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Search of human proteins with 214832219
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens] 342 1e-94
gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens] 342 1e-94
gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens] 342 1e-94
gi|4505005 LIM domain only 1 [Homo sapiens] 170 5e-43
gi|21361802 LIM domain only 3 [Homo sapiens] 167 3e-42
gi|47778935 LIM domain only 3 [Homo sapiens] 167 3e-42
gi|5803072 LIM domain only 4 [Homo sapiens] 132 9e-32
gi|15375314 LIM homeobox protein 4 [Homo sapiens] 98 3e-21
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens] 97 7e-21
gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens] 97 7e-21
gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens] 97 7e-21
gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens] 97 7e-21
gi|30795196 LIM homeobox protein 2 [Homo sapiens] 96 1e-20
gi|30410785 LIM homeobox protein 1 [Homo sapiens] 92 1e-19
gi|21956641 ISL LIM homeobox 2 [Homo sapiens] 92 1e-19
gi|50083287 LIM homeobox 8 [Homo sapiens] 90 7e-19
gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens] 89 1e-18
gi|115387114 islet-1 [Homo sapiens] 89 1e-18
gi|11641283 LIM homeobox protein 5 [Homo sapiens] 87 6e-18
gi|28893581 LIM homeobox transcription factor 1, alpha isoform a... 86 1e-17
gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens] 80 6e-16
gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens] 80 6e-16
gi|194272207 actin binding LIM protein family, member 2 isoform ... 75 3e-14
gi|153792514 actin binding LIM protein family, member 2 isoform ... 75 3e-14
gi|194272204 actin binding LIM protein family, member 2 isoform ... 75 3e-14
gi|194272202 actin binding LIM protein family, member 2 isoform ... 75 3e-14
gi|194272200 actin binding LIM protein family, member 2 isoform ... 75 3e-14
gi|194272198 actin binding LIM protein family, member 2 isoform ... 75 3e-14
gi|194272196 actin binding LIM protein family, member 2 isoform ... 75 3e-14
gi|4505001 LIM domain kinase 1 [Homo sapiens] 70 6e-13
>gi|214832219 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 342 bits (876), Expect = 1e-94
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
Sbjct: 1 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
Query: 121 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 158
KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
Sbjct: 121 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 158
>gi|214832121 LIM domain only 2 isoform 2 [Homo sapiens]
Length = 158
Score = 342 bits (876), Expect = 1e-94
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
Sbjct: 1 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
Query: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
Sbjct: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
Query: 121 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 158
KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
Sbjct: 121 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 158
>gi|214832074 LIM domain only 2 isoform 1 [Homo sapiens]
Length = 227
Score = 342 bits (876), Expect = 1e-94
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC
Sbjct: 70 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 129
Query: 61 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 120
GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF
Sbjct: 130 GCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECF 189
Query: 121 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 158
KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI
Sbjct: 190 KCAACQKHFCVGDRYLLINSDIVCEQDIYEWTKINGMI 227
>gi|4505005 LIM domain only 1 [Homo sapiens]
Length = 156
Score = 170 bits (430), Expect = 5e-43
Identities = 75/127 (59%), Positives = 90/127 (70%), Gaps = 1/127 (0%)
Query: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
C GC + I DRY LKA+D+YWHEDCL C C CRLGEVG LY K LCRRDYLRLFG
Sbjct: 24 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 83
Query: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 149
G CA+C K I A+EM MR +D VYHL+CF C C + FCVGD++ L N+ I+C+ D Y
Sbjct: 84 TTGNCAACSKLIPAFEMVMRARDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQMD-Y 142
Query: 150 EWTKING 156
E ++NG
Sbjct: 143 EEGQLNG 149
