BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|113430811 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 [Homo sapiens] (255 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|113430811 PREDICTED: similar to major histocompatibility comp... 518 e-147 gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sa... 516 e-147 gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens] 513 e-146 gi|169217612 PREDICTED: similar to major histocompatibility comp... 498 e-141 gi|239740747 PREDICTED: similar to major histocompatibility comp... 498 e-141 gi|239740697 PREDICTED: similar to major histocompatibility comp... 498 e-141 gi|239740861 PREDICTED: similar to major histocompatibility comp... 480 e-136 gi|239513953 PREDICTED: similar to major histocompatibility comp... 480 e-136 gi|18426975 major histocompatibility complex, class II, DQ alpha... 468 e-132 gi|11095447 major histocompatibility complex, class II, DQ alpha... 462 e-131 gi|24797074 major histocompatibility complex, class II, DP alpha... 295 3e-80 gi|4504401 major histocompatibility complex, class II, DO alpha ... 292 2e-79 gi|169218140 PREDICTED: similar to major histocompatibility comp... 285 4e-77 gi|52426774 major histocompatibility complex, class II, DR alpha... 276 2e-74 gi|239752547 PREDICTED: similar to major histocompatibility comp... 240 1e-63 gi|18765715 major histocompatibility complex, class II, DM alpha... 101 7e-22 gi|239740859 PREDICTED: similar to major histocompatibility comp... 70 2e-12 gi|239740857 PREDICTED: similar to major histocompatibility comp... 70 2e-12 gi|239758095 PREDICTED: similar to major histocompatibility comp... 69 3e-12 gi|239740749 PREDICTED: similar to major histocompatibility comp... 69 3e-12 gi|239748785 PREDICTED: similar to HLA class II histocompatibili... 69 4e-12 gi|239740745 PREDICTED: similar to HLA class II histocompatibili... 69 4e-12 gi|239740743 PREDICTED: similar to HLA class II histocompatibili... 69 4e-12 gi|239740695 PREDICTED: similar to HLA class II histocompatibili... 69 4e-12 gi|239740693 PREDICTED: similar to HLA class II histocompatibili... 69 4e-12 gi|155030211 major histocompatibility complex, class II, DR beta... 69 5e-12 gi|239758092 PREDICTED: similar to HLA class II histocompatibili... 68 7e-12 gi|18641375 major histocompatibility complex, class II, DR beta ... 68 7e-12 gi|24797076 major histocompatibility complex, class II, DP beta ... 68 9e-12 gi|52630344 major histocompatibility complex, class II, DR beta ... 68 9e-12 >gi|113430811 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 [Homo sapiens] Length = 255 Score = 518 bits (1333), Expect = e-147 Identities = 255/255 (100%), Positives = 255/255 (100%) Query: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 Query: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240 Query: 241 RGLRSVGASRHQGPL 255 RGLRSVGASRHQGPL Sbjct: 241 RGLRSVGASRHQGPL 255 >gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sapiens] Length = 255 Score = 516 bits (1329), Expect = e-147 Identities = 254/255 (99%), Positives = 254/255 (99%) Query: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 Query: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240 PSDDEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTVLII Sbjct: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240 Query: 241 RGLRSVGASRHQGPL 255 RGLRSVGASRHQGPL Sbjct: 241 RGLRSVGASRHQGPL 255 >gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens] Length = 255 Score = 513 bits (1321), Expect = e-146 Identities = 253/255 (99%), Positives = 253/255 (99%) Query: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 Query: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240 PS DEIYDCKVEHWGLDEPLLKHWEPEIP PMSELTETVVCALGLSVGLVGIVVGTVLII Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPTPMSELTETVVCALGLSVGLVGIVVGTVLII 240 Query: 241 RGLRSVGASRHQGPL 255 RGLRSVGASRHQGPL Sbjct: 241 RGLRSVGASRHQGPL 255 >gi|169217612 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 isoform 1 [Homo sapiens] Length = 254 Score = 498 bits (1283), Expect = e-141 Identities = 247/255 (96%), Positives = 251/255 (98%), Gaps = 1/255 (0%) Query: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ++HEFDGDEEFYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60 Query: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 DLERKETVW+LPLF R R