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Search of human proteins with 21359951
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21359951 RNA binding motif protein 42 [Homo sapiens]
(480 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21359951 RNA binding motif protein 42 [Homo sapiens] 966 0.0
gi|110832843 TBP-associated factor 4 [Homo sapiens] 68 2e-11
gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 67 3e-11
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens] 66 6e-11
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 66 6e-11
gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 66 8e-11
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 65 1e-10
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 65 1e-10
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 64 3e-10
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 62 1e-09
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 62 1e-09
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 62 1e-09
gi|149773456 hypothetical protein LOC643314 [Homo sapiens] 61 2e-09
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 61 3e-09
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 60 3e-09
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 60 3e-09
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 60 4e-09
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 60 6e-09
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 60 6e-09
gi|7706501 WW domain binding protein 11 [Homo sapiens] 60 6e-09
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 59 7e-09
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 59 1e-08
gi|4502847 cold inducible RNA binding protein [Homo sapiens] 59 1e-08
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 58 2e-08
gi|27436925 synoviolin 1 isoform a [Homo sapiens] 57 5e-08
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 57 5e-08
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 56 8e-08
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 56 8e-08
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 55 1e-07
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 55 1e-07
>gi|21359951 RNA binding motif protein 42 [Homo sapiens]
Length = 480
Score = 966 bits (2496), Expect = 0.0
Identities = 480/480 (100%), Positives = 480/480 (100%)
Query: 1 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV 60
MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV
Sbjct: 1 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV 60
Query: 61 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV 120
PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV
Sbjct: 61 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFV 120
Query: 121 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP 180
GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP
Sbjct: 121 GPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGP 180
Query: 181 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG 240
RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG
Sbjct: 181 RPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG 240
Query: 241 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL 300
LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL
Sbjct: 241 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL 300
Query: 301 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI 360
PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI
Sbjct: 301 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCI 360
Query: 361 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK 420
RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK
Sbjct: 361 RTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGK 420
Query: 421 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR 480
TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR
Sbjct: 421 TKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR 480
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 68.2 bits (165), Expect = 2e-11
Identities = 107/391 (27%), Positives = 132/391 (33%), Gaps = 71/391 (18%)
Query: 2 AGAGPAPGLPGAGG--PVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTA 59
AGAGPA GA G P P G PG G +R G P P P
Sbjct: 71 AGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRP---------------GPPSPRRPL- 114
Query: 60 VPAVPTVPTV-----PTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMV 114
VPA P P P A P + A A AA A P
Sbjct: 115 VPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGP 174
Query: 115 GGPPFVGPVGFGPGDRSHLDSPEARE---AMFLRRAAVAPQRA----------PILRPAF 161
G P GP G GPG + + + A+ A AP + P+ +PA
Sbjct: 175 GPGPGPGP-GPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAA 233
Query: 162 VPHVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSM 221
V+Q AAA P P A PP P PP PP +AR PG P G
Sbjct: 234 PGTVIQTPPFV--GAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPP 291
Query: 222 AALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGG--------- 272
A P + PAA + G A +G AA A A G
Sbjct: 292 TA-APAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRV 350
Query: 273 -----------APAGPA------VIGPSLPLALAMPLPEPEPLP-LPLEVVRGLLPPLRI 314
A +GPA VIGP++ AL P P P P P + +G +
Sbjct: 351 VQAAPPAAQTLAASGPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAG--AV 408
Query: 315 PELLSLRPRPRPP--RPEPPPGLMALEVPEP 343
+ LS P R P ++A +P+P
Sbjct: 409 TQSLSRTPTATTSGIRATLTPTVLAPRLPQP 439
Score = 61.2 bits (147), Expect = 2e-09
Identities = 95/380 (25%), Positives = 128/380 (33%), Gaps = 80/380 (21%)
Query: 2 AGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPV-------- 53
AG GP PG PG G PGPG G P +G + + AL AP
Sbjct: 170 AGPGPGPG-PGPG----PGPGPGKP--AGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGP 222
Query: 54 -------------------PGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQ 94
P + A P P P+ P A PAA P A T +
Sbjct: 223 AALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLAR 282
Query: 95 VQQTLEARAAAAATVVPPMV-------GGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRA 147
AA V PP G P P GP S P A A
Sbjct: 283 PPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGA--------A 334
Query: 148 AVAPQRAPILRPAFVPHVLQRADSALSS-AAAGPRPMALRPPHQALVGPPLPGPPGPPMM 206
A AP AP ++ V+Q A A + AA+GP A ++GP + G P
Sbjct: 335 AAAP--APGVKAESPKRVVQAAPPAAQTLAASGPASTAA----SMVIGPTMQGALPSPAA 388
Query: 207 LPPMARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAV 266
+PP A PG P G L + AA G + A +G+ A+
Sbjct: 389 VPPPA--PGTPTG--------LPKGAA--------GAVTQSLSRTPTATTSGIR-ATLTP 429
