct: 289 PHLPPLGLPAPAASAATAAAPSTVSSGPPATPVAPAPSADG 329
>gi|239749704 PREDICTED: hypothetical protein XP_002347124 [Homo
sapiens]
Length = 80
Score = 31.2 bits (69), Expect = 0.97
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 11 GARPGVCVRRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPSAQFPRN 68
G RP R+ R H R P P+P T + AP P ++ TP PRN
Sbjct: 28 GERPPPASARTLRTHL-----RLPAGAPLPSTPPVSNPAPPPRPIPRAATPLTPRPRN 80
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 31.2 bits (69), Expect = 0.97
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 30 PRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPSAQFPRNDG 70
P PP +P P +AAP+T + TP A P DG
Sbjct: 289 PHLPPLGLPAPAASAATAAAPSTVSSGPPATPVAPAPSADG 329
>gi|89886484 XK, Kell blood group complex subunit-related family,
member 6 isoform b [Homo sapiens]
Length = 641
Score = 31.2 bits (69), Expect = 0.97
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 19 RRSFRAHAGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPTPSAQFPRNDGDPQALWI 77
RRS A GDQP +PP PG +Q P TP ++ P Q R D LWI
Sbjct: 83 RRSAAADGGDQPLQPPA---APGAGRQ----PPTPSAARPEPPPPQVERPWLD--CLWI 132
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 31.2 bits (69), Expect = 0.97
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 30 PRRPPGPIPVPGTMKQESAAPNT-PPTSQSPTPSAQ 64
P PPGP+P G+M P+ P S P PSA+
Sbjct: 664 PFHPPGPMPSVGSMPSAGPMPSAGPMPSAGPVPSAR 699
Score = 30.0 bits (66), Expect = 2.2
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 33 PPGPIPVPGTMKQESAAPNTPPTSQSPTPSAQFP 66
PP P P P AP PPT+ P P+ + P
Sbjct: 796 PPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEP 829
>gi|41350201 epsin 1 isoform c [Homo sapiens]
Length = 550
Score = 31.2 bits (69), Expect = 0.97
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 26 AGDQPRRPPGPIPVPGTMKQESAAPNTPPTSQSPT---PSAQFPRNDGDPQALWIFGYGS 82
AG+ P R PG + G + A +PP + +PT P+ + P + P A + S
Sbjct: 402 AGEVPARSPGAFDMSGVRGSLAEAVGSPPPAATPTPTPPTRKTPESFLGPNAA-LVDLDS 460
Query: 83 LVWRP 87
LV RP
Sbjct: 461 LVSRP 465
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,904,072
Number of Sequences: 37866
Number of extensions: 731643
Number of successful extensions: 5894
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 135
Number of HSP's that attempted gapping in prelim test: 5324
Number of HSP's gapped (non-prelim): 685
length of query: 264
length of database: 18,247,518
effective HSP length: 100
effective length of query: 164
effective length of database: 14,460,918
effective search space: 2371590552
effective search space used: 2371590552
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.