Guide to the Human Genome
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Name: ABLIM2 Sequence: fasta or formatted (645aa) NCBI GI: 194272196
Description:

actin binding LIM protein family, member 2 isoform 1

Referenced in:

LIM Domain Proteins

Other entries for this name:
alt prot [521aa] actin binding LIM protein family, member 2 isoform 6
alt prot [611aa] actin binding LIM protein family, member 2 isoform 2
alt prot [572aa] actin binding LIM protein family, member 2 isoform 3
alt prot [559aa] actin binding LIM protein family, member 2 isoform 4
alt prot [531aa] actin binding LIM protein family, member 2 isoform 5
alt prot [470aa] actin binding LIM protein family, member 2 isoform 7
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         38           2
 C cysteine            4.8         31           1
 D aspartate           6.7         43           2
 E glutamate           4.7         30           2
 F phenylalanine       3.3         21           2
 G glycine             7.8         50           2
 H histidine           3.3         21           2
 I isoleucine          3.7         24           2
 K lysine              5.7         37           3
 L leucine             7.3         47           2
 M methionine          1.4          9           1
 N asparagine          2.2         14           1
 P proline             6.5         42           3
 Q glutamine           4.0         26           2
 R arginine            7.0         45           2
 S serine             11.8         76           2
 T threonine           4.3         28           1
 V valine              4.5         29           2
 W tryptophan          0.8          5           1
 Y tyrosine            4.5         29           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   actin binding LIM protein family, member 2 isoform ... 
ABLIM2                0.911   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.831   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.685   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.607   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.605   actin binding LIM protein family, member 2 isoform ...
ABLIM2                0.605   actin binding LIM protein family, member 2 isoform ...
ABLIM1                0.477   actin-binding LIM protein 1 isoform b 
ABLIM1                0.477   actin-binding LIM protein 1 isoform a 
ABLIM1                0.466   actin-binding LIM protein 1 isoform c 
ABLIM3                0.434   actin binding LIM protein family, member 3 
ABLIM1                0.164   actin-binding LIM protein 1 isoform s 
EPB49                 0.100   erythrocyte membrane protein band 4.9 isoform 2 [Ho...
EPB49                 0.100   erythrocyte membrane protein band 4.9 isoform 2 [Ho...
EPB49                 0.097   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 0.097   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 0.097   erythrocyte membrane protein band 4.9 isoform 1 [Ho...
EPB49                 0.092   erythrocyte membrane protein band 4.9 isoform 3 [Ho...
PXN                   0.086   paxillin isoform 3 
PXN                   0.086   paxillin isoform 2 
PXN                   0.086   paxillin isoform 1 
LPXN                  0.068   leupaxin isoform 1 
LPXN                  0.068   leupaxin isoform 2 
LIMS2                 0.065   LIM and senescent cell antigen-like domains 2 isofor...
LIMS2                 0.064   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.064   LIM and senescent cell antigen-like domains 2 isofo...
LIMS2                 0.064   LIM and senescent cell antigen-like domains 2 isofo...
LIMS1                 0.063   LIM and senescent cell antigen-like domains 1 
TGFB1I1               0.063   transforming growth factor beta 1 induced transcrip...
TGFB1I1               0.063   transforming growth factor beta 1 induced transcript...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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