Query: 267 AVGAGGAPAGPA----VIGPSLPLALAMPLPEP-EPLPLPLEVVRGLLPPLRIPELLSLR 321
V A P P + LP + + E + L +P + + + ++
Sbjct: 430 TVLAPRLPQPPQNPTNIQNFQLPPGMVLVRSENGQLLMIPQQALAQMQAQAHAQPQTTMA 489
Query: 322 PRPRPPRPEPPPGLMALEVP 341
PRP P PP + ++ P
Sbjct: 490 PRPATPTSAPPVQISTVQAP 509
Score = 53.1 bits (126), Expect = 5e-07
Identities = 85/326 (26%), Positives = 102/326 (31%), Gaps = 57/326 (17%)
Query: 88 ATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPG---DRSHLDSPEAREAMFL 144
A + + +T E RAAAA + +V G P G G GP + + +PE A
Sbjct: 37 AAHHHHLAPRTPEVRAAAAGALGNHVVSGSP-AGAAGAGPAAPAEGAPGAAPEPPPAGRA 95
Query: 145 RRAAVAPQRA--PILRPAFVPHVLQRADSALSSAAAGPRPMA--LRPPHQALVGP----- 195
R PQR P R VP AGP P A LRPP + G
Sbjct: 96 RPGGGGPQRPGPPSPRRPLVP--------------AGPAPPAAKLRPPPEGSAGSCAPVP 141
Query: 196 --------PLPGPPGPPMMLPPMARA----PGPPLGSMAALRPPLEEPAAPRELG-LGLG 242
P P P GP P A A PGP G P +PA P L
Sbjct: 142 AAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGS 201
Query: 243 LGLKEKEEAVVAAAAGLEEASAAVA-----------------VGAGGAPAGPAVIGPSLP 285
L A A + + AA+ VGA PA A P+ P
Sbjct: 202 AALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAP 261
Query: 286 LALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLG 345
A P P P P + R P P P P + G P G
Sbjct: 262 APAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGG 321
Query: 346 EDKKKGKPEKLKRCIRTAAGSSWEDP 371
G+P A G E P
Sbjct: 322 PAGVSGQPGPGAAAAAPAPGVKAESP 347
Score = 30.0 bits (66), Expect = 4.9
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 31 EERLKEMEAEMALFEQEVLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVI-RPIIAT 89
++ L +M+A+ Q + AP P PT+ P V + +Q P P+I R + T
Sbjct: 470 QQALAQMQAQAHAQPQTTM-APRPATPTSAPPVQ-------ISTVQAPGTPIIARQVTPT 521
Query: 90 NTYQQVQQ 97
+QV Q
Sbjct: 522 TIIKQVSQ 529
>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
Length = 386
Score = 67.4 bits (163), Expect = 3e-11
Identities = 31/75 (41%), Positives = 48/75 (64%)
Query: 379 DDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRA 438
D F +F GDL E+ + + AF+ F A+V++D TGK+KGYGFVSF + D A
Sbjct: 104 DHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENA 163
Query: 439 MREMNGKYVGSRPIK 453
+++M G+++G R I+
Sbjct: 164 IQQMGGQWLGGRQIR 178
Score = 40.0 bits (92), Expect = 0.005
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++CG + + + + ++ + FS F ++ +V DK GY FV F A+ +
Sbjct: 216 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSV 269
Query: 443 NGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKK 475
NG + + K W LD++ Q++ +
Sbjct: 270 NGTTIEGHVV---KCYWGKETLDMINPVQQQNQ 299
Score = 34.3 bits (77), Expect = 0.26
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ G+L +V + ++ + FS+ K+I D T Y FV F + A+ M
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 443 NGKYVGSRPIKLR-----KSMWKDRNLDVVRKKQKEK 474
NG+ + + +K+ S KD + V Q+ +
Sbjct: 67 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQ 103
>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
Length = 392
Score = 66.2 bits (160), Expect = 6e-11
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 378 ADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVR 437
++ F +F GDL E+ + + AF+ F A+V++D TGK+KGYGFVSF + D
Sbjct: 111 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 170
Query: 438 AMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 476
A+ M G+++G R I ++ W R + Q+ K
Sbjct: 171 AIVHMGGQWLGGRQI---RTNWATRKPPAPKSTQENNTK 206
Score = 37.0 bits (84), Expect = 0.040
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++CG + + + D ++ + FS F ++ +V +K GY FV F A+ +
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSV 277
Query: 443 NGKYVGSRPIKLRKSMWKDRNLDVVRKKQK 472
NG + + K W + D+ + Q+
Sbjct: 278 NGTTIEGHVV---KCYWGKESPDMTKNFQQ 304
Score = 31.2 bits (69), Expect = 2.2
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 373 LLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRD----KRTGKTKG----- 423
++E D ++ G+L +V + ++ + FS+ K+I + +R + G
Sbjct: 1 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQ 60
Query: 424 ------YGFVSFKDPSDYVRAMREMNGKYVGSRPIKL 454
Y FV F + D A+ MNG+ + + +K+
Sbjct: 61 HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 97
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 66.2 bits (160), Expect = 6e-11
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 378 ADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVR 437
++ F +F GDL E+ + + AF+ F A+V++D TGK+KGYGFVSF + D
Sbjct: 94 SNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAEN 153
Query: 438 AMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKK 476
A+ M G+++G R I ++ W R + Q+ K
Sbjct: 154 AIVHMGGQWLGGRQI---RTNWATRKPPAPKSTQENNTK 189
Score = 37.0 bits (84), Expect = 0.040
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 9/90 (10%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++CG + + + D ++ + FS F ++ +V +K GY FV F A+ +
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSV 260
Query: 443 NGKYVGSRPIKLRKSMWKDRNLDVVRKKQK 472
NG + + K W + D+ + Q+
Sbjct: 261 NGTTIEGHVV---KCYWGKESPDMTKNFQQ 287
Score = 34.7 bits (78), Expect = 0.20
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 373 LLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDP 432
++E D ++ G+L +V + ++ + FS+ K+I + + Y FV F +
Sbjct: 1 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEH 58
Query: 433 SDYVRAMREMNGKYVGSRPIKL 454
D A+ MNG+ + + +K+
Sbjct: 59 RDAAAALAAMNGRKILGKEVKV 80
>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
Length = 375
Score = 65.9 bits (159), Expect = 8e-11
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 378 ADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVR 437
++ F +F GDL E+ + + AF+ F A+V++D TGK+KGYGFVSF + D
Sbjct: 92 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAEN 151
Query: 438 AMREMNGKYVGSRPIK 453
A+++M G+++G R I+
Sbjct: 152 AIQQMGGQWLGGRQIR 167
Score = 40.0 bits (92), Expect = 0.005
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 9/93 (9%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++CG + + + + ++ + FS F ++ +V DK GY FV F A+ +
Sbjct: 205 VYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDK------GYSFVRFNSHESAAHAIVSV 258
Query: 443 NGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKK 475
NG + + K W LD++ Q++ +
Sbjct: 259 NGTTIEGHVV---KCYWGKETLDMINPVQQQNQ 288
Score = 33.5 bits (75), Expect = 0.44
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ G+L +V + ++ + FS+ K+I D T Y FV F + A+ M
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 443 NGKYVGSRPIKL 454
NG+ + + +K+
Sbjct: 67 NGRKIMGKEVKV 78