>gi|21361802 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 167 bits (423), Expect = 3e-42
Identities = 73/121 (60%), Positives = 85/121 (70%)
Query: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
C GC + I DRY LKA+D+YWHEDCL C C CRLGEVG LY K LCRRDYLRLFG
Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 72
Query: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 149
G CA+C K I A+EM MR KD VYHL+CF C C + FCVGD++ L N+ I+C+ D
Sbjct: 73 VTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 132
Query: 150 E 150
E
Sbjct: 133 E 133
>gi|47778935 LIM domain only 3 [Homo sapiens]
Length = 145
Score = 167 bits (423), Expect = 3e-42
Identities = 73/121 (60%), Positives = 85/121 (70%)
Query: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
C GC + I DRY LKA+D+YWHEDCL C C CRLGEVG LY K LCRRDYLRLFG
Sbjct: 13 CAGCNRKIKDRYLLKALDKYWHEDCLKCACCDCRLGEVGSTLYTKANLILCRRDYLRLFG 72
Query: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 149
G CA+C K I A+EM MR KD VYHL+CF C C + FCVGD++ L N+ I+C+ D
Sbjct: 73 VTGNCAACSKLIPAFEMVMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYE 132
Query: 150 E 150
E
Sbjct: 133 E 133
>gi|5803072 LIM domain only 4 [Homo sapiens]
Length = 165
Score = 132 bits (333), Expect = 9e-32
Identities = 55/118 (46%), Positives = 71/118 (60%)
Query: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
C GC I DR+ L A+D YWH CL C C +LG++G Y K G LCR DY+RLFG
Sbjct: 23 CAGCGGKIADRFLLYAMDSYWHSRCLKCSCCQAQLGDIGTSCYTKSGMILCRNDYIRLFG 82
Query: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
G C++C + I A E+ MR + VYHL+CF C+ C+ GDR+ IN + CE D
Sbjct: 83 NSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFCEHD 140
>gi|15375314 LIM homeobox protein 4 [Homo sapiens]
Length = 390
Score = 97.8 bits (242), Expect = 3e-21
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 8/139 (5%)
Query: 19 EVLQIPPSLLT-CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGR 77
E+L +P + C GC Q+I D++ LK +D++WH CL C C +L + R + + G
Sbjct: 18 EMLGVPMQQIPQCAGCNQHILDKFILKVLDRHWHSSCLKCADCQMQLAD---RCFSRAGS 74
Query: 78 KLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YL 136
C+ D+ + FG C +C + I ++ + +D VYHL CF C C + GD YL
Sbjct: 75 VYCKEDFFKRFGTK--CTACQQGIPPTQVVRKAQDFVYHLHCFACIICNRQLATGDEFYL 132
Query: 137 LINSDIVCEQDIYEWTKIN 155
+ + +VC++D YE K N
Sbjct: 133 MEDGRLVCKED-YETAKQN 150
>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
Length = 397
Score = 96.7 bits (239), Expect = 7e-21
Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
C GC Q+I DR+ LKA+D++WH CL C C L E R + + C+ D+ + FG
Sbjct: 31 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 87
Query: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCEQDI 148
CA+C I ++ R +D VYHL CF C C++ GD YL+ +S +VC+ D
Sbjct: 88 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKAD- 144
Query: 149 YEWTK 153
YE K
Sbjct: 145 YETAK 149
>gi|7657303 LIM homeobox protein 3 isoform b [Homo sapiens]
Length = 402
Score = 96.7 bits (239), Expect = 7e-21
Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
C GC Q+I DR+ LKA+D++WH CL C C L E R + + C+ D+ + FG
Sbjct: 36 CAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAE---RCFSRGESVYCKDDFFKRFG 92
Query: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCEQDI 148
CA+C I ++ R +D VYHL CF C C++ GD YL+ +S +VC+ D
Sbjct: 93 TK--CAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVCKAD- 149
Query: 149 YEWTK 153
YE K
Sbjct: 150 YETAK 154
>gi|33569216 LIM homeobox 9 isoform 1 [Homo sapiens]
Length = 397
Score = 96.7 bits (239), Expect = 7e-21
Identities = 50/122 (40%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 24 PPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLG-EVGRRLYYKLGRKLCRR 82
P C GC I DRY+L A+D+ WH CL C C C+L E + K G C+
Sbjct: 65 PEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKE 122
Query: 83 DYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 142
DY R F CA C I A EM MR +D VYHL CF C+ C K GD + + +S +
Sbjct: 123 DYYRRFSVQR-CARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLV 181
Query: 143 VC 144
C
Sbjct: 182 YC 183
>gi|62241033 LIM homeobox 9 isoform 2 [Homo sapiens]
Length = 388
Score = 96.7 bits (239), Expect = 7e-21
Identities = 50/122 (40%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 24 PPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLG-EVGRRLYYKLGRKLCRR 82
