Guide to the Human Genome
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Name: PACS1 Sequence: fasta or formatted (963aa) NCBI GI: 30089916
Description:

phosphofurin acidic cluster sorting protein 1

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         55           4
 C cysteine            0.7          7           1
 D aspartate           5.4         52           2
 E glutamate           6.0         58           5
 F phenylalanine       2.6         25           2
 G glycine             6.6         64           3
 H histidine           1.6         15           1
 I isoleucine          3.7         36           2
 K lysine              6.7         65           2
 L leucine             8.8         85           2
 M methionine          2.3         22           1
 N asparagine          2.5         24           1
 P proline             6.9         66           3
 Q glutamine           5.8         56           6
 R arginine            4.8         46           3
 S serine             13.5        130           6
 T threonine           5.7         55           2
 V valine              7.7         74           2
 W tryptophan          0.8          8           1
 Y tyrosine            2.1         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphofurin acidic cluster sorting protein 1 
PACS2                 0.514   phosphofurin acidic cluster sorting protein 2 isofo...
PACS2                 0.512   phosphofurin acidic cluster sorting protein 2 isofo...
LOC100133142          0.017   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.017   PREDICTED: similar to zinc finger protein 208 [Homo...
SFPQ                  0.016   splicing factor proline/glutamine rich (polypyrimidin...
DACH1                 0.014   dachshund homolog 1 isoform b 
DACH1                 0.014   dachshund homolog 1 isoform a 
DACH1                 0.014   dachshund homolog 1 isoform c 
C6orf174              0.014   hypothetical protein LOC387104 
SRRM2                 0.014   splicing coactivator subunit SRm300 
TRIO                  0.014   triple functional domain (PTPRF interacting) 
MEX3D                 0.014   ring finger and KH domain containing 1 
PRDM6                 0.013   PR domain containing 6 
HOXA4                 0.012   homeobox A4 
MLL                   0.012   myeloid/lymphoid or mixed-lineage leukemia protein [...
HOXD9                 0.012   homeobox D9 
MAP6                  0.012   microtubule-associated protein 6 isoform 2 
MAP6                  0.012   microtubule-associated protein 6 isoform 1 
HOXA10                0.011   homeobox A10 isoform a 
ZBTB4                 0.011   zinc finger and BTB domain containing 4 
ZBTB4                 0.011   zinc finger and BTB domain containing 4 
ATXN2                 0.011   ataxin 2 
WTIP                  0.011   Wilms tumor 1 interacting protein 
RANBP9                0.011   RAN binding protein 9 
BEND4                 0.011   BEN domain containing 4 isoform b 
BEND4                 0.011   BEN domain containing 4 isoform a 
HNRNPUL1              0.011   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
HNRNPUL1              0.011   heterogeneous nuclear ribonucleoprotein U-like 1 iso...
SYN1                  0.010   synapsin I isoform Ia 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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