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 65.5 bits (158), Expect = 1e-10
Identities = 79/328 (24%), Positives = 117/328 (35%), Gaps = 60/328 (18%)
Query: 54 PGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQ-----QVQQTLEARA----- 103
P P+A P++ T+P+ P Q P + P+ A + Q QV +L + +
Sbjct: 345 PPSPSAPPSLQTLPSPPATPPSQAPPSMTTPPMQAPPSLQTIPPIQVPHSLTSPSLQAPP 404
Query: 104 ---AAAATVVPPMVGGPPFVGPVGF--------------------GPGDRSHLDSPEARE 140
A ++ +G P F P D L +P +
Sbjct: 405 SPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLSLP 464
Query: 141 AMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGP 200
A + +++P +P+ P + H LQ S S + P + PP +
Sbjct: 465 ASPPLQTSLSPAVSPLSSPLTI-HPLQALSSLASHSPQAPLSSLIMPPLET------QSS 517
Query: 201 PGPPMMLPPMARAPGPPLGSMAALR-PPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGL 259
PP + P A PPL ++ +L PPL+ +AP L E A L
Sbjct: 518 LAPPSLQTPPASLTTPPLENLPSLAPPPLQTASAP--------LTTPHLETPPCPAPCPL 569
Query: 260 EEASAAVAVGAGGAPAGPAVIGPSLPLALAMP----LPEPEPLPLPLEVVRGLLPPLRIP 315
+ + + P+ A P P ALA P LP P PL PP + P
Sbjct: 570 QAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPL-------ATPPPQAP 622
Query: 316 ELLSLRPRPRPPRPEPPPGLMALEVPEP 343
L+L P PP P P L L P P
Sbjct: 623 PXLALPPLQAPPSPPASPPLSPLATPSP 650
Score = 63.5 bits (153), Expect = 4e-10
Identities = 82/300 (27%), Positives = 108/300 (36%), Gaps = 35/300 (11%)
Query: 38 EAEMALFEQEVLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIA--TNTYQQV 95
+A AL + G P P + P P + +Q P +P P ++ Q
Sbjct: 593 QAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSPQA 652
Query: 96 QQTLEARAAAAATVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAP 155
L A PP PP P SP A + +A P +AP
Sbjct: 653 PNALAVHLLQAPFSPPP---SPPVQAPF-----------SPPASPP--VSPSATPPSQAP 696
Query: 156 ILRPAFVPHVLQRADSALSSAAAGPRPMALRPPHQA---LVGPPLPGPPGPPMMLPPMAR 212
P+ LQ S +S P + PP QA L PPL PP PP P
Sbjct: 697 ---PSLAAPPLQVPPSPPASPPMSP---SATPPPQAPPPLAAPPLQVPPSPPASPPMSPS 750
Query: 213 APGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVVA-AAAGLEEASAAVAVGAG 271
A PP PPL+ P +P L + K +A A A L+ + A G
Sbjct: 751 ATPPPRVPPLLAAPPLQVPPSP-PASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPG 809
Query: 272 GAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEP 331
AP P+ SLP++ PL P P P+ L P P +L+ RPP P P
Sbjct: 810 QAPFSPSA---SLPMS---PLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGP 863
Score = 59.7 bits (143), Expect = 6e-09
Identities = 79/310 (25%), Positives = 108/310 (34%), Gaps = 41/310 (13%)
Query: 54 PGIPTAV-PAVPTVPTVPTVEAMQV--------PAAPVIRPIIATNTYQQVQQTLEARAA 104
P + T++ PAV + + T+ +Q P AP+ I+ Q +
Sbjct: 467 PPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTP 526
Query: 105 AAATVVPPMVGGPPFVGP---VGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAF 161
A+ PP+ P P P HL++P A P +AP
Sbjct: 527 PASLTTPPLENLPSLAPPPLQTASAPLTTPHLETPPC--------PAPCPLQAP------ 572
Query: 162 VPHVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAP--GPPLG 219
P L S+ A P P A PP AL PPL G P PP L P+A P PP
Sbjct: 573 -PSPLTTPPPETPSSIATPPPQA--PP--ALASPPLQGLPSPP--LSPLATPPPQAPPXL 625
Query: 220 SMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAV 279
++ L+ P PA+P L AV A + PA P V
Sbjct: 626 ALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPV 685
Query: 280 IGPSLPLALAMPLPEPEPLPLPLE------VVRGLLPPLRIPELLSLRPRPRPPRPEPPP 333
+ P + A P PL +P + PP + P L+ P PP P P
Sbjct: 686 SPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASP 745
Query: 334 GLMALEVPEP 343
+ P P
Sbjct: 746 PMSPSATPPP 755
Score = 59.3 bits (142), Expect = 7e-09
Identities = 85/318 (26%), Positives = 110/318 (34%), Gaps = 54/318 (16%)
Query: 51 APVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVV 110
A P P A P+ P P V +Q P +P P + + + +A +
Sbjct: 638 ASPPLSPLATPS-PQAPNALAVHLLQAPFSPPPSPPVQA-PFSPPASPPVSPSATPPSQA 695
Query: 111 PPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRAD 170
PP + PP P SP A M +A P +AP P LQ
Sbjct: 696 PPSLAAPPLQVP-----------PSPPASPPM--SPSATPPPQAP---PPLAAPPLQVPP 739
Query: 171 SALSSAAAGPRPMALRPPH--QALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPL 228
S +S P A PP L PPL PP PP LP A PP A PPL
Sbjct: 740 SPPASPPMSPS--ATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQAPPALATPPL 797
Query: 229 EEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIG------- 281
+ +P G +A + +A L + A P P V+
Sbjct: 798 QALPSPPASFPG---------QAPFSPSASLPMSPLATP-----PPQAPPVLAAPLLQVP 843
Query: 282 PSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPEL-LSLRPRPRPPRPEPPPGLMALEV 340
PS P + + P P P P V G P L L+L P P PP P L
Sbjct: 844 PSPPASPTLQAPRRPPTPGPDTSVSG-------PRLTLALAPGPPPPPSRSPSS--TLSG 894
Query: 341 PEPLGEDKK-KGKPEKLK 357
P+ G PE+L+
Sbjct: 895 PDLAGHSSSATSTPEELR 912
Score = 43.9 bits (102), Expect = 3e-04
Identities = 85/342 (24%), Positives = 111/342 (32%), Gaps = 40/342 (11%)
Query: 16 PVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAVPAVPTVPTVPTVEAM 75
P PG P G R AL VLGA AV P +
Sbjct: 17 PAARAPGLLTPRPPGSPRPPPPVTPAAL---RVLGAA-----GAVGRKPLAERAGGIGGA 68
Query: 76 QVP-AAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPGDRSHLD 134
+P +AP P + T + A+ PP P GPV PG S
Sbjct: 69 TIPESAPRAGPTRSAGTSSR-NPASRPPASGRGERAPPAKNTSP--GPVS-SPGRASGTT 124
Query: 135 SP----------EAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGPRPMA 184
P A E + +A AP+R+ + A R D++ P P
Sbjct: 125 RPGPLGQKGLRISAEETVARGKATEAPKRSALSAGA-------RRDTS-GPTPGTPSPAM 176
Query: 185 LRPPHQA--LVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLGLG 242
R A VG P P P P PP GP +A EP+ G
Sbjct: 177 ARRSRAAGTEVGLPRPAPSARPR--PP---TEGPRKSVSSASEHSTTEPSPAARRRPSAG 231
Query: 243 LGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPL 302
GL+ ++++A + A A G P PA PS P + P + P
Sbjct: 232 GGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPA--HPSQPKPKGLQALRPPQVTPPR 289
Query: 303 EVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPL 344
+ L PL L + P RP PPP A +P L
Sbjct: 290 KDAAPALGPLSSSPLATPSPSGTKARPVPPPDNAATPLPATL 331
Score = 42.7 bits (99), Expect = 7e-04
Identities = 58/230 (25%), Positives = 85/230 (36%), Gaps = 24/230 (10%)
Query: 130 RSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGPRPMALRPPH 189
R + P + + P A RP+ + + A +LSS+A L P
Sbjct: 199 RPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSAT-----PLSSPA 253
Query: 190 QALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKEKE 249
++ GP G P P A P + ALRPP P PR+ LG
Sbjct: 254 RS--GPSARGTPRAP------AHPSQPKPKGLQALRPPQVTP--PRK-DAAPALGPLSSS 302
Query: 250 EAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEP-LPLPLEVVRG- 307
