Guide to the Human Genome
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Search of human proteins with 21361202

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|21361202 choline phosphate cytidylyltransferase 1 beta
isoform 1 [Homo sapiens]
         (369 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21361202 choline phosphate cytidylyltransferase 1 beta isofor...   750   0.0  
gi|253795514 choline phosphate cytidylyltransferase 1 beta isofo...   673   0.0  
gi|253795516 choline phosphate cytidylyltransferase 1 beta isofo...   658   0.0  
gi|31543385 choline phosphate cytidylyltransferase 1 alpha [Homo...   495   e-140
gi|4505651 phosphate cytidylyltransferase 2, ethanolamine [Homo ...   104   1e-22
gi|116014339 olfactomedin-like 2A [Homo sapiens]                       37   0.028
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ...    37   0.037
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [...    37   0.037
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]    34   0.24 
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]    34   0.24 
gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]    34   0.24 
gi|222352122 hypothetical protein LOC284297 [Homo sapiens]             33   0.31 
gi|218563737 hypothetical protein LOC124944 isoform 1 [Homo sapi...    33   0.31 
gi|52856421 hypothetical protein LOC124944 isoform 2 [Homo sapiens]    33   0.31 
gi|188497618 connector enhancer of kinase suppressor of Ras 1 [H...    33   0.31 
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa...    33   0.41 
gi|109255234 centrosomal protein 290kDa [Homo sapiens]                 33   0.41 
gi|193083191 synaptopodin 2 isoform c [Homo sapiens]                   33   0.41 
gi|193083185 synaptopodin 2 isoform b [Homo sapiens]                   33   0.41 
gi|193083183 synaptopodin 2 isoform a [Homo sapiens]                   33   0.41 
gi|10880975 hypothetical protein LOC57821 [Homo sapiens]               33   0.41 
gi|83367077 mucin 16 [Homo sapiens]                                    33   0.53 
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]             33   0.53 
gi|155030230 sorbin and SH3 domain containing 3 isoform 1 [Homo ...    33   0.53 
gi|38683860 insulin receptor substrate 2 [Homo sapiens]                33   0.53 
gi|218563739 hypothetical protein LOC124944 isoform 3 [Homo sapi...    32   0.70 
gi|150170729 microtubule associated serine/threonine kinase 3 [H...    32   0.70 
gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens]    32   0.70 
gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]         32   0.91 
gi|188528616 testis specific, 10 [Homo sapiens]                        32   0.91 

>gi|21361202 choline phosphate cytidylyltransferase 1 beta isoform 1
           [Homo sapiens]
          Length = 369

 Score =  750 bits (1936), Expect = 0.0
 Identities = 369/369 (100%), Positives = 369/369 (100%)

Query: 1   MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHE 60
           MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHE
Sbjct: 1   MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHE 60

Query: 61  KLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHK 120
           KLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHK
Sbjct: 61  KLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHK 120

Query: 121 FKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDD 180
           FKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDD
Sbjct: 121 FKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDD 180

Query: 181 VYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRY 240
           VYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRY
Sbjct: 181 VYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRY 240

Query: 241 RFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWK 300
           RFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWK
Sbjct: 241 RFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWK 300

Query: 301 QMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISS 360
           QMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISS
Sbjct: 301 QMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISS 360

Query: 361 MSEGDEDEK 369
           MSEGDEDEK
Sbjct: 361 MSEGDEDEK 369


>gi|253795514 choline phosphate cytidylyltransferase 1 beta isoform
           2 [Homo sapiens]
          Length = 351

 Score =  673 bits (1737), Expect = 0.0
 Identities = 335/346 (96%), Positives = 338/346 (97%), Gaps = 1/346 (0%)

Query: 25  ETMEEIEHTCPQP-RLTLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADG 83
           E + E ++  PQ  R TLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADG
Sbjct: 6   ECIMEEDNRAPQLWRKTLTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADG 65

Query: 84  IFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVD 143
           IFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVD
Sbjct: 66  IFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVD 125

Query: 144 EVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTS 203
           EVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTS
Sbjct: 126 EVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTS 185

Query: 204 DIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEF 263
           DIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEF
Sbjct: 186 DIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEF 245

Query: 264 VNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSS 323
           VNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSS
Sbjct: 246 VNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSS 305

