Guide to the Human Genome
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Name: GCN1L1 Sequence: fasta or formatted (2671aa) NCBI GI: 54607053
Description:

GCN1 general control of amino-acid synthesis 1-like 1

Referenced in:

Translation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5        253           3
 C cysteine            1.6         42           1
 D aspartate           4.8        127           2
 E glutamate           6.3        169           5
 F phenylalanine       2.5         67           2
 G glycine             5.5        146           3
 H histidine           2.0         54           2
 I isoleucine          4.8        129           3
 K lysine              6.0        161           4
 L leucine            15.0        401           4
 M methionine          2.6         69           2
 N asparagine          2.3         62           1
 P proline             4.8        128           3
 Q glutamine           4.8        129           2
 R arginine            5.0        133           3
 S serine              7.6        204           3
 T threonine           4.8        129           2
 V valine              7.7        206           3
 W tryptophan          0.9         23           2
 Y tyrosine            1.5         39           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GCN1 general control of amino-acid synthesis 1-like ... 
KIAA0368              0.007   KIAA0368 protein 
PPP2R1A               0.006   alpha isoform of regulatory subunit A, protein phosp...
PPP2R1B               0.005   beta isoform of regulatory subunit A, protein phosph...
PPP2R1B               0.005   beta isoform of regulatory subunit A, protein phosph...
HEATR2                0.005   HEAT repeat containing 2 
IPO4                  0.004   importin 4 
CAND2                 0.003   TBP-interacting protein isoform 1 
CAND1                 0.003   TIP120 protein 
CAND2                 0.003   TBP-interacting protein isoform 2 
BTAF1                 0.003   BTAF1 RNA polymerase II, B-TFIID transcription facto...
JUP                   0.003   junction plakoglobin 
JUP                   0.003   junction plakoglobin 
MTOR                  0.003   FK506 binding protein 12-rapamycin associated protein...
TCHH                  0.003   trichohyalin 
CLASP2                0.003   CLIP-associating protein 2 
MYH7B                 0.003   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
CNTLN                 0.003   centlein isoform 1 
CNTLN                 0.003   centlein isoform 2 
AHNAK2                0.002   AHNAK nucleoprotein 2 
SEPT7                 0.002   cell division cycle 10 isoform 1 
SEPT7                 0.002   cell division cycle 10 isoform 2 
SF3B1                 0.002   splicing factor 3b, subunit 1 isoform 1 
CTTNBP2NL             0.002   CTTNBP2 N-terminal like 
KPNA4                 0.002   karyopherin alpha 4 
AKAP9                 0.002   A-kinase anchor protein 9 isoform 2 
AKAP9                 0.002   A-kinase anchor protein 9 isoform 3 
TNPO2                 0.002   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.002   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.002   transportin 2 (importin 3, karyopherin beta 2b) isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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