+ +G + + V A PA + PS PLA +PL P P P L+ +
Sbjct: 303 PLATPSPSGTK--ARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSP 360
Query: 308 -LLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKL 356
PP + P ++ P PP + P ++VP L + P L
Sbjct: 361 PATPPSQAPPSMTTPPMQAPPSLQTIP---PIQVPHSLTSPSLQAPPSPL 407
Score = 37.4 bits (85), Expect = 0.030
Identities = 65/251 (25%), Positives = 85/251 (33%), Gaps = 31/251 (12%)
Query: 6 PAPGLPGAGGP---VVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPV---PGIPTA 59
P+ P P V P P A P + +A +V +P P P+A
Sbjct: 692 PSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSA 751
Query: 60 VPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPM--VGGP 117
P P VP + +QVP +P ++ Q A A PP+ + P
Sbjct: 752 TPP-PRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQ-------APPALATPPLQALPSP 803
Query: 118 P--FVGPVGFGPG---DRSHLDSPEARE----AMFLRRAAVAPQRAPILR-----PAFVP 163
P F G F P S L +P + A L + +P +P L+ P P
Sbjct: 804 PASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPTPGP 863
Query: 164 HVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARA-PGPPLGSMA 222
+ A GP P R P L GP L G P R P G A
Sbjct: 864 DTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAA 923
Query: 223 ALRPPLEEPAA 233
A PP E AA
Sbjct: 924 ASPPPDAELAA 934
Score = 31.6 bits (70), Expect = 1.7
Identities = 58/226 (25%), Positives = 76/226 (33%), Gaps = 29/226 (12%)
Query: 170 DSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLE 229
D+ A AG A R P G P PPG P PP+ A LG+ A+
Sbjct: 2 DNKRDKAKAGA---AARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVG---R 55
Query: 230 EPAAPRELGLGLGLGLKEKEEAVVAAAAGLEE---ASAAVAVGAG--GAPAGPAVIGPSL 284
+P A R G+G + A +AG AS A G G PA GP
Sbjct: 56 KPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVS 115
Query: 285 PLALAMPLPEPEPL-------PLPLEVVRGLL--PPLRIPELLSLRPRPRPPRPEPPPGL 335
A P PL V RG P R R P P P
Sbjct: 116 SPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPA 175
Query: 336 MA---------LEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPS 372
MA + +P P + + E ++ + +A+ S +PS
Sbjct: 176 MARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPS 221
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 65.1 bits (157), Expect = 1e-10
Identities = 85/328 (25%), Positives = 114/328 (34%), Gaps = 43/328 (13%)
Query: 49 LGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAAT 108
L P P P ++ +P+ P P +A +P ++ T+ + + A
Sbjct: 340 LAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQA-----THSFLPSPPLSPLATPPP 394
Query: 109 VVPPMVGGPPFVGPVG---FGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHV 165
PP + PP P P SP+A A+ AV +AP P P
Sbjct: 395 QAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNAL-----AVHLLQAPFSPPPSPP-- 447
Query: 166 LQRADSALSSAAAGPRPMALRPPHQA---LVGPPLPGPPGPPMMLPPMARAPGPPLGSMA 222
+ S A+ P + PP QA L PPL PP PP P A PP
Sbjct: 448 ---VQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPP 504
Query: 223 ALRPPLE----EPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPA 278
PPL+ P AP L L + A AS ++ A P P
Sbjct: 505 LAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPP 564
Query: 279 VIG-------PSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPEL-LSLRPRPRPPRPE 330
V+ PS P + + P P P P V G P L L+L P P PP
Sbjct: 565 VLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSG-------PRLTLALAPGPPPPPSR 617
Query: 331 PPPGLMALEVPEPLGEDKK-KGKPEKLK 357
P L P+ G PE+L+
Sbjct: 618 SPSS--TLSGPDLAGHSSSATSTPEELR 643
Score = 48.9 bits (115), Expect = 1e-05
Identities = 85/375 (22%), Positives = 118/375 (31%), Gaps = 63/375 (16%)
Query: 4 AGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAVPAV 63
AG GLP P P P KS + E + + P G PA
Sbjct: 183 AGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARR---RPSAGGGLQRPAS 239
Query: 64 PTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPV 123
++ + T + + P R + + +A V PP P +GP+
Sbjct: 240 RSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPL 299
Query: 124 GFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGPRPM 183
P L +P A+ +AP PA PH S+L+ A P P+
Sbjct: 300 SSSP-----LATPSPSAAL--------QSQAPPTLPA-TPH-----SSSLTCQLATPLPL 340
Query: 184 ALRPPHQALVGPPLPGPP-----------GPPMMLPPMARAPGPPLGSMAA--------- 223
A P LP PP G P + + P PPL +A
Sbjct: 341 APPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPAL 400
Query: 224 LRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPS 283
PPL+ P +P + A +A A+AV AP P PS
Sbjct: 401 ALPPLQAPPSP------------PASPPLSPLATPSPQAPNALAVHLLQAPFSPP---PS 445
Query: 284 LPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEP 343
P+ P P V PP + P L+ P PP P P + P P
Sbjct: 446 PPVQAPFSPPASPP------VSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPP 499
Query: 344 LGEDKKKGKPEKLKR 358
P +L +
Sbjct: 500 QAPPPLAAPPLQLAK 514
Score = 37.7 bits (86), Expect = 0.023
Identities = 77/288 (26%), Positives = 95/288 (32%), Gaps = 72/288 (25%)
Query: 49 LGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAAT 108
L AP +P + PA P P P+ A P AP P +A Q + +A A A
Sbjct: 474 LAAPPLQVPPSPPASP--PMSPS--ATPPPQAP---PPLAAPPLQLAKPPPQAPPALAT- 525
Query: 109 VVPPM--VGGPP--FVGPVGFGPG---DRSHLDSPEARE----AMFLRRAAVAPQRAPIL 157
PP+ + PP F G F P S L +P + A L + +P +P L
Sbjct: 526 --PPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTL 583
Query: 158 R-----PAFVPHVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPG------------- 199
+ P P + A GP P R P L GP L G
Sbjct: 584 QAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELR 643
Query: 200 -----PPGPPMMLPP------------MARAPGPPLGSMAALRPPLEEPAAPRELGLGLG 242
P G PP +R P PPL A PL P A G G
Sbjct: 644 GYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPA---TGPGSA 700
Query: 243 LGL------KEKEEAVVAAAA-------GLEEASAAVAVGAGGAPAGP 277
GL + E A A A G AA GAG + P
Sbjct: 701 DGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSP 748
Score = 31.6 bits (70), Expect = 1.7
Identities = 58/226 (25%), Positives = 76/226 (33%), Gaps = 29/226 (12%)
Query: 170 DSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLE 229
D+ A AG A R P G P PPG P PP+ A LG+ A+
Sbjct: 2 DNKRDKAKAGA---AARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVG---R 55
Query: 230 EPAAPRELGLGLGLGLKEKEEAVVAAAAGLEE---ASAAVAVGAG--GAPAGPAVIGPSL 284
+P A R G+G + A +AG AS A G G PA GP
Sbjct: 56 KPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVS 115
Query: 285 PLALAMPLPEPEPL-------PLPLEVVRGLL--PPLRIPELLSLRPRPRPPRPEPPPGL 335
A P PL V RG P R R P P P
Sbjct: 116 SPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPA 175