Query: 324 PTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMSEGDEDEK 369
           PTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMSEGDEDEK
Sbjct: 306 PTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMSEGDEDEK 351


>gi|253795516 choline phosphate cytidylyltransferase 1 beta isoform
           3 [Homo sapiens]
          Length = 330

 Score =  658 bits (1698), Expect = 0.0
 Identities = 323/328 (98%), Positives = 324/328 (98%)

Query: 1   MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHE 60
           MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHE
Sbjct: 1   MPVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHE 60

Query: 61  KLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHK 120
           KLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHK
Sbjct: 61  KLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHK 120

Query: 121 FKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDD 180
           FKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDD
Sbjct: 121 FKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDD 180

Query: 181 VYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRY 240
           VYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRY
Sbjct: 181 VYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKELNVSFINEKRY 240

Query: 241 RFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWK 300
           RFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWK
Sbjct: 241 RFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGPDGAWK 300

Query: 301 QMFQERSSRMLQALSPKQSPVSSPTRSR 328
           QMFQERSSRMLQALSPKQSP+ S  R R
Sbjct: 301 QMFQERSSRMLQALSPKQSPLKSWARCR 328


>gi|31543385 choline phosphate cytidylyltransferase 1 alpha [Homo
           sapiens]
          Length = 367

 Score =  495 bits (1274), Expect = e-140
 Identities = 246/331 (74%), Positives = 279/331 (84%), Gaps = 8/331 (2%)

Query: 41  LTAPAPFADETNCQCQAPHEKLTIAQARLGTPADRPVRVYADGIFDLFHSGHARALMQAK 100
           L  PAPF+DE       P+ ++T+ +A  GTP +RPVRVYADGIFDLFHSGHARALMQAK
Sbjct: 41  LRQPAPFSDEIEVDFSKPYVRVTMEEASRGTPCERPVRVYADGIFDLFHSGHARALMQAK 100

Query: 101 TLFPNSYLLVGVCSDDLTHKFKGFTVMNEAERYEALRHCRYVDEVIRDAPWTLTPEFLEK 160
            LFPN+YL+VGVCSD+LTH FKGFTVMNE ERY+A++HCRYVDEV+R+APWTLTPEFL +
Sbjct: 101 NLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAE 160

Query: 161 HKIDFVAHDDIPYSSAGSDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYDVYARRN 220
           H+IDFVAHDDIPYSSAGSDDVYKHIKEAGMF PTQRTEGISTSDIITRIVRDYDVYARRN
Sbjct: 161 HRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVYARRN 220

Query: 221 LQRGYTAKELNVSFINEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEE 280
           LQRGYTAKELNVSFINEK+Y  Q +VDK+K+KVK+VEE+SKEFV +VEEKS DLIQKWEE
Sbjct: 221 LQRGYTAKELNVSFINEKKYHLQERVDKVKKKVKDVEEKSKEFVQKVEEKSIDLIQKWEE 280

Query: 281 KSREFIGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSW 340
           KSREFIG+FLE+FGP+GA K M +E   RMLQA+SPKQSP SSPTR     RSPSP+F W
Sbjct: 281 KSREFIGSFLEMFGPEGALKHMLKEGKGRMLQAISPKQSPSSSPTR----ERSPSPSFRW 336

Query: 341 -LPLKTSPPSSPKAAS---ASISSMSEGDED 367
               KTSPP SP   S   A+   +SE +ED
Sbjct: 337 PFSGKTSPPCSPANLSRHKAAAYDISEDEED 367


>gi|4505651 phosphate cytidylyltransferase 2, ethanolamine [Homo
           sapiens]
          Length = 389

 Score =  104 bits (259), Expect = 1e-22
 Identities = 52/141 (36%), Positives = 85/141 (60%), Gaps = 2/141 (1%)

Query: 70  GTPADRPVRVYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKGFTVMNE 129
           G    R VRV+ DG +D+ H GH+  L QA+ +    YL+VGV +D+   K KG  V  +
Sbjct: 16  GPGGRRAVRVWCDGCYDMVHYGHSNQLRQARAM--GDYLIVGVHTDEEIAKHKGPPVFTQ 73