FDPQFALTNIAVLKHNLNI+IKRSNSTAATNEVPEVTVFSK Sbjct: 61 DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119 Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179 Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240 PS DEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239 Query: 241 RGLRSVGASRHQGPL 255 RGLRSVGASRHQGPL Sbjct: 240 RGLRSVGASRHQGPL 254 >gi|239740747 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 [Homo sapiens] Length = 254 Score = 498 bits (1283), Expect = e-141 Identities = 247/255 (96%), Positives = 251/255 (98%), Gaps = 1/255 (0%) Query: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ++HEFDGDEEFYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60 Query: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 DLERKETVW+LPLF R R FDPQFALTNIAVLKHNLNI+IKRSNSTAATNEVPEVTVFSK Sbjct: 61 DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119 Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179 Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240 PS DEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239 Query: 241 RGLRSVGASRHQGPL 255 RGLRSVGASRHQGPL Sbjct: 240 RGLRSVGASRHQGPL 254 >gi|239740697 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 [Homo sapiens] Length = 254 Score = 498 bits (1283), Expect = e-141 Identities = 247/255 (96%), Positives = 251/255 (98%), Gaps = 1/255 (0%) Query: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ++HEFDGDEEFYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQFTHEFDGDEEFYV 60 Query: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 DLERKETVW+LPLF R R FDPQFALTNIAVLKHNLNI+IKRSNSTAATNEVPEVTVFSK Sbjct: 61 DLERKETVWKLPLFHRLR-FDPQFALTNIAVLKHNLNILIKRSNSTAATNEVPEVTVFSK 119 Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL Sbjct: 120 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 179 Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240 PS DEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII Sbjct: 180 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 239 Query: 241 RGLRSVGASRHQGPL 255 RGLRSVGASRHQGPL Sbjct: 240 RGLRSVGASRHQGPL 254 >gi|239740861 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 [Homo sapiens] Length = 254 Score = 480 bits (1235), Expect = e-136 Identities = 238/255 (93%), Positives = 245/255 (96%), Gaps = 1/255 (0%) Query: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQY+HEFDGDE+FYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60 Query: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 DL RKETVW LP+ R+FR FDPQFALTNIAVLKHNLN +IKRSNSTAATNEVPEVTVFSK Sbjct: 61 DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119 Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 SPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT L Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179 Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240 PS +E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTV II Sbjct: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239 Query: 241 RGLRSVGASRHQGPL 255 RGLRSVGASRHQGPL Sbjct: 240 RGLRSVGASRHQGPL 254 >gi|239513953 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 [Homo sapiens] Length = 254 Score = 480 bits (1235), Expect = e-136 Identities = 238/255 (93%), Positives = 245/255 (96%), Gaps = 1/255 (0%) Query: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQY+HEFDGDE+FYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60 Query: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 DL RKETVW LP+ R+FR FDPQFALTNIAVLKHNLN +IKRSNSTAATNEVPEVTVFSK Sbjct: 61 DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119 Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 SPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLT L Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179 Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240 PS +E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTV II Sbjct: 180 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII 239 Query: 241 RGLRSVGASRHQGPL 255 RGLRSVGASRHQGPL Sbjct: 240 RGLRSVGASRHQGPL 254 >gi|18426975 major histocompatibility complex, class II, DQ alpha 1 precursor [Homo sapiens] Length = 255 Score = 468 bits (1203), Expect = e-132 Identities = 230/255 (90%), Positives = 240/255 (94%) Query: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 MILNKAL+LGALALTTVMSPCGGEDIVADHVAS GVNLYQ YGPSGQY+HEFDGDE+FYV Sbjct: 