Guide to the Human Genome
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Name: WDR47 Sequence: fasta or formatted (919aa) NCBI GI: 216548382
Description:

WD repeat domain 47 isoform 3

Referenced in:

WD Repeat Proteins

Other entries for this name:
alt prot [920aa] WD repeat domain 47 isoform 2
alt prot [927aa] WD repeat domain 47 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         53           2
 C cysteine            2.9         27           2
 D aspartate           5.8         53           2
 E glutamate           6.5         60           2
 F phenylalanine       3.5         32           1
 G glycine             7.0         64           2
 H histidine           3.2         29           2
 I isoleucine          4.2         39           2
 K lysine              5.2         48           2
 L leucine            10.4         96           3
 M methionine          2.4         22           1
 N asparagine          4.4         40           2
 P proline             5.0         46           2
 Q glutamine           5.8         53           3
 R arginine            4.2         39           2
 S serine              9.6         88           3
 T threonine           5.2         48           2
 V valine              5.3         49           2
 W tryptophan          1.0          9           1
 Y tyrosine            2.6         24           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 47 isoform 3 
WDR47                 0.997   WD repeat domain 47 isoform 2 
WDR47                 0.994   WD repeat domain 47 isoform 1 
WDR51A                0.046   WD repeat domain 51A isoform 3 
WDR51A                0.046   WD repeat domain 51A isoform 2 
WDR51A                0.046   WD repeat domain 51A isoform 1 
WDR51B                0.041   WD repeat domain 51B 
WDR69                 0.041   WD repeat domain 69 
WDR38                 0.038   WD repeat domain 38 
GNB5                  0.038   guanine nucleotide-binding protein, beta-5 subunit is...
GNB5                  0.038   guanine nucleotide-binding protein, beta-5 subunit i...
KATNB1                0.036   katanin p80 subunit B 1 
SNRNP40               0.036   WD repeat domain 57 (U5 snRNP specific) 
ATG16L1               0.033   APG16 autophagy 16-like isoform 1 
TAF5                  0.032   TBP-associated factor 5 
WDR5B                 0.032   WD repeat domain 5B 
WDR5                  0.031   WD repeat domain 5 
WDR5                  0.031   WD repeat domain 5 
GNB4                  0.031   guanine nucleotide-binding protein, beta-4 subunit [...
ATG16L1               0.030   APG16 autophagy 16-like isoform 2 
GNB1                  0.030   guanine nucleotide-binding protein, beta-1 subunit [...
GNB2                  0.029   guanine nucleotide-binding protein, beta-2 subunit [...
WDR61                 0.028   WD repeat domain 61 
GNB3                  0.028   guanine nucleotide-binding protein, beta-3 subunit [H...
FBXW11                0.027   F-box and WD repeat domain containing 11 isoform C [...
FBXW11                0.027   F-box and WD repeat domain containing 11 isoform A [...
FBXW11                0.027   F-box and WD repeat domain containing 11 isoform B [...
PAFAH1B1              0.025   platelet-activating factor acetylhydrolase, isoform I...
PLRG1                 0.024   pleiotropic regulator 1 (PRL1 homolog, Arabidopsis) [...
PRPF4                 0.024   PRP4 pre-mRNA processing factor 4 homolog 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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