Query: 130 AERYEALRHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAHDDIPYSSAGSDDVYKHIKEAG 189
            ERY+ ++  ++VDEV+  AP+  T E L+K+  DF  H +    +    D Y+ +K+AG
Sbjct: 74  EERYKMVQAIKWVDEVVPAAPYVTTLETLDKYNCDFCVHGNDITLTVDGRDTYEEVKQAG 133

Query: 190 MFVPTQRTEGISTSDIITRIV 210
            +   +RT+G+ST+D++ R++
Sbjct: 134 RYRECKRTQGVSTTDLVGRML 154



 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 7/156 (4%)

Query: 79  VYADGIFDLFHSGHARALMQAKTLFPNSYLLVGVCSDDLTHKFKG--FTVMNEAERYEAL 136
           +Y  G FDLFH GH   L +   L    Y++ G+  D   + +KG  + +MN  ER  ++
Sbjct: 216 IYVAGAFDLFHIGHVDFLEKVHRLAERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSV 275

Query: 137 RHCRYVDEVIRDAPWTLTPEFLEKHKIDFVAH--DDIPYSSAGSDDVYKHIKEAGMFVPT 194
             CRYV EV+  AP+ +T E L   K+D V H   +I     GSD  Y+  K  G+F   
Sbjct: 276 LACRYVSEVVIGAPYAVTAELLSHFKVDLVCHGKTEIIPDRDGSDP-YQEPKRRGIFRQI 334

Query: 195 QRTEGISTSDIITRIVRDYDVYARRNLQRGYTAKEL 230
                ++T  I+ RI+ +   Y  RN ++   AKEL
Sbjct: 335 DSGSNLTTDLIVQRIITNRLEYEARNQKK--EAKEL 368


>gi|116014339 olfactomedin-like 2A [Homo sapiens]
          Length = 652

 Score = 37.0 bits (84), Expect = 0.028
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 4/70 (5%)

Query: 295 PDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAA 354
           P+ A +   + RSS  +   S   +P S P  + + + +P+PT S LP  T PPS P+ +
Sbjct: 332 PNSAEQDEAEPRSSERVDLASG--TPTSIPATTTTATTTPTPTTSLLP--TEPPSGPEVS 387

Query: 355 SASISSMSEG 364
           S    +  EG
Sbjct: 388 SQGREASCEG 397


>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
           [Homo sapiens]
          Length = 624

 Score = 36.6 bits (83), Expect = 0.037
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 237 EKRYRFQNQVDKMKEKVKNVE-ERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGP 295
           E+    +   DK KEK ++ E ER K+    ++EK     +K ++KSR    ++      
Sbjct: 436 EREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEK-----RKKDKKSRTPPRSY------ 484

Query: 296 DGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSP 336
           + + +     R  R  ++ S  +SP +S T  R  SRSPSP
Sbjct: 485 NASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSP 525


>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
           [Homo sapiens]
          Length = 508

 Score = 36.6 bits (83), Expect = 0.037
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 12/101 (11%)

Query: 237 EKRYRFQNQVDKMKEKVKNVE-ERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFGP 295
           E+    +   DK KEK ++ E ER K+    ++EK     +K ++KSR    ++      
Sbjct: 320 EREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEK-----RKKDKKSRTPPRSY------ 368

Query: 296 DGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSP 336
           + + +     R  R  ++ S  +SP +S T  R  SRSPSP
Sbjct: 369 NASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSP 409


>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 178  SDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYD-VYARRNL-QRGYTAKELNVSFI 235
            ++D    IKE    +   + E    +  ++++++DYD + A R+L  +  +A +   +  
Sbjct: 903  NNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTNNP 962

Query: 236  NEKRYRFQNQVDKMKEKV-KNVEERSKEFVNRVEEKSHDLIQK 277
             E   R Q ++ +MKEK+ +NV  R+   +   EE+ +DL++K
Sbjct: 963  KEAGQRLQ-KLQEMKEKLGRNVNMRAMNVLTEAEERYNDLMKK 1004


>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 178  SDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYD-VYARRNL-QRGYTAKELNVSFI 235
            ++D    IKE    +   + E    +  ++++++DYD + A R+L  +  +A +   +  
Sbjct: 903  NNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTNNP 962

Query: 236  NEKRYRFQNQVDKMKEKV-KNVEERSKEFVNRVEEKSHDLIQK 277
             E   R Q ++ +MKEK+ +NV  R+   +   EE+ +DL++K
Sbjct: 963  KEAGQRLQ-KLQEMKEKLGRNVNMRAMNVLTEAEERYNDLMKK 1004


