Guide to the Human Genome
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Name: TNPO1 Sequence: fasta or formatted (898aa) NCBI GI: 133925811
Description:

transportin 1 isoform 1

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt prot [890aa] transportin 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         54           3
 C cysteine            2.9         26           1
 D aspartate           7.2         65           5
 E glutamate           6.9         62           3
 F phenylalanine       3.9         35           2
 G glycine             3.8         34           2
 H histidine           2.2         20           2
 I isoleucine          7.3         66           2
 K lysine              5.0         45           2
 L leucine            12.8        115           2
 M methionine          3.0         27           1
 N asparagine          4.7         42           2
 P proline             5.6         50           2
 Q glutamine           5.7         51           2
 R arginine            4.0         36           2
 S serine              5.2         47           2
 T threonine           4.1         37           2
 V valine              5.7         51           2
 W tryptophan          1.4         13           1
 Y tyrosine            2.4         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transportin 1 isoform 1 
TNPO1                 0.990   transportin 1 isoform 2 
TNPO2                 0.858   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.858   transportin 2 (importin 3, karyopherin beta 2b) isof...
TNPO2                 0.853   transportin 2 (importin 3, karyopherin beta 2b) iso...
KPNB1                 0.052   karyopherin beta 1 
IPO5                  0.029   importin 5 
RANBP6                0.024   RAN binding protein 6 
IPO4                  0.023   importin 4 
CSE1L                 0.016   CSE1 chromosome segregation 1-like protein 
IPO11                 0.012   Ran binding protein 11 isoform 1 
IPO11                 0.012   Ran binding protein 11 isoform 2 
IPO9                  0.009   importin 9 
KIAA0368              0.009   KIAA0368 protein 
HRC                   0.008   histidine rich calcium binding protein precursor [Hom...
ATAD2                 0.008   ATPase family, AAA domain containing 2 
NRD1                  0.008   nardilysin isoform b 
CAND1                 0.007   TIP120 protein 
KPNA6                 0.007   karyopherin alpha 6 
NCL                   0.007   nucleolin 
UBTF                  0.007   upstream binding transcription factor, RNA polymera...
UBTF                  0.007   upstream binding transcription factor, RNA polymera...
UBTF                  0.007   upstream binding transcription factor, RNA polymerase...
KPNA5                 0.007   karyopherin alpha 5 
KPNA4                 0.007   karyopherin alpha 4 
XPO1                  0.006   exportin 1 
LOC645490             0.006   PREDICTED: similar to hCG1991922 
NRD1                  0.006   nardilysin isoform a 
PPP2R1A               0.006   alpha isoform of regulatory subunit A, protein phosp...
CAND2                 0.006   TBP-interacting protein isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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