Query: 336 MA---------LEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPS 372
MA + +P P + + E ++ + +A+ S +PS
Sbjct: 176 MARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPS 221
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 63.9 bits (154), Expect = 3e-10
Identities = 84/325 (25%), Positives = 113/325 (34%), Gaps = 43/325 (13%)
Query: 52 PVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVP 111
P P P ++ +P+ P P +A +P ++ T+ + + A P
Sbjct: 304 PSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQA-----THSFLPSPPLSPLATPPPQAP 358
Query: 112 PMVGGPPFVGPVG---FGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQR 168
P + PP P P SP+A A+ AV +AP P P
Sbjct: 359 PALALPPLQAPPSPPASPPLSPLATPSPQAPNAL-----AVHLLQAPFSPPPSPP----- 408
Query: 169 ADSALSSAAAGPRPMALRPPHQA---LVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALR 225
+ S A+ P + PP QA L PPL PP PP P A PP
Sbjct: 409 VQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAA 468
Query: 226 PPLE----EPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIG 281
PPL+ P AP L L + A AS ++ A P P V+
Sbjct: 469 PPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLA 528
Query: 282 -------PSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPEL-LSLRPRPRPPRPEPPP 333
PS P + + P P P P V G P L L+L P P PP P
Sbjct: 529 APLLQVPPSPPASPTLQAPRRPPTPGPDTSVSG-------PRLTLALAPGPPPPPSRSPS 581
Query: 334 GLMALEVPEPLGEDKK-KGKPEKLK 357
L P+ G PE+L+
Sbjct: 582 S--TLSGPDLAGHSSSATSTPEELR 604
Score = 55.8 bits (133), Expect = 8e-08
Identities = 99/403 (24%), Positives = 129/403 (32%), Gaps = 79/403 (19%)
Query: 5 GPAPGLPGAGGPVVPGP----GAGIPGKSGEERLKEMEAE----MALFEQEVLGAPVPGI 56
GP A G PGP G I + R K EA ++ + P PG
Sbjct: 103 GPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGT 162
Query: 57 PTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATN----TYQQVQQTLEARAAAAATVVPP 112
P+ PA+ E AP RP T + + + AA P
Sbjct: 163 PS--PAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPS 220
Query: 113 MVGG-------------PPFVGPVGFGPGDR------SHLDSPEAREAMFLRRAAVAPQR 153
GG P P GP R +H P+ + LR V P R
Sbjct: 221 AGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPR 280
Query: 154 ---APILRPAFVPHVLQRADSALSSAAAGPRPMAL-----RPPHQAL--VGPP------- 196
AP L P + + SA S +A P L PP QA +G P
Sbjct: 281 KDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHS 340
Query: 197 -LPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAA 255
LP PP P+ PP PP ++ L+ P PA+P +
Sbjct: 341 FLPSPPLSPLATPP---PQAPPALALPPLQAPPSPPASP----------------PLSPL 381
Query: 256 AAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIP 315
A +A A+AV AP P PS P+ P P V PP + P
Sbjct: 382 ATPSPQAPNALAVHLLQAPFSPP---PSPPVQAPFSPPASPP------VSPSATPPSQAP 432
Query: 316 ELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKR 358
L+ P PP P P + P P P +L +
Sbjct: 433 PSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAK 475
Score = 37.7 bits (86), Expect = 0.023
Identities = 77/288 (26%), Positives = 95/288 (32%), Gaps = 72/288 (25%)
Query: 49 LGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAAT 108
L AP +P + PA P P P+ A P AP P +A Q + +A A A
Sbjct: 435 LAAPPLQVPPSPPASP--PMSPS--ATPPPQAP---PPLAAPPLQLAKPPPQAPPALAT- 486
Query: 109 VVPPM--VGGPP--FVGPVGFGPG---DRSHLDSPEARE----AMFLRRAAVAPQRAPIL 157
PP+ + PP F G F P S L +P + A L + +P +P L
Sbjct: 487 --PPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTL 544
Query: 158 R-----PAFVPHVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPG------------- 199
+ P P + A GP P R P L GP L G
Sbjct: 545 QAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELR 604
Query: 200 -----PPGPPMMLPP------------MARAPGPPLGSMAALRPPLEEPAAPRELGLGLG 242
P G PP +R P PPL A PL P A G G
Sbjct: 605 GYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWPPA---TGPGSA 661
Query: 243 LGL------KEKEEAVVAAAA-------GLEEASAAVAVGAGGAPAGP 277
GL + E A A A G AA GAG + P
Sbjct: 662 DGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSP 709
Score = 33.1 bits (74), Expect = 0.57
Identities = 59/223 (26%), Positives = 76/223 (34%), Gaps = 32/223 (14%)
Query: 170 DSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLE 229
D+ A AG A R P G P PPG P PP+ A LG+ A+
Sbjct: 2 DNKRDKAKAGA---AARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVG---R 55
Query: 230 EPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAG--GAPAGPAVIGPSLPLA 287
+P A R G+G G + E A AG S A G G PA GP
Sbjct: 56 KPLAERAGGIG-GATIPES-----APRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPG 109
Query: 288 LAMPLPEPEPL-------PLPLEVVRGLL--PPLRIPELLSLRPRPRPPRPEPPPGLMA- 337
A P PL V RG P R R P P P MA
Sbjct: 110 RASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMAR 169
Query: 338 --------LEVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPS 372
+ +P P + + E ++ + +A+ S +PS
Sbjct: 170 RSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPS 212
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 62.0 bits (149), Expect = 1e-09
Identities = 34/95 (35%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ + G EV+D+ L FS+F L KV+RD GK+KG+GFVS++ D +A+ EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251
Query: 443 NGKYVGSRPIKLRKSMWK-DRNLDVVRKKQKEKKK 476
NGK + + I + ++ K +R ++ RK ++ K++
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE 286
Score = 58.5 bits (140), Expect = 1e-08
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ +L + ++D+ L + FS F S AKV+ + G++KG+GFV F P + +A+ EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 443 NGKYVGSRPIKLRKSMWKD 461
NG+ VGS+P+ + + K+
Sbjct: 354 NGRIVGSKPLYVALAQRKE 372
Score = 53.1 bits (126), Expect = 5e-07
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ GDL ++V + +L FS L +V RD T ++ GY +V+F+ P+D RA+ M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 443 NGKYVGSRPIKLRKSMWKDRN 463
N + +PI++ MW R+
Sbjct: 73 NFDVIKGKPIRI---MWSQRD 90
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 347 DKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPS 406
D KGKP ++ S DPSL + + +F +L +++ L FS F +
Sbjct: 75 DVIKGKPIRIMW--------SQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSAFGN 124
Query: 407 FLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPI 452
L KV+ D+ +KGY FV F+ +A+ +MNG + R +
Sbjct: 125 ILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 168
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 62.0 bits (149), Expect = 1e-09
Identities = 34/95 (35%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ + G EV+D+ L FS+F L KV+RD GK+KG+GFVS++ D +A+ EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251