>gi|110347420 structural maintenance of chromosomes 2 [Homo sapiens]
          Length = 1197

 Score = 33.9 bits (76), Expect = 0.24
 Identities = 27/103 (26%), Positives = 55/103 (53%), Gaps = 4/103 (3%)

Query: 178  SDDVYKHIKEAGMFVPTQRTEGISTSDIITRIVRDYD-VYARRNL-QRGYTAKELNVSFI 235
            ++D    IKE    +   + E    +  ++++++DYD + A R+L  +  +A +   +  
Sbjct: 903  NNDSQLKIKELDHNISKHKREAEDGAAKVSKMLKDYDWINAERHLFGQPNSAYDFKTNNP 962

Query: 236  NEKRYRFQNQVDKMKEKV-KNVEERSKEFVNRVEEKSHDLIQK 277
             E   R Q ++ +MKEK+ +NV  R+   +   EE+ +DL++K
Sbjct: 963  KEAGQRLQ-KLQEMKEKLGRNVNMRAMNVLTEAEERYNDLMKK 1004


>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
          Length = 1573

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 2    PVVTTDAESETGIPKSLSNEPPSETMEEIEHTCPQPRLTLTAPAPFADETNCQCQAPHEK 61
            PV+TT       +P SL  E  S T+         P+LT TAPAP    +      P   
Sbjct: 1334 PVITT-----VSLPTSLGTELSSPTLAPTVKPSLHPQLTFTAPAPHTSTSQIPTLEPSPA 1388

Query: 62   LTIAQARLGT 71
            L  + +R  T
Sbjct: 1389 LESSPSRSST 1398


>gi|218563737 hypothetical protein LOC124944 isoform 1 [Homo
           sapiens]
          Length = 192

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 20/108 (18%)

Query: 277 KWEEKSREFIGNFLELFGPD-----------------GAWKQMFQERSSRMLQALSPKQS 319
           KW E   E +   ++ FG D                    K+   E S   L A SPK+ 
Sbjct: 41  KWTETEIEMLRAAVKRFGDDLNHISCVIKERTVAQIKATVKRKVYEDSGIPLPAESPKKG 100

Query: 320 P--VSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMSEGD 365
           P  V+S   S  P+ +P P+ S +P    PP   + A  ++S++++ D
Sbjct: 101 PKKVASGVLSPPPA-APPPSSSSVPEAGGPPIKKQKADVTLSALNDSD 147


>gi|52856421 hypothetical protein LOC124944 isoform 2 [Homo sapiens]
          Length = 172

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 20/108 (18%)

Query: 277 KWEEKSREFIGNFLELFGPD-----------------GAWKQMFQERSSRMLQALSPKQS 319
           KW E   E +   ++ FG D                    K+   E S   L A SPK+ 
Sbjct: 41  KWTETEIEMLRAAVKRFGDDLNHISCVIKERTVAQIKATVKRKVYEDSGIPLPAESPKKG 100

Query: 320 P--VSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMSEGD 365
           P  V+S   S  P+ +P P+ S +P    PP   + A  ++S++++ D
Sbjct: 101 PKKVASGVLSPPPA-APPPSSSSVPEAGGPPIKKQKADVTLSALNDSD 147


>gi|188497618 connector enhancer of kinase suppressor of Ras 1 [Homo
           sapiens]
          Length = 713

 Score = 33.5 bits (75), Expect = 0.31
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 235 INEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSREFIGNFLELFG 294
           +NE+ +R +     +K K++ ++    E V    E + +  ++W+E++RE     L    
Sbjct: 609 LNERVHRVRALQSTLKAKLQELQVL--EEVLGDPELTGEKFRQWKEQNRELYSEGL---- 662

Query: 295 PDGAWKQMFQERSSRMLQALSPKQSPVSSPT 325
             GAW     E SS +L + S +QSP S P+
Sbjct: 663 --GAWGVAQAEGSSHILTSDSTEQSPHSLPS 691


>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
           sapiens]
          Length = 750

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 9/57 (15%)