1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60 Query: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 DLERKET W+ P F +F FDPQ AL N+AV KHNLNI+IKR NSTAATNEVPEVTVFSK Sbjct: 61 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120 Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 SPVTLGQPNTLICLVDNIFPPVVNITWLSNG SVTEGVSETSFLSKSDHSFFKISYLTFL Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180 Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240 PS DEIYDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVGL+GIVVGTV II Sbjct: 181 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 240 Query: 241 RGLRSVGASRHQGPL 255 +GLRSVGASRHQGPL Sbjct: 241 QGLRSVGASRHQGPL 255 >gi|11095447 major histocompatibility complex, class II, DQ alpha 2 [Homo sapiens] Length = 255 Score = 462 bits (1190), Expect = e-131 Identities = 226/255 (88%), Positives = 239/255 (93%) Query: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 MILNKAL+LGALALT VMSPCGGEDIVADHVASYGVN YQS+GPSGQY+HEFDGDEEFYV Sbjct: 1 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60 Query: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 DLE KETVWQLP+F +F FDPQ AL N+AV KH L ++++SNSTAATNEVPEVTVFSK Sbjct: 61 DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120 Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 PVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL Sbjct: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240 PS DEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTET+VCALGLSVGL+GIVVGTV II Sbjct: 181 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 240 Query: 241 RGLRSVGASRHQGPL 255 +GLRSVGASRHQG L Sbjct: 241 QGLRSVGASRHQGLL 255 >gi|24797074 major histocompatibility complex, class II, DP alpha 1 precursor [Homo sapiens] Length = 260 Score = 295 bits (755), Expect = 3e-80 Identities = 146/251 (58%), Positives = 186/251 (74%), Gaps = 1/251 (0%) Query: 5 KALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYVDLER 64 +A++L AL+L ++S G I ADHV++Y Q++ P+G++ EFD DE FYVDL++ Sbjct: 11 RAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDEDEMFYVDLDK 69 Query: 65 KETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVT 124 KETVW L F + F+ Q L NIA+L +NLN +I+RSN T ATN+ PEVTVF K PV Sbjct: 70 KETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPEVTVFPKEPVE 129 Query: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDD 184 LGQPNTLIC +D FPPV+N+TWL NG VTEGV+E+ FL ++D+SF K YLTF+PS + Sbjct: 130 LGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTFVPSAE 189 Query: 185 EIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLIIRGLR 244 + YDC+VEHWGLD+PLLKHWE + P M E TETV+CALGL +GLVGI+VGTVLII+ LR Sbjct: 190 DFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIVGTVLIIKSLR 249 Query: 245 SVGASRHQGPL 255 S R QG L Sbjct: 250 SGHDPRAQGTL 260 >gi|4504401 major histocompatibility complex, class II, DO alpha precursor [Homo sapiens] Length = 250 Score = 292 bits (747), Expect = 2e-79 Identities = 140/242 (57%), Positives = 177/242 (73%) Query: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 M L L+LG L T++SP ADH+ SYG YQSYG SGQ++HEFD ++ F V Sbjct: 1 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 60 Query: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 DL++ E VW+LP F F RFDPQ L IA +K +L+I+++RSN + A N P VTV K Sbjct: 61 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 120 Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 S V LGQPN LIC+VDNIFPPV+NITWL NG +VTEGV++TSF S+ DH F K YL F+ Sbjct: 121 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 180 Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240 PS +++YDC+VEHWGLD PLL+HWE ++P P + ET+VCALGL++GLVG +VGTVLII Sbjct: 181 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 240 Query: 241 RG 242 G Sbjct: 241 MG 242 >gi|169218140 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1, partial [Homo sapiens] Length = 153 Score = 285 bits (728), Expect = 4e-77 Identities = 139/147 (94%), Positives = 141/147 (95%) Query: 109 TNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 168 T EVPEVTVFSKSPVTLGQPN LICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD Sbjct: 7 TTEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 66 Query: 169 HSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVG 228 HSFFKISYLT LPS +E YDCKVEHWGLD+PLLKHWEPEIPAPMSELTETVVCALGLSVG Sbjct: 67 HSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVG 