Guide to the Human Genome
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Name: TNPO2 Sequence: fasta or formatted (887aa) NCBI GI: 48675813
Description:

transportin 2 (importin 3, karyopherin beta 2b) isoform 2

Referenced in:

Nucleus and Nucleolus
Small RNAs in RNA Processing

Other entries for this name:
alt mRNA [887aa] transportin 2 (importin 3, karyopherin beta 2b) isoform 3
alt prot [897aa] transportin 2 (importin 3, karyopherin beta 2b) isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         62           3
 C cysteine            3.0         27           1
 D aspartate           6.7         59           6
 E glutamate           6.9         61           3
 F phenylalanine       4.2         37           2
 G glycine             4.2         37           2
 H histidine           2.5         22           2
 I isoleucine          6.5         58           2
 K lysine              4.7         42           2
 L leucine            13.1        116           2
 M methionine          3.3         29           2
 N asparagine          4.3         38           2
 P proline             5.9         52           3
 Q glutamine           6.0         53           2
 R arginine            3.6         32           1
 S serine              5.1         45           2
 T threonine           3.6         32           2
 V valine              6.0         53           2
 W tryptophan          1.4         12           1
 Y tyrosine            2.3         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transportin 2 (importin 3, karyopherin beta 2b) isof... 
TNPO2                 1.000   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.995   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO1                 0.868   transportin 1 isoform 2 
TNPO1                 0.868   transportin 1 isoform 1 
KPNB1                 0.054   karyopherin beta 1 
IPO5                  0.024   importin 5 
IPO4                  0.023   importin 4 
RANBP6                0.023   RAN binding protein 6 
IPO11                 0.012   Ran binding protein 11 isoform 1 
IPO11                 0.012   Ran binding protein 11 isoform 2 
IPO9                  0.012   importin 9 
CSE1L                 0.010   CSE1 chromosome segregation 1-like protein 
KIAA0368              0.008   KIAA0368 protein 
XPO1                  0.007   exportin 1 
KPNA4                 0.007   karyopherin alpha 4 
NCL                   0.007   nucleolin 
KPNA6                 0.007   karyopherin alpha 6 
HNF1B                 0.006   transcription factor 2 
GCN1L1                0.006   GCN1 general control of amino-acid synthesis 1-like ...
CAND1                 0.006   TIP120 protein 
PPP2R1B               0.006   beta isoform of regulatory subunit A, protein phosph...
PPP2R1B               0.006   beta isoform of regulatory subunit A, protein phosph...
BTAF1                 0.006   BTAF1 RNA polymerase II, B-TFIID transcription facto...
C10orf76              0.006   hypothetical protein LOC79591 
CAND2                 0.005   TBP-interacting protein isoform 1 
CAND2                 0.005   TBP-interacting protein isoform 2 
STRN4                 0.005   zinedin isoform 2 
STRN4                 0.005   zinedin isoform 1 
SF3B1                 0.005   splicing factor 3b, subunit 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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