Query: 237 EKRYRFQNQVDKMKEKVKNVEE---------RSKEFVNRVEEKSHDLIQKWEEKSRE 284
           EK +R + ++ + +EK++  EE         R +E + R EEK H+  + WEE+ R+
Sbjct: 510 EKVWRQEEKIREQEEKIREQEEKMWRQEEKIREQEEMWREEEKMHEQEKIWEEEKRQ 566



 Score = 28.9 bits (63), Expect = 7.7
 Identities = 13/48 (27%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 237 EKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKSRE 284
           EK ++ + ++ + +EK++  EE+ +E   ++ E+  ++ Q+ EEK  E
Sbjct: 605 EKMWKQEEKIREQEEKIQEQEEKIREQEEKIREQ-EEMTQEQEEKMGE 651


>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
          Length = 2479

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 12/96 (12%)

Query: 197 TEGISTSDIITRIVRDYDVYARRNLQRGYTAKE-LNVSFINEKR---------YRFQNQV 246
           TE IS  D I+   R  D+ + +N+    +  E L+   I ++R          +FQN++
Sbjct: 580 TENISQGDRISE--RKLDLLSLKNMSEAQSKNEFLSRELIEKERDLERSRTVIAKFQNKL 637

Query: 247 DKMKEKVKNVEERSKEFVNRVEEKSHDLIQKWEEKS 282
            ++ E+ K +EE  KE +  ++E   D   K  E S
Sbjct: 638 KELVEENKQLEEGMKEILQAIKEMQKDPDVKGGETS 673


>gi|193083191 synaptopodin 2 isoform c [Homo sapiens]
          Length = 1109

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 293  FGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPK 352
            F P  A   + Q+ S ++  AL+ KQ+    P  + SP+   + +   +P  TSPPS   
Sbjct: 979  FQPPDAKDGLPQKSSVKVNSALAMKQALPPRPVNAASPTNVQASSVYSVPAYTSPPSFFA 1038

Query: 353  AASASISS 360
             AS+ +S+
Sbjct: 1039 EASSPVSA 1046



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 286 IGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWL---- 341
           +G   EL G  G   Q+F +R SRM + +    +  +   R++SP  +PS   SW     
Sbjct: 859 VGPSNELPGMSGRGAQLFAKRQSRMEKYVVDSDTVQAHAARAQSP--TPSLPASWKYSSN 916

Query: 342 -----PLKTSPPSSPKAASASISSMSEGDEDEK 369
                P+  +P  SP    A++ S     +  K
Sbjct: 917 VRAPPPVAYNPIHSPSYPLAALKSQPSAAQPSK 949


>gi|193083185 synaptopodin 2 isoform b [Homo sapiens]
          Length = 1093

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 293  FGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPK 352
            F P  A   + Q+ S ++  AL+ KQ+    P  + SP+   + +   +P  TSPPS   
Sbjct: 979  FQPPDAKDGLPQKSSVKVNSALAMKQALPPRPVNAASPTNVQASSVYSVPAYTSPPSFFA 1038

Query: 353  AASASISS 360
             AS+ +S+
Sbjct: 1039 EASSPVSA 1046



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 286 IGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWL---- 341
           +G   EL G  G   Q+F +R SRM + +    +  +   R++SP  +PS   SW     
Sbjct: 859 VGPSNELPGMSGRGAQLFAKRQSRMEKYVVDSDTVQAHAARAQSP--TPSLPASWKYSSN 916

Query: 342 -----PLKTSPPSSPKAASASISSMSEGDEDEK 369
                P+  +P  SP    A++ S     +  K
Sbjct: 917 VRAPPPVAYNPIHSPSYPLAALKSQPSAAQPSK 949


>gi|193083183 synaptopodin 2 isoform a [Homo sapiens]
          Length = 1261

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 293  FGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPK 352
            F P  A   + Q+ S ++  AL+ KQ+    P  + SP+   + +   +P  TSPPS   
Sbjct: 979  FQPPDAKDGLPQKSSVKVNSALAMKQALPPRPVNAASPTNVQASSVYSVPAYTSPPSFFA 1038

Query: 353  AASASISS 360
             AS+ +S+
Sbjct: 1039 EASSPVSA 1046



 Score = 30.8 bits (68), Expect = 2.0
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 286 IGNFLELFGPDGAWKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWL---- 341
           +G   EL G  G   Q+F +R SRM + +    +  +   R++SP  +PS   SW     
Sbjct: 859 VGPSNELPGMSGRGAQLFAKRQSRMEKYVVDSDTVQAHAARAQSP--TPSLPASWKYSSN 916