126 Query: 229 LVGIVVGTVLIIRGLRSVGASRHQGPL 255 LVGIVVGTV IIRGLRSVGASRHQGPL Sbjct: 127 LVGIVVGTVFIIRGLRSVGASRHQGPL 153 >gi|52426774 major histocompatibility complex, class II, DR alpha precursor [Homo sapiens] Length = 254 Score = 276 bits (705), Expect = 2e-74 Identities = 138/255 (54%), Positives = 173/255 (67%), Gaps = 1/255 (0%) Query: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 M ++ +LG + +MS I +HV Y + SG++ +FDGDE F+V Sbjct: 1 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVIIQA-EFYLNPDQSGEFMFDFDGDEIFHV 59 Query: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 D+ +KETVW+L F RF F+ Q AL NIAV K NL I+ KRSN T TN PEVTV + Sbjct: 60 DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN 119 Query: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180 SPV L +PN LIC +D PPVVN+TWL NG VT GVSET FL + DH F K YL FL Sbjct: 120 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL 179 Query: 181 PSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVLII 240 PS +++YDC+VEHWGLDEPLLKHWE + P+P+ E TE VVCALGL+VGLVGI++GT+ II Sbjct: 180 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII 239 Query: 241 RGLRSVGASRHQGPL 255 +GLR A+ +GPL Sbjct: 240 KGLRKSNAAERRGPL 254 >gi|239752547 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1, partial [Homo sapiens] Length = 130 Score = 240 bits (612), Expect = 1e-63 Identities = 120/131 (91%), Positives = 125/131 (95%), Gaps = 1/131 (0%) Query: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQY+HEFDGDE+FYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60 Query: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120 DL RKETVW LP+ R+F RFDPQFALTNIAVLKHNLN +IKRSNSTAATNEVPEVTVFSK Sbjct: 61 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119 Query: 121 SPVTLGQPNTL 131 SPVTLGQPN L Sbjct: 120 SPVTLGQPNIL 130 >gi|18765715 major histocompatibility complex, class II, DM alpha precursor [Homo sapiens] Length = 261 Score = 101 bits (251), Expect = 7e-22 Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 19/211 (9%) Query: 40 QSYGPSGQYSHEFDGDEEFYVDLERKETVWQLPLFRRFRR---------FDPQFALTNIA 90 Q PS S +D D+ F+ D + V +LP F + + FD +F I Sbjct: 51 QDGSPSVGLSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAPAILFDKEFCEWMIQ 110 Query: 91 VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150 + L+ I S P VF+ P+ G+PNTL+C V N+FPP++ + W Sbjct: 111 QIGPKLDGKIPVSRG------FPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNW--Q 162 Query: 151 GHSV-TEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIP 209 HSV EG T + SF SYL F P +I+ C V H + +W P Sbjct: 163 HHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEIDRYTAIAYWVPRNA 222 Query: 210 APMSELTETVVCALGLSVGLVGIVVGTVLII 240 P S+L E V+C + +G++GI+VG VLII Sbjct: 223 LP-SDLLENVLCGVAFGLGVLGIIVGIVLII 252 >gi|239740859 PREDICTED: similar to major histocompatibility complex, class II, DR beta 3 isoform 1 [Homo sapiens] Length = 267 Score = 69.7 bits (169), Expect = 2e-12 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 6/161 (3%) Query: 93 KHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGH 152 +HN +V + T P+VTV+ L N L+C V +P + + W NG Sbjct: 110 RHNYGVV---ESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQ 166 Query: 153 SVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPM 212 GV T + D +F + L +P E+Y C+VEH + PL W + Sbjct: 167 EEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQ 226 Query: 213 SELTETVVCALGLSVGLVGIVVGTVLIIRGLRSVGASRHQG 253 S++ V G +GL+ + G + R + + +G Sbjct: 227 SKMLSGVG---GFVLGLLFLGAGLFIYFRNQKGHSGLQPRG 264 >gi|239740857 PREDICTED: similar to major histocompatibility complex, class II, DR beta 3 isoform 2 [Homo sapiens] Length = 266 Score = 69.7 bits (169), Expect = 2e-12 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 6/161 (3%) Query: 93 KHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGH 152 +HN +V + T P+VTV+ L N L+C V +P + + W NG Sbjct: 109 RHNYGVV---ESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQ 165 Query: 153 SVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPM 212 GV T + D +F + L +P E+Y C+VEH + PL W + Sbjct: 166 EEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQ 225 Query: 213 SELTETVVCALGLSVGLVGIVVGTVLIIRGLRSVGASRHQG 253 S++ V G +GL+ + G + R + + +G Sbjct: 226 SKMLSGVG---GFVLGLLFLGAGLFIYFRNQKGHSGLQPRG 263 >gi|239758095 PREDICTED: similar to major histocompatibility complex, class