P C GC I DRY+L A+D+ WH CL C C C+L E + K G C+
Sbjct: 56 PEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKC--CECKLALESELTCFAKDGSIYCKE 113
Query: 83 DYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 142
DY R F CA C I A EM MR +D VYHL CF C+ C K GD + + +S +
Sbjct: 114 DYYRRFSVQR-CARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLV 172
Query: 143 VC 144
C
Sbjct: 173 YC 174
>gi|30795196 LIM homeobox protein 2 [Homo sapiens]
Length = 406
Score = 95.9 bits (237), Expect = 1e-20
Identities = 54/145 (37%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 1 MSSAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLC 60
+SSAI+R + + + C GC I DRY+L A+D+ WH CL C C
Sbjct: 29 ISSAIDRGDTETTMPSISS-----DRAALCAGCGGKISDRYYLLAVDKQWHMRCLKC--C 81
Query: 61 GCRLG-EVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLEC 119
C+L E + K G C+ DY R F CA C I A EM MR +D VYHL C
Sbjct: 82 ECKLNLESELTCFSKDGSIYCKEDYYRRFSVQR-CARCHLGISASEMVMRARDLVYHLNC 140
Query: 120 FKCAACQKHFCVGDRYLLINSDIVC 144
F C C K GD + + +S + C
Sbjct: 141 FTCTTCNKMLTTGDHFGMKDSLVYC 165
>gi|30410785 LIM homeobox protein 1 [Homo sapiens]
Length = 406
Score = 92.4 bits (228), Expect = 1e-19
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
++ C GC++ I DR+ L +D+ WH C+ C C C L E + + + G+ C+ D+ R
Sbjct: 1 MVHCAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTE---KCFSREGKLYCKNDFFR 57
Query: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCE 145
FG CA C + I ++ R + KV+HL CF C C K G+ Y++ + VC+
Sbjct: 58 CFGTK--CAGCAQGISPSDLVRRARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCK 115
Query: 146 QD 147
+D
Sbjct: 116 ED 117
>gi|21956641 ISL LIM homeobox 2 [Homo sapiens]
Length = 359
Score = 92.4 bits (228), Expect = 1e-19
Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 25 PSLLTCGGCQQNIGDRYFLKAI-DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 83
P C GC I D++ L+ D WH CL C C L E + + G+ C+RD
Sbjct: 22 PGTAMCVGCGSQIHDQFILRVSPDLEWHAACLKCAECSQYLDETCT-CFVRDGKTYCKRD 80
Query: 84 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIV 143
Y+RLFG CA C + ++ MR +D VYH+ECF+C+ C + GD + L +++
Sbjct: 81 YVRLFGIK--CAKCQVGFSSSDLVMRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELL 138
Query: 144 CEQD 147
C D
Sbjct: 139 CRAD 142
>gi|50083287 LIM homeobox 8 [Homo sapiens]
Length = 356
Score = 90.1 bits (222), Expect = 7e-19
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 24 PPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRD 83
PP C C I D+Y LK D WH CLSC +C LG Y K C+ D
Sbjct: 69 PPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGR-HTSCYIKDKDIFCKLD 127
Query: 84 YLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIV 143
Y R +G C+ C + I + + R K VYHL CF C +C++ G+ + L+ ++
Sbjct: 128 YFRRYGTR--CSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALVEEKVL 185
Query: 144 C 144
C
Sbjct: 186 C 186
>gi|4505007 LIM homeobox transcription factor 1, beta [Homo sapiens]
Length = 372
Score = 89.4 bits (220), Expect = 1e-18
Identities = 44/129 (34%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 25 PSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDY 84
P C GCQ+ I DR+ ++ + WHE+CL C C L Y++ + C++DY
Sbjct: 28 PHPAVCEGCQRPISDRFLMRVNESSWHEECLQCAACQQALTT---SCYFRDRKLYCKQDY 84
Query: 85 LRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVC 144
+LF C+ C ++I E MR + VYHL CF C C++ GD ++L ++C
Sbjct: 85 QQLFAAK--CSGCMEKIAPTEFVMRALECVYHLGCFCCCVCERQLRKGDEFVLKEGQLLC 142
Query: 145 EQDIYEWTK 153
+ D YE K
Sbjct: 143 KGD-YEKEK 150
>gi|115387114 islet-1 [Homo sapiens]
Length = 349
Score = 89.4 bits (220), Expect = 1e-18
Identities = 44/119 (36%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 30 CGGCQQNIGDRYFLKAI-DQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLF 88
C GC I D+Y L+ D WH CL C C L E + + G+ C+RDY+RL+
Sbjct: 17 CVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDE-SCTCFVRDGKTYCKRDYIRLY 75
Query: 89 GQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
G CA C + MR + KVYH+ECF+C AC + GD + L + C D
Sbjct: 76 GIK--CAKCSIGFSKNDFVMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRAD 132
Score = 29.3 bits (64), Expect = 1.5
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 93 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
LC C +I + D +H C KCA C ++ + + C++D
Sbjct: 16 LCVGCGNQIHDQYILRVSPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRD 70