Query: 342 -----PLKTSPPSSPKAASASISSMSEGDEDEK 369
                P+  +P  SP    A++ S     +  K
Sbjct: 917 VRAPPPVAYNPIHSPSYPLAALKSQPSAAQPSK 949


>gi|10880975 hypothetical protein LOC57821 [Homo sapiens]
          Length = 508

 Score = 33.1 bits (74), Expect = 0.41
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 235 INEKRYRFQNQVDKMKEKVKNVEERSKEFVNRVEEKSHDLIQK-WEEKSRE 284
           ++ ++   Q Q+++ +EK+K  EER K    + +++ +D++ K W +K RE
Sbjct: 335 LSPRQKELQKQLEEKREKLKREEERRKIEEEKEKKRENDIVFKAWLQKKRE 385


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 315  SPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASASISSMS 362
            SP +SP  +   +   S SPSP  +W  L +  P   + + A++SS+S
Sbjct: 3268 SPTKSPTENMLATERVSLSPSPPEAWTNLYSGTPGGTRQSLATMSSVS 3315


>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
          Length = 1970

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 315  SPKQSPVSSPTRSRSPSRSP-SPTFSWLPLK------TSPPSSPKAASASISS--MSEGD 365
            SPK SP S      SP  SP SPT+S    K      TSP  SP + + S++S  +S  D
Sbjct: 1906 SPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDD 1965

Query: 366  EDEK 369
             DE+
Sbjct: 1966 SDEE 1969



 Score = 30.4 bits (67), Expect = 2.6
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 303  FQERSSRMLQALSPKQSPVSSPTRSRSPSRSP-SPTFSWLPLKTSPPSSPKAASASISSM 361
            ++ RS       SP  SP S      SPS SP SP +S     TSP  SP + S S +S 
Sbjct: 1600 YEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYS----PTSPSYSPTSPSYSPTSP 1655

Query: 362  S 362
            S
Sbjct: 1656 S 1656



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 315  SPKQSPVSSPTRSRSPSRSP-SPTFSWLPLKTSPPSSPKAASASISSMS 362
            SP  SP S      SPS SP SP++S     TSP  SP + S S +S S
Sbjct: 1640 SPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPS 1684



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 315  SPKQSPVSSPTRSRSPSRSP-SPTFSWLPLKTSPPSSPKAASASISSMS 362
            SP  SP S      SPS SP SP++S     TSP  SP + S S +S S
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPS 1712



 Score = 30.0 bits (66), Expect = 3.5
 Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 315  SPKQSPVSSPTRSRSPSRSP-SPTFSWLPLKTSPPSSPKAASASISSMS 362
            SP  SP S      SPS SP SP++S     TSP  SP + S S +S S
Sbjct: 1696 SPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPS 1740



 Score = 28.9 bits (63), Expect = 7.7
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 315  SPKQSPVSSPTRSRSPSRSP-SPTFSWLPLKTSPPSSPKAASASISS 360
            SPK SP S      SP  SP SPT+S     T+P  SP + + S +S
Sbjct: 1857 SPKYSPTSPKYSPTSPKYSPTSPTYS----PTTPKYSPTSPTYSPTS 1899


>gi|155030230 sorbin and SH3 domain containing 3 isoform 1 [Homo
           sapiens]
          Length = 671

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 244 NQVDKMKEKVKNV--EERSKEFVNRVE---EKSHDLIQKWEEKSREFIGNFLELFGPDGA 298
           NQV + +EKV NV  EE   +F+  +E        L+    EK  + I   LE    + A
Sbjct: 224 NQVLRRREKVDNVWTEESWNQFLQELETGQRPKKPLVDDPGEKPSQPIEVLLER---ELA 280

Query: 299 WKQMFQERSSRMLQALSPKQSPVSSPTRSRSPSRSP--SPTFSWLPLKTSPPSSPKAASA 356
                 ++  R ++   P  SP SSP   R+P + P   P  +W       P    A S 
Sbjct: 281 ELSAELDKDLRAIETRLP--SPKSSPAPRRAPEQRPPAGPASAWSSSYPHAPYLGSARSL 338

