Guide to the Human Genome
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Name: IPO4 Sequence: fasta or formatted (1081aa) NCBI GI: 62460637
Description:

importin 4

Referenced in:

Nucleus and Nucleolus
Ran and Rag

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8        117           4
 C cysteine            2.5         27           2
 D aspartate           4.2         45           3
 E glutamate           9.6        104           6
 F phenylalanine       3.2         35           2
 G glycine             4.8         52           2
 H histidine           2.4         26           2
 I isoleucine          3.1         33           1
 K lysine              3.1         33           1
 L leucine            17.4        188           5
 M methionine          2.2         24           1
 N asparagine          1.7         18           1
 P proline             6.7         72           3
 Q glutamine           4.9         53           1
 R arginine            5.4         58           3
 S serine              6.0         65           3
 T threonine           4.3         46           2
 V valine              6.1         66           3
 W tryptophan          0.3          3           1
 Y tyrosine            1.5         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   importin 4 
IPO5                  0.068   importin 5 
RANBP6                0.060   RAN binding protein 6 
CAND2                 0.023   TBP-interacting protein isoform 1 
CAND2                 0.021   TBP-interacting protein isoform 2 
TNPO1                 0.020   transportin 1 isoform 2 
TNPO1                 0.020   transportin 1 isoform 1 
TNPO2                 0.020   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.020   transportin 2 (importin 3, karyopherin beta 2b) iso...
TNPO2                 0.020   transportin 2 (importin 3, karyopherin beta 2b) isof...
GCN1L1                0.011   GCN1 general control of amino-acid synthesis 1-like ...
MTOR                  0.010   FK506 binding protein 12-rapamycin associated protein...
CAND1                 0.009   TIP120 protein 
TMCO7                 0.009   transmembrane and coiled-coil domains 7 
KIAA0368              0.007   KIAA0368 protein 
KPNB1                 0.007   karyopherin beta 1 
IPO13                 0.006   importin 13 
CLASP2                0.006   CLIP-associating protein 2 
UBTF                  0.006   upstream binding transcription factor, RNA polymera...
UBTF                  0.006   upstream binding transcription factor, RNA polymera...
UBTF                  0.006   upstream binding transcription factor, RNA polymerase...
CCDC34                0.006   coiled-coil domain containing 34 isoform 1 
CCDC34                0.006   coiled-coil domain containing 34 isoform 2 
PPM1G                 0.006   protein phosphatase 1G 
PPM1G                 0.006   protein phosphatase 1G 
RYR1                  0.005   skeletal muscle ryanodine receptor isoform 2 
RYR1                  0.005   skeletal muscle ryanodine receptor isoform 1 
ANP32A                0.005   acidic (leucine-rich) nuclear phosphoprotein 32 famil...
IPO9                  0.005   importin 9 
CASZ1                 0.005   castor homolog 1, zinc finger isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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