Query: 443 NGKYVGSRPIKLRKSMWK-DRNLDVVRKKQKEKKK 476
NGK + + I + ++ K +R ++ RK ++ K++
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE 286
Score = 58.5 bits (140), Expect = 1e-08
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ +L + ++D+ L + FS F S AKV+ + G++KG+GFV F P + +A+ EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 443 NGKYVGSRPIKLRKSMWKD 461
NG+ VGS+P+ + + K+
Sbjct: 354 NGRIVGSKPLYVALAQRKE 372
Score = 53.1 bits (126), Expect = 5e-07
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ GDL ++V + +L FS L +V RD T ++ GY +V+F+ P+D RA+ M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 443 NGKYVGSRPIKLRKSMWKDRN 463
N + +PI++ MW R+
Sbjct: 73 NFDVIKGKPIRI---MWSQRD 90
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 347 DKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPS 406
D KGKP ++ S DPSL + + +F +L +++ L FS F +
Sbjct: 75 DVIKGKPIRIMW--------SQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSAFGN 124
Query: 407 FLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPI 452
L KV+ D+ +KGY FV F+ +A+ +MNG + R +
Sbjct: 125 ILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 168
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 62.0 bits (149), Expect = 1e-09
Identities = 34/95 (35%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ + G EV+D+ L FS+F L KV+RD GK+KG+GFVS++ D +A+ EM
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEM 251
Query: 443 NGKYVGSRPIKLRKSMWK-DRNLDVVRKKQKEKKK 476
NGK + + I + ++ K +R ++ RK ++ K++
Sbjct: 252 NGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQE 286
Score = 58.5 bits (140), Expect = 1e-08
Identities = 28/79 (35%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ +L + ++D+ L + FS F S AKV+ + G++KG+GFV F P + +A+ EM
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 443 NGKYVGSRPIKLRKSMWKD 461
NG+ VGS+P+ + + K+
Sbjct: 354 NGRIVGSKPLYVALAQRKE 372
Score = 53.1 bits (126), Expect = 5e-07
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ GDL ++V + +L FS L +V RD T ++ GY +V+F+ P+D RA+ M
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 443 NGKYVGSRPIKLRKSMWKDRN 463
N + +PI++ MW R+
Sbjct: 73 NFDVIKGKPIRI---MWSQRD 90
Score = 41.6 bits (96), Expect = 0.002
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 347 DKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPS 406
D KGKP ++ S DPSL + + +F +L +++ L FS F +
Sbjct: 75 DVIKGKPIRIMW--------SQRDPSLRKSGVGN--VFIKNLDKSIDNKALYDTFSAFGN 124
Query: 407 FLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPI 452
L KV+ D+ +KGY FV F+ +A+ +MNG + R +
Sbjct: 125 ILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKV 168
>gi|149773456 hypothetical protein LOC643314 [Homo sapiens]
Length = 1427
Score = 61.2 bits (147), Expect = 2e-09
Identities = 104/385 (27%), Positives = 132/385 (34%), Gaps = 65/385 (16%)
Query: 15 GPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAVPAVPTVPT--VPTV 72
GPV P P + A + + E +P +PT P PT P VPT
Sbjct: 973 GPVTPATTVHAPEEPDT-------AAVRVSTPEEPASPAAAVPT--PEEPTSPAAAVPTP 1023
Query: 73 EAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGP-GDRS 131
E PAA V P T+ V E + AAA P P P P +
Sbjct: 1024 EEPTSPAAAVPPPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAAAVPTPEEPTSPAA 1083
Query: 132 HLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGPRPMALRPPHQA 191
+ +PE + AAV P A VP + S AAA P P P A
Sbjct: 1084 AVPTPEEPTS---PAAAVPTPEEPTSPAAAVP----TPEEPASPAAAVPTPEEPASPAAA 1136
Query: 192 LVGPPLPGPPGPPMMLP------------------PMARAPGP-PLGSMAALRPPLEEPA 232
+ P P P P + P P A P P S AA+ LEEP
Sbjct: 1137 VPTPEEPAFPAPAVPTPEESASAAVAVPTPEESASPAAAVPTPAESASFAAVVATLEEPT 1196
Query: 233 APR---ELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSL----- 284
+P + L+E + E AS A AV P PA P+L
Sbjct: 1197 SPAASVPTPAAMVATLEEFTSPAASVPTSEEPASLAAAVSNPEEPTSPAAAVPTLEEPTS 1256
Query: 285 -------PLALAMP---LPEPEPLPLPLEVVRGLLPP------LRIPELLSLRPRPRPPR 328
P L+ P +P PE P V L P + PE+ ++ P P
Sbjct: 1257 SAAAVLTPEELSSPAASVPTPEEPASPAAAVSNLEEPASPAAAVPTPEVAAI-PAASVPT 1315
Query: 329 PEPPPGLMALEVPEPLGEDKKKGKP 353
PE P + A VP P+ E G P
Sbjct: 1316 PE-VPAIPAAAVP-PMEEVSPIGVP 1338
Score = 48.5 bits (114), Expect = 1e-05
Identities = 78/285 (27%), Positives = 108/285 (37%), Gaps = 37/285 (12%)
Query: 2 AGAGPAPGLPGAGGPVVPGPGA-GIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAV 60
A A P P P + VP P P + + A+ E P P +PT
Sbjct: 1095 AAAVPTPEEPTSPAAAVPTPEEPASPAAAVPTPEEPASPAAAVPTPEEPAFPAPAVPTPE 1154
Query: 61 PAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPP--MVGG-P 117
+ VPT E PAA V P + ++ V TLE + AA+V P MV
Sbjct: 1155 ESASAAVAVPTPEESASPAAAVPTP-AESASFAAVVATLEEPTSPAASVPTPAAMVATLE 1213
Query: 118 PFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSAL---- 173
F P P + E L AAV+ P A VP + + SA
Sbjct: 1214 EFTSPAA---------SVPTSEEPASL-AAAVSNPEEPTSPAAAVPTLEEPTSSAAAVLT 1263
Query: 174 -----SSAAAGPRPMALRPPHQAL-----VGPPLPGPPGPPMMLPPMARAPGPPLGSM-A 222
S AA+ P P P A+ P P P + P A P P + ++ A
Sbjct: 1264 PEELSSPAASVPTPEEPASPAAAVSNLEEPASPAAAVPTPEVAAIPAASVPTPEVPAIPA 1323
Query: 223 ALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAG---LEEASA 264
A PP+EE + +G+ LG+ ++V + G LEEAS+
Sbjct: 1324 AAVPPMEEVS---PIGVPF-LGVSAHTDSVPISEEGTPVLEEASS 1364
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 60.8 bits (146), Expect = 3e-09
Identities = 96/334 (28%), Positives = 131/334 (39%), Gaps = 33/334 (9%)
Query: 56 IPTAVPA-VPTVPTVPTVEAMQVPA-APVIRPIIATNTYQQVQQTLEARA---AAAATVV 110
+P +VPA VP VP A VPA +P + P+ A TL + + + +A+V+
Sbjct: 223 VPLSVPAPVPHSGLVPVQVATSVPAPSPPLAPVPALAPAPPSVPTLISDSNPLSVSASVL 282
Query: 111 PPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRAD 170
P+ P GPV + L P + + L +A V P AP L A VP
Sbjct: 283 VPVPASAPPSGPVPLSAPAPAPLSVPVSAPPLALIQAPVPPS-APTLVLAPVP------T 335
Query: 171 SALSSAAAGPRPMALRPPHQALVGP-PLPGPPGPPMMLPPMARAPGP-----PLGSMAAL 224
L+ A P A PP + P P GPP P ++P A P P P+ + A
Sbjct: 336 PVLAPMPASTPPAAPAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPVPAPTPAPIFTPAPT 395
Query: 225 RPPLEEPAA-PRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPS 283
P PAA P + L V AA +A A V P V+ PS
Sbjct: 396 PMPAATPAAIPTSAPIPASFSLSR----VCFPAA---QAPAMQKVPLSFQPG--TVLTPS 446
Query: 284 LPLALAMPLPEPEPLPL-PLEVVRGLLPPLRIPELLS-LRPRPRP---PRPEPPPGLMAL 338
PL P +PL + L G+ L +P L S L+ R P PE A
Sbjct: 447 QPLVYIPPPSCGQPLSVATLPTTLGVSSTLTLPVLPSYLQDRCLPGVLASPELRSYPYAF 506
Query: 339 EVPEPLGEDKKKGKPEKLKRCIRTAAGSSWEDPS 372
V PL D K E + + +GS+ P+
Sbjct: 507 SVARPLTSDSKLVSLEVNRLPCTSPSGSTTTQPA 540
Score = 41.2 bits (95), Expect = 0.002