Query: 357 SISSMSEG 364
           S   M++G
Sbjct: 339 SPHKMADG 346


>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
          Length = 1338

 Score = 32.7 bits (73), Expect = 0.53
 Identities = 20/51 (39%), Positives = 25/51 (49%)

Query: 307 SSRMLQALSPKQSPVSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASAS 357
           SS +L A SP  S  S    + S SR  SP   ++ L  S P SPK  + S
Sbjct: 945 SSSLLSASSPASSLGSGTPGTSSDSRQRSPLSDYMNLDFSSPKSPKPGAPS 995


>gi|218563739 hypothetical protein LOC124944 isoform 3 [Homo
           sapiens]
          Length = 138

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 300 KQMFQERSSRMLQALSPKQSP--VSSPTRSRSPSRSPSPTFSWLPLKTSPPSSPKAASAS 357
           K+   E S   L A SPK+ P  V+S   S  P+ +P P+ S +P    PP   + A  +
Sbjct: 47  KRKVYEDSGIPLPAESPKKGPKKVASGVLSPPPA-APPPSSSSVPEAGGPPIKKQKADVT 105

Query: 358 ISSMSEGD 365
           +S++++ D
Sbjct: 106 LSALNDSD 113


>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
            sapiens]
          Length = 1309

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 10/65 (15%)

Query: 307  SSRMLQALSPKQSPVSSPTRSRSPS-----RSPSPTFSWLPLKT--SPPSSPKAASASIS 359
            SS +  +LS  +S   SPT S SPS     RSP+P    +P  T  SPPS+  ++S+  S
Sbjct: 1093 SSGLHHSLSSSESLPGSPTHSLSPSPTTPCRSPAPD---VPADTTASPPSASPSSSSPAS 1149

Query: 360  SMSEG 364
              + G
Sbjct: 1150 PAAAG 1154


>gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens]
          Length = 431

 Score = 32.3 bits (72), Expect = 0.70
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 299 WKQMFQERSSRM--LQALSPKQSPVSSPTRSRSPSRSPSPTFSW-LPLKTSPPSSPKAAS 355
           W+  F+  +SR   L  L P + P   PT    P + P  TFSW LP+K  P S   A+ 
Sbjct: 362 WRLHFEFVTSREPGLVLLPPVEQP--EPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASY 419

Query: 356 AS 357
           A+
Sbjct: 420 AA 421


>gi|4507163 SRY (sex determining region Y)-box 4 [Homo sapiens]
          Length = 474

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 8/63 (12%)

Query: 313 ALSPKQSPVSSPTRSRSPS--------RSPSPTFSWLPLKTSPPSSPKAASASISSMSEG 364
           +LS + S  SSP   RSP+        R+ SP  S  P   S  +S  ++S+S S  S  
Sbjct: 338 SLSGRSSAASSPAAGRSPADHRGYASLRAASPAPSSAPSHASSSASSHSSSSSSSGSSSS 397

Query: 365 DED 367
           D++
Sbjct: 398 DDE 400


>gi|188528616 testis specific, 10 [Homo sapiens]
          Length = 698

 Score = 32.0 bits (71), Expect = 0.91
 Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 15/108 (13%)

Query: 192 VPTQRTEGISTSDIITRIVRDYDVYARRN--LQRGYTAKELNVSFINEKRYRFQNQVDKM 249
           V   R +   T+D + +I R+ D+ A  N  LQ  +   +     +++K     N+++ +
Sbjct: 326 VSRMRRQLDETNDELAQIARERDILAHDNDNLQEQFAKAKQENQALSKKLNDTHNELNDI 385

Query: 250 KEKVK--NVEERSKEFVNRVEE-----------KSHDLIQKWEEKSRE 284
           K+KV+  N+E    + + + EE           K+++  + WE K+R+
Sbjct: 386 KQKVQDTNLEVNKLKNILKSEESENRQMMEQLRKANEDAENWENKARQ 433


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.130    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,820,762
Number of Sequences: 37866
Number of extensions: 750215
Number of successful extensions: 6531
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 133
Number of HSP's that attempted gapping in prelim test: 5984
Number of HSP's gapped (non-prelim): 671
length of query: 369
length of database: 18,247,518
effective HSP length: 104
effective length of query: 265
effective length of database: 14,309,454
effective search space: 3792005310
effective search space used: 3792005310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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