Guide to the Human Genome
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Name: CAND1 Sequence: fasta or formatted (1230aa) NCBI GI: 21361794
Description:

TIP120 protein

Referenced in:

Cullins and SCF Complexes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         83           3
 C cysteine            2.4         30           2
 D aspartate           6.7         82           4
 E glutamate           6.0         74           2
 F phenylalanine       2.8         35           2
 G glycine             4.0         49           2
 H histidine           2.0         25           2
 I isoleucine          6.3         77           2
 K lysine              6.3         78           2
 L leucine            13.7        168           3
 M methionine          2.5         31           1
 N asparagine          3.5         43           2
 P proline             4.6         57           2
 Q glutamine           3.8         47           2
 R arginine            4.1         51           2
 S serine              9.0        111           4
 T threonine           5.4         66           2
 V valine              7.2         89           2
 W tryptophan          0.2          3           1
 Y tyrosine            2.5         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TIP120 protein 
CAND2                 0.640   TBP-interacting protein isoform 1 
CAND2                 0.508   TBP-interacting protein isoform 2 
CLASP2                0.008   CLIP-associating protein 2 
IPO4                  0.008   importin 4 
GCN1L1                0.007   GCN1 general control of amino-acid synthesis 1-like ...
TSPYL2                0.006   TSPY-like 2 
NCL                   0.006   nucleolin 
CLASP1                0.006   CLIP-associating protein 1 isoform 3 
CLASP1                0.006   CLIP-associating protein 1 isoform 2 
CLASP1                0.006   CLIP-associating protein 1 isoform 1 
TNPO1                 0.005   transportin 1 isoform 2 
TNPO1                 0.005   transportin 1 isoform 1 
ZBTB7C                0.005   zinc finger and BTB domain containing 7C 
CCDC123               0.005   coiled-coil domain containing 123 
UBE2R2                0.005   ubiquitin-conjugating enzyme UBC3B 
VAC14                 0.005   Vac14 homolog 
PACS1                 0.005   phosphofurin acidic cluster sorting protein 1 
MTERFD2               0.005   MTERF domain containing 2 
ATR                   0.005   ataxia telangiectasia and Rad3 related protein [Hom...
LOC651921             0.005   PREDICTED: similar to ataxia telangiectasia and Rad...
UBTF                  0.005   upstream binding transcription factor, RNA polymera...
UBTF                  0.005   upstream binding transcription factor, RNA polymera...
UBTF                  0.005   upstream binding transcription factor, RNA polymerase...
ATAD2                 0.005   ATPase family, AAA domain containing 2 
TNPO2                 0.005   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.005   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.005   transportin 2 (importin 3, karyopherin beta 2b) isof...
INTS7                 0.005   integrator complex subunit 7 
ARIH1                 0.005   ariadne ubiquitin-conjugating enzyme E2 binding pro...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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