Identities = 55/209 (26%), Positives = 74/209 (35%), Gaps = 38/209 (18%)
Query: 150 APQRAPILRPA----FVPHVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPM 205
+P API PA VPH + A S P P+ PH LV P+
Sbjct: 197 SPLPAPICPPAPGSASVPHSVPDAFQVPLSV---PAPV----PHSGLV----------PV 239
Query: 206 MLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLE----- 260
+ AP PPL + AL P P+ P + L + V A+A
Sbjct: 240 QVATSVPAPSPPLAPVPALAPA--PPSVPTLISDSNPLSVSASVLVPVPASAPPSGPVPL 297
Query: 261 --EASAAVAVGAGGAPAG--PAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPE 316
A A ++V P A + PS P + P+P P P+P P +P
Sbjct: 298 SAPAPAPLSVPVSAPPLALIQAPVPPSAPTLVLAPVPTPVLAPMPASTPPAAPAPPSVP- 356
Query: 317 LLSLRPRPRPPR-PEPPPGLMALEVPEPL 344
P P P P P L+ P P+
Sbjct: 357 ----MPTPTPSSGPPSTPTLIPAFAPTPV 381
Score = 35.4 bits (80), Expect = 0.12
Identities = 55/204 (26%), Positives = 71/204 (34%), Gaps = 37/204 (18%)
Query: 49 LGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAAT 108
L PV P A+ P P+ PT+ VP PV+ P+ A+ AA A
Sbjct: 305 LSVPVSAPPLALIQAPVPPSAPTLVLAPVP-TPVLAPMPASTP-----------PAAPAP 352
Query: 109 VVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQR 168
PM P GP S F AP API PA P +
Sbjct: 353 PSVPMPTPTPSSGP-----------PSTPTLIPAFAPTPVPAPTPAPIFTPAPTP-MPAA 400
Query: 169 ADSALSSAAAGPRPMALR----PPHQ--ALVGPPLPGPPGPPMM-LPPMARAPGPPLGSM 221
+A+ ++A P +L P Q A+ PL PG + P+ P P G
Sbjct: 401 TPAAIPTSAPIPASFSLSRVCFPAAQAPAMQKVPLSFQPGTVLTPSQPLVYIPPPSCGQ- 459
Query: 222 AALRPPLEEPAAPRELGLGLGLGL 245
PL P LG+ L L
Sbjct: 460 -----PLSVATLPTTLGVSSTLTL 478
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 60.5 bits (145), Expect = 3e-09
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 382 RIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMRE 441
++F G L E N+ L F ++ ++ +I+D+ T K++G+ FV+F+ P+D A R+
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 442 MNGKYVGSRPIKLRKS 457
MNGK + + IK+ ++
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 60.5 bits (145), Expect = 3e-09
Identities = 25/76 (32%), Positives = 47/76 (61%)
Query: 382 RIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMRE 441
++F G L E N+ L F ++ ++ +I+D+ T K++G+ FV+F+ P+D A R+
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 442 MNGKYVGSRPIKLRKS 457
MNGK + + IK+ ++
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 60.1 bits (144), Expect = 4e-09
Identities = 61/213 (28%), Positives = 79/213 (37%), Gaps = 46/213 (21%)
Query: 130 RSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGPRPMALRPPH 189
R H PE A + + QRA +LR ++ + R + + G P A PP
Sbjct: 60 RRHGPEPERTRAELEK---LIQQRA-VLRVSYKGSISYRNAARVQPPRRGATPPA--PPR 113
Query: 190 Q---------ALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLG 240
A PP P PP PP + A A P + AA PP PA P
Sbjct: 114 APRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQP------ 167
Query: 241 LGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPL 300
G + + A +AA A AVA PAGP P A PLP P P
Sbjct: 168 ---GPRAQRAAPLAAPPPAPAAPPAVA-----PPAGPRRAPPPAVAAREPPLPPPPQPPA 219
Query: 301 PLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPP 333
P + + +P PP+P+PPP
Sbjct: 220 PPQ-----------------QQQPPPPQPQPPP 235
Score = 58.9 bits (141), Expect = 1e-08
Identities = 59/189 (31%), Positives = 69/189 (36%), Gaps = 37/189 (19%)
Query: 191 ALVGPPLPG--PPGPPMMLPPMARAP-GPPLGSMAALRPPLEEPAAPRELGLGLGLGLKE 247
A V PP G PP PP RAP G P + AA PP P P
Sbjct: 97 ARVQPPRRGATPPAPP-------RAPRGAPAAAAAAAPPPTPAPPPP------------- 136
Query: 248 KEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRG 307
A VAAAA AA A GPA GP A PL P P P V
Sbjct: 137 --PAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAA--PLAAPPPAPAAPPAVAP 192
Query: 308 LLPPLRI-PELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKG---------KPEKLK 357
P R P ++ R P PP P+PP + P P + +G +P L+
Sbjct: 193 PAGPRRAPPPAVAAREPPLPPPPQPPAPPQQQQPPPPQPQPPPEGGAVRAGGAARPVSLR 252
Query: 358 RCIRTAAGS 366
+R GS
Sbjct: 253 EVVRYLGGS 261
Score = 51.6 bits (122), Expect = 2e-06
Identities = 54/169 (31%), Positives = 57/169 (33%), Gaps = 57/169 (33%)
Query: 50 GAPVPGIPTAVPAVPTVPTVPTVEAMQVPA-APVIRPIIATNTYQQVQQTLEARAAAAAT 108
GAP A P P P P A PA AP RAAAAA
Sbjct: 117 GAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAP--------------------RAAAAAA 156
Query: 109 VVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQR 168
PP G PG R+ +P A AP AP PA P
Sbjct: 157 TAPPSPGPAQ--------PGPRAQRAAPLA-----------APPPAPAAPPAVAP----- 192
Query: 169 ADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPP 217
AGPR PP A PPLP PP PP PP + P PP
Sbjct: 193 --------PAGPR--RAPPPAVAAREPPLPPPPQPP--APPQQQQPPPP 229
Score = 50.1 bits (118), Expect = 5e-06
Identities = 56/185 (30%), Positives = 60/185 (32%), Gaps = 58/185 (31%)
Query: 54 PGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPM 113
P P PA P A P APV A RAAAAA PP
Sbjct: 112 PRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPAR----------APRAAAAAATAPPS 161
Query: 114 VGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSAL 173
G PG R+ +P A AP AP PA P
Sbjct: 162 PGPAQ--------PGPRAQRAAPLA-----------APPPAPAAPPAVAP---------- 192
Query: 174 SSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAA 233
AGPR PP A PPLP PP PP PP + P PP +P
Sbjct: 193 ---PAGPRRAP--PPAVAAREPPLPPPPQPPA--PPQQQQPPPP------------QPQP 233
Query: 234 PRELG 238
P E G
Sbjct: 234 PPEGG 238
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 59.7 bits (143), Expect = 6e-09
Identities = 93/360 (25%), Positives = 127/360 (35%), Gaps = 40/360 (11%)
Query: 16 PVVPGP---GAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAVPAVPTVPTVPTV 72
P PGP A GK+G + ++EA + +E+ P P P PT P
Sbjct: 406 PKEPGPLQCEAKPLGKAGVQLEPQLEAPL---NEEMPLLPPPEESPLSPPPEESPTSPPP 462
Query: 73 EAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGFGPGDRSH 132
EA ++ P P + + LE + P+ PP P F P + S
Sbjct: 463 EASRLSPPPEELPASPLPEALHLSRPLEESPLSPPPEESPL-SPPPESSP--FSPLEESP 519
Query: 133 LDSPE-AREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGPRPMALR---PP 188
L PE + + L P A L P F L L ++ P P A R PP
Sbjct: 520 LSPPEESPPSPALETPLSPPPEASPLSPPFEESPLSPPPEELPTS---PPPEASRLSPPP 576
Query: 189 HQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKEK 248
++ + PP P PM PP A PP PP E P +P L ++
Sbjct: 577 EESPMSPP---PEESPMSPPPEASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPPEDS 633
Query: 249 ------EEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPL 302
EE+ ++ + S V P + + P PE P P
Sbjct: 634 PMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPP---------PEESPTSPPP 684
Query: 303 EVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLKRCIRT 362