>gi|11641283 LIM homeobox protein 5 [Homo sapiens]
Length = 402
Score = 87.0 bits (214), Expect = 6e-18
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 6/122 (4%)
Query: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
++ C GC++ I DR+ L +D+ WH C+ C C L E + + + G+ C+ D+ R
Sbjct: 2 MVHCAGCERPILDRFLLNVLDRAWHIKCVQCCECKTNLSE---KCFSREGKLYCKNDFFR 58
Query: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDR-YLLINSDIVCE 145
FG CA C + I ++ + + KV+HL CF C C K G+ Y++ + VC+
Sbjct: 59 RFGTK--CAGCAQGISPSDLVRKARSKVFHLNCFTCMVCNKQLSTGEELYVIDENKFVCK 116
Query: 146 QD 147
D
Sbjct: 117 DD 118
>gi|28893581 LIM homeobox transcription factor 1, alpha isoform a
[Homo sapiens]
Length = 382
Score = 86.3 bits (212), Expect = 1e-17
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 5/118 (4%)
Query: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
C GCQ+ I DR+ L+ D +WHE C+ C C L +Y+ + C+ DY +LF
Sbjct: 35 CEGCQRVILDRFLLRLNDSFWHEQCVQCASCKEPLETT---CFYRDKKLYCKYDYEKLFA 91
Query: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQD 147
C C + I E MR + VYHL CF C C++ GD ++L ++C+ D
Sbjct: 92 VK--CGGCFEAIAPNEFVMRAQKSVYHLSCFCCCVCERQLQKGDEFVLKEGQLLCKGD 147
>gi|134284361 LIM homeobox protein 6 isoform 2 [Homo sapiens]
Length = 377
Score = 80.5 bits (197), Expect = 6e-16
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
C C I DRY LK + WH CL C +C L + Y K C+ DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVC 144
CA C ++I A + R + YHL CF C +C++ G+ + L+ ++C
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLC 210
Score = 33.5 bits (75), Expect = 0.077
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 93 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 149
+C+SC I + ++V + ++H+ C +C+ C+ + + N +I C+ D +
Sbjct: 98 ICSSCGLEILDRYL-LKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYF 153
>gi|134284359 LIM homeobox protein 6 isoform 1 [Homo sapiens]
Length = 392
Score = 80.5 bits (197), Expect = 6e-16
Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 30 CGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFG 89
C C I DRY LK + WH CL C +C L + Y K C+ DY FG
Sbjct: 99 CSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNS-CYIKNKEIFCKMDYFSRFG 157
Query: 90 QDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVC 144
CA C ++I A + R + YHL CF C +C++ G+ + L+ ++C
Sbjct: 158 TK--CARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLC 210
Score = 33.5 bits (75), Expect = 0.077
Identities = 13/57 (22%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 93 LCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDIVCEQDIY 149
+C+SC I + ++V + ++H+ C +C+ C+ + + N +I C+ D +
Sbjct: 98 ICSSCGLEILDRYL-LKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIFCKMDYF 153
>gi|194272207 actin binding LIM protein family, member 2 isoform 7
[Homo sapiens]
Length = 470
Score = 74.7 bits (182), Expect = 3e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 3 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 62
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 63 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 122
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 123 AACQKHFCVGDRYLLINSDIVCEQ 146
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 2e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 142
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|153792514 actin binding LIM protein family, member 2 isoform 6
[Homo sapiens]
Length = 521
Score = 74.7 bits (182), Expect = 3e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 3 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 62
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 63 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 122
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 123 AACQKHFCVGDRYLLINSDIVCEQ 146
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 2e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 142
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|194272204 actin binding LIM protein family, member 2 isoform 5
[Homo sapiens]
Length = 531
Score = 74.7 bits (182), Expect = 3e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 3 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 62