II, DR beta 5 [Homo sapiens] Length = 281 Score = 69.3 bits (168), Expect = 3e-12 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 6/148 (4%) Query: 91 VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150 V +HN + ++ +T P VT+ L N L+C V + +P + + W N Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166 Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPA 210 G T GV T + D +F + L P ++Y C VEH L P+ W + + Sbjct: 167 GQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSES 226 Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVL 238 S++ + G +GL+ + +G ++ Sbjct: 227 AQSKMLSGIG---GFVLGLIFLGLGLII 251 >gi|239740749 PREDICTED: similar to major histocompatibility complex, class II, DR beta 5 [Homo sapiens] Length = 281 Score = 69.3 bits (168), Expect = 3e-12 Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 6/148 (4%) Query: 91 VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150 V +HN + ++ +T P VT+ L N L+C V + +P + + W N Sbjct: 110 VCRHNYQLELR---TTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166 Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPA 210 G T GV T + D +F + L P ++Y C VEH L P+ W + + Sbjct: 167 GQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSES 226 Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVL 238 S++ + G +GL+ + +G ++ Sbjct: 227 AQSKMLSGIG---GFVLGLIFLGLGLII 251 >gi|239748785 PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-9 beta chain [Homo sapiens] Length = 266 Score = 68.9 bits (167), Expect = 4e-12 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 6/151 (3%) Query: 91 VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150 V +HN + + T PEVTV+ L N L+C V +P + + W N Sbjct: 107 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163 Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPA 210 G GV T + D +F + L +P E+Y C+VEH + PL W + Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 223 Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241 S++ V G +GL+ + G + R Sbjct: 224 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 251 >gi|239740745 PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain isoform 1 [Homo sapiens] Length = 266 Score = 68.9 bits (167), Expect = 4e-12 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 6/151 (3%) Query: 91 VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150 V +HN + + T PEVTV+ L N L+C V +P + + W N Sbjct: 107 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163 Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPA 210 G GV T + D +F + L +P E+Y C+VEH + PL W + Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 223 Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241 S++ V G +GL+ + G + R Sbjct: 224 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 251 >gi|239740743 PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain isoform 2 [Homo sapiens] Length = 264 Score = 68.9 bits (167), Expect = 4e-12 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 6/151 (3%) Query: 91 VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150 V +HN + + T PEVTV+ L N L+C V +P + + W N Sbjct: 105 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 161 Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPA 210 G GV T + D +F + L +P E+Y C+VEH + PL W + Sbjct: 162 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 221 Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241 S++ V G +GL+ + G + R Sbjct: 222 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 249 >gi|239740695 PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain isoform 1 [Homo sapiens] Length = 266 Score = 68.9 bits (167), Expect = 4e-12 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 6/151 (3%) Query: 91 VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150 V +HN + + T PEVTV+ L N L+C V +P + + W N Sbjct: 107 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163 Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPA 210 G GV T + D +F + L +P E+Y C+VEH + PL W + Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 223 Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241 S++ V G +GL+ + G + R Sbjct: 224 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 251 >gi|239740693 PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain isoform 2 [Homo sapiens] Length = 264 Score = 68.9 bits (167), Expect = 4e-12 Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 