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 63 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 122
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 123 AACQKHFCVGDRYLLINSDIVCEQ 146
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 2e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 142
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|194272202 actin binding LIM protein family, member 2 isoform 4
[Homo sapiens]
Length = 559
Score = 74.7 bits (182), Expect = 3e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 3 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 62
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 63 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 122
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 123 AACQKHFCVGDRYLLINSDIVCEQ 146
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 2e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 142
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|194272200 actin binding LIM protein family, member 2 isoform 3
[Homo sapiens]
Length = 572
Score = 74.7 bits (182), Expect = 3e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 3 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 62
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 63 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 122
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 123 AACQKHFCVGDRYLLINSDIVCEQ 146
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 2e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 142
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|194272198 actin binding LIM protein family, member 2 isoform 2
[Homo sapiens]
Length = 611
Score = 74.7 bits (182), Expect = 3e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 3 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 62
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 63 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 122
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 123 AACQKHFCVGDRYLLINSDIVCEQ 146
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 2e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 142
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|194272196 actin binding LIM protein family, member 2 isoform 1
[Homo sapiens]
Length = 645
Score = 74.7 bits (182), Expect = 3e-14
Identities = 46/144 (31%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 3 SAIERKSLDPSEEPVDEVLQIPPSLLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGC 62
SA+ + PS P+++ P + + C C N+ L+ D+Y+H C C CGC
Sbjct: 2 SAVSQPQAAPS--PLEKS---PSTAILCNTCG-NVCKGEVLRVQDKYFHIKCFVCKACGC 55
Query: 63 RLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKC 122
L E G + + G +C DY RL+G C SCD+ I ++ K YH +CF C
Sbjct: 56 DLAEGG--FFVRQGEYICTLDYQRLYGTR--CFSCDQFIEGEVVS--ALGKTYHPDCFVC 109
Query: 123 AACQKHFCVGDRYLLINSDIVCEQ 146
A C+ F GDR + +C++
Sbjct: 110 AVCRLPFPPGDRVTFNGKECMCQK 133
Score = 62.4 bits (150), Expect = 2e-10
Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 7/116 (6%)
Query: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
L +CGGC I + L A+D++WH C C CG L K G C DY
Sbjct: 150 LRSCGGCGTEIKNGQALVALDKHWHLGCFKCKSCGKLL---NAEYISKDGLPYCEADYHA 206
Query: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLINSDI 142
FG C SC+K I + +K YH C C C + F G+ L S I
Sbjct: 207 KFGI--RCDSCEKYITG--RVLEAGEKHYHPSCALCVRCGQMFAEGEEMYLQGSSI 258
>gi|4505001 LIM domain kinase 1 [Homo sapiens]
Length = 647
Score = 70.5 bits (171), Expect = 6e-13
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 27 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR 86
L C C Q I D +L+A++ WH DC C C C + + Y K G+ C++DY
Sbjct: 22 LPVCASCGQRIYDGQYLQALNADWHADCFRC--CDCS-ASLSHQYYEKDGQLFCKKDYWA 78
Query: 87 LFGQDGLCASCDKRIRAYEMTMRVKDKVYHLECFKCAACQKHFCVGDRYLLI-NSDIVCE 145
+G+ C C ++I + M + YH ECF C C GD Y L+ +S + C
Sbjct: 79 RYGES--CHGCSEQI-TKGLVMVAGELKYHPECFICLTCGTFIGDGDTYTLVEHSKLYCG 135
Query: 146 QDIYE 150
Y+
Sbjct: 136 HCYYQ 140
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.143 0.477
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,723,009
Number of Sequences: 37866
Number of extensions: 312636
Number of successful extensions: 1492
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 1023
Number of HSP's gapped (non-prelim): 339
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.