6/151 (3%) Query: 91 VLKHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSN 150 V +HN + + T PEVTV+ L N L+C V +P + + W N Sbjct: 105 VCRHNYGV---GESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 161 Query: 151 GHSVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPA 210 G GV T + D +F + L +P E+Y C+VEH + PL W + Sbjct: 162 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 221 Query: 211 PMSELTETVVCALGLSVGLVGIVVGTVLIIR 241 S++ V G +GL+ + G + R Sbjct: 222 AQSKMLSGVG---GFVLGLLFLGAGLFIYFR 249 >gi|155030211 major histocompatibility complex, class II, DR beta 1 precursor [Homo sapiens] Length = 266 Score = 68.6 bits (166), Expect = 5e-12 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 6/149 (4%) Query: 93 KHNLNIVIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGH 152 +HN +V + T P+VTV+ L N L+C V +P + + W NG Sbjct: 109 RHNYGVV---ESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFLNGQ 165 Query: 153 SVTEGVSETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPM 212 G+ T + D +F + L +P E+Y C+VEH + PL W + Sbjct: 166 EEKAGMVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSESAQ 225 Query: 213 SELTETVVCALGLSVGLVGIVVGTVLIIR 241 S++ V G +GL+ + G + R Sbjct: 226 SKMLSGVG---GFVLGLLFLGAGLFIYFR 251 >gi|239758092 PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain [Homo sapiens] Length = 253 Score = 68.2 bits (165), Expect = 7e-12 Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 3/129 (2%) Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172 PEVTV+ L N L+C V +P + + W NG GV T + D +F Sbjct: 113 PEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 172 Query: 173 KISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 232 + L +P E+Y C+VEH + PL W + S++ V G +GL+ + Sbjct: 173 TLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSGVG---GFVLGLLFL 229 Query: 233 VVGTVLIIR 241 G + R Sbjct: 230 GAGLFIYFR 238 >gi|18641375 major histocompatibility complex, class II, DR beta 5 precursor [Homo sapiens] Length = 266 Score = 68.2 bits (165), Expect = 7e-12 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 10/131 (7%) Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172 P+VTV+ TL N L+C V+ +P + + W N GV T + D +F Sbjct: 126 PKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQ 185 Query: 173 KISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 232 + L +P E+Y C+VEH + PL W + + S++ G+ G Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSESAQSKMLS----------GVGGF 235 Query: 233 VVGTVLIIRGL 243 V+G + + GL Sbjct: 236 VLGLLFLGAGL 246 >gi|24797076 major histocompatibility complex, class II, DP beta 1 precursor [Homo sapiens] Length = 258 Score = 67.8 bits (164), Expect = 9e-12 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 1/121 (0%) Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172 P V V L N L+C V + +P + + W NG T GV T+ + D +F Sbjct: 124 PRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQ 183 Query: 173 KISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSE-LTETVVCALGLSVGLVG 231 + L P ++Y C+VEH LD P+ W+ + + S+ LT LGL + VG Sbjct: 184 ILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDSARSKTLTGAGGFVLGLIICGVG 243 Query: 232 I 232 I Sbjct: 244 I 244 >gi|52630344 major histocompatibility complex, class II, DR beta 4 precursor [Homo sapiens] Length = 266 Score = 67.8 bits (164), Expect = 9e-12 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 3/129 (2%) Query: 113 PEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFF 172 P+VTV+ L N L+C V+ +P + + W NG GV T + D +F Sbjct: 126 PKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQ 185 Query: 173 KISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGI 232 + L +P E+Y C+VEH + PL W + S++ V G +GL+ + Sbjct: 186 TLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVG---GFVLGLLFL 242 Query: 233 VVGTVLIIR 241 G + R Sbjct: 243 GTGLFIYFR 251 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,656,090 Number of Sequences: 37866 Number of extensions: 419341 Number of successful extensions: 1133 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 994 Number of HSP's gapped (non-prelim): 144 length of query: 255 length of database: 18,247,518 effective HSP length: 100 effective length of query: 155 effective length of database: 14,460,918 effective search space: 2241442290 effective search space used: 2241442290 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.