E R PP P S P P P P LM+L PL E PE+ + C R+
Sbjct: 685 EASRLSPPPEDSP--TSPPPEDSPASPPPEDSLMSL----PLEESPLLPLPEEPQLCPRS 738
Score = 44.3 bits (103), Expect = 2e-04
Identities = 80/346 (23%), Positives = 114/346 (32%), Gaps = 90/346 (26%)
Query: 3 GAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAVPA 62
GA P + GA PGAG PG+ PG P P+
Sbjct: 2204 GAPAQPPMLGASSR----PGAGQPGE--------------------FHTTPPGTPRHQPS 2239
Query: 63 VPTV---PTVPTVEAMQVPAAPVI------RPIIATNTYQQVQQTLEARAAAAATVVPPM 113
P P P+++ + VP +P + P+++ + + ++ LE + P
Sbjct: 2240 TPDPFLKPRCPSLDNLAVPESPGVGGGKASEPLLSPPPFGESRKALEVKKEELGASSPSY 2299
Query: 114 VGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSAL 173
GPP +G V P +HL E + + A + P RA + P
Sbjct: 2300 --GPPNLGFVD-SPSSGTHLGGLELKTPDVFK-APLTP-RASQVEP-------------- 2340
Query: 174 SSAAAGPRPMALRPPHQALVGPP-------LPGPPGPPMMLPPMARAPGPPLGSMAALRP 226
S G RP PP QAL P PG P PP+ P PP P
Sbjct: 2341 QSPGLGLRPQE-PPPAQALAPSPPSHPDIFRPGSYTDPYAQPPLTPRPQPPPPESCCALP 2399
Query: 227 PLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPL 286
P P+ P + V A+ + +S + P PS P+
Sbjct: 2400 PRSLPSDP---------------FSRVPASPQSQSSSQSPLT---PRPLSAEAFCPS-PV 2440
Query: 287 ALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPP 332
P+P PP R P +PPRP+PP
Sbjct: 2441 TPRFQSPDPYS-----------RPPSRPQSRDPFAPLHKPPRPQPP 2475
Score = 35.8 bits (81), Expect = 0.088
Identities = 74/351 (21%), Positives = 116/351 (33%), Gaps = 60/351 (17%)
Query: 44 FEQEVLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPA---APVIRPIIATNTYQQVQQTLE 100
FE+ L P +PT+ P + + P E+ P +P+ P A+ + +++
Sbjct: 549 FEESPLSPPPEELPTSPPPEASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPL 608
Query: 101 ARAAAAATVVPP----MVGGPPFVGPVGFGPGDRSHLDSPEAREAMFL---RRAAVAPQR 153
+ + + PP + PP P+ P + PE L R + P+
Sbjct: 609 SPPPEESPLSPPPEASRLSPPPEDSPMSPPPEESPMSPPPEVSRLSPLPVVSRLSPPPEE 668
Query: 154 APILRPAFVPHVLQRADSALSSAAAGPRPMALR---PPHQALVGPPLPGPPGPPMMLPPM 210
+P+ P + P P A R PP + PP P P PP
Sbjct: 669 SPLSPPP-------------EESPTSPPPEASRLSPPPEDSPTSPP---PEDSPASPPPE 712
Query: 211 ARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKE------KEEAVVAAAA-----GL 259
PL L P E PR G L +E EE ++ A
Sbjct: 713 DSLMSLPLEESPLLPLPEEPQLCPRSEGPHLSPRPEEPHLSPRPEEPHLSPQAEEPHLSP 772
Query: 260 EEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLS 319
+ + P GP L P+PE L L + L P +PE
Sbjct: 773 QPEEPCLCAVPEEPHLSPQAEGPHLS-------PQPEELHLSPQTEEPHLSP--VPEEPC 823
Query: 320 LRPRPRPPR-----------PEPPPGLMALEVPEPLGEDKKKGKPEKLKRC 359
L P+P P P ++ E+ +P + + PE+ +C
Sbjct: 824 LSPQPEESHLSPQSEEPCLSPRPEESHLSPELEKPPLSPRPEKPPEEPGQC 874
Score = 33.9 bits (76), Expect = 0.34
Identities = 59/221 (26%), Positives = 76/221 (34%), Gaps = 55/221 (24%)
Query: 135 SPEAREAMFLRRAAVAPQRAPILRPAF-------VPHVLQRADSALSSAA-AGPRPMALR 186
S ++ M L R A +AP L+ A + V ++A+S ++ G
Sbjct: 2039 SSRCKQIMKLWRKVPAADKAPYLQKAKDNRAAHRINKVQKQAESQINKQTKVGDIARKTD 2098
Query: 187 PPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLK 246
P L PP PG G P P A AP +GS P P
Sbjct: 2099 RPALHLRIPPQPGALGSP----PPAAAPTIFIGS----------PTTP------------ 2132
Query: 247 EKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVR 306
AGL + A G PAG +V GP P L + LP P +P +
Sbjct: 2133 ----------AGLSTS----ADGFLKPPAG-SVPGPDSPGELFLKLPPQVPAQVPSQDPF 2177
Query: 307 GLLPPLRIPELLSLRPRPRPPRPEP------PPGLMALEVP 341
GL P + P PP P P PP L A P
Sbjct: 2178 GLAPAYPLEPRFPTAPPTYPPYPSPTGAPAQPPMLGASSRP 2218
Score = 33.1 bits (74), Expect = 0.57
Identities = 39/137 (28%), Positives = 51/137 (37%), Gaps = 25/137 (18%)
Query: 118 PFVG-PVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPI--LRPAFVPHVLQRADSALS 174
P +G P PG+ PE +++PQ P L P P + A ALS
Sbjct: 893 PLLGEPALSEPGEPPLSPLPEELPLSPSGEPSLSPQLMPPDPLPPPLSPIITAAAPPALS 952
Query: 175 SAAAGPRPMALR---PPHQALVGPPLPGP-------------PGPPMMLPPMARAPGPPL 218
P + P L P L P P PPM+LPP +PG P+
Sbjct: 953 PLGELEYPFGAKGDSDPESPLAAPILETPISPPPEANCTDPEPVPPMILPP---SPGSPV 1009
Query: 219 GSMAALRPPLEEPAAPR 235
G + P L EP P+
Sbjct: 1010 GPAS---PILMEPLPPQ 1023
Score = 33.1 bits (74), Expect = 0.57
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 24/117 (20%)
Query: 210 MARAPGPPLGSMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASA----- 264
+A PG P PL+ ++P LG L L KE+ A ++ E +
Sbjct: 3995 VALGPGMPA-------KPLQHFSSPGALGPTLLLTGKEQNTVDPAVSSEATEGPSTHQGG 4047
Query: 265 --AVAVGAGGAPAGPAVIGPSLP----LALAMPLPEPEPLPLPLEVVRGLLPPLRIP 315
A+ P + PSL L L P P+P+P L L+ PPLR+P
Sbjct: 4048 PLAIGTTPESMATEPGEVKPSLSGDSQLLLVQPQPQPQPSSLQLQ------PPLRLP 4098
Score = 31.6 bits (70), Expect = 1.7
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 152 QRAPILRPAFVPHVLQRADSALSSAAAGPRPMALRPP--HQALVGPPL-PGPP-GPPMML 207
Q+ +L + Q+ ++ A GP+P L PP HQ L+ L P PP GP ML
Sbjct: 3743 QQQHLLGQVAIQQQQQQGPGVQTNQALGPKPQGLMPPSSHQGLLVQQLSPQPPQGPQGML 3802
Query: 208 PP 209
P
Sbjct: 3803 GP 3804
Score = 31.6 bits (70), Expect = 1.7
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 198 PGPPGPPMM-LPPMARAPGPPLGSMAALRPPL--EEPAAPREL 237
P P GPP + PP A + GP LG + PP +EP P +L
Sbjct: 4281 PRPQGPPRLPAPPGALSTGPVLGPVHPTPPPSSPQEPKRPSQL 4323
Score = 31.2 bits (69), Expect = 2.2
Identities = 64/229 (27%), Positives = 83/229 (36%), Gaps = 38/229 (16%)
Query: 118 PFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILR-PAFVPHVLQRADSALSSA 176
P + P GP HL SP+ E + L P +P+ P P Q +S LS
Sbjct: 786 PHLSPQAEGP----HL-SPQPEE-LHLSPQTEEPHLSPVPEEPCLSP---QPEESHLSPQ 836
Query: 177 AAGPRPMALRP-PHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPR 235
+ P L P P ++ + P L PP P P P L PP EP+
Sbjct: 837 SEEP---CLSPRPEESHLSPELEKPPLSPRPEKPPEEPGQCPAPEELPLFPPPGEPSLSP 893
Query: 236 ELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPLPEP 295
LG L E E ++ EE +P+G + P L MP P
Sbjct: 894 LLG---EPALSEPGEPPLSPLP--EELPL--------SPSGEPSLSPQL-----MP---P 932
Query: 296 EPLPLPLE-VVRGLLPPLRIP--ELLSLRPRPRPPRPEPPPGLMALEVP 341
+PLP PL ++ PP P EL PE P LE P
Sbjct: 933 DPLPPPLSPIITAAAPPALSPLGELEYPFGAKGDSDPESPLAAPILETP 981
Score = 30.4 bits (67), Expect = 3.7
Identities = 36/124 (29%), Positives = 49/124 (39%), Gaps = 23/124 (18%)
Query: 226 PPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAG-LEEASAAVAVGAGGAPAGPAVIGPSL 284
PP +EP GL LG + + G L+E +GAG P GP + P+
Sbjct: 4241 PPYQEPGTQTSPLQGL-LGCQPQLGGFPGPQTGPLQE------LGAGPRPQGPPRL-PAP 4292
Query: 285 PLALAM--------PLPEPEPLPLPLEVVRGLLPPLRIPELLSL------RPRPRPPRPE 330
P AL+ P P P P + P ++P L P+P+ P E
Sbjct: 4293 PGALSTGPVLGPVHPTPPPSSPQEPKRPSQLPSPSSQLPTEAQLPPTHPGTPKPQGPTLE 4352
Query: 331 PPPG 334
PPPG
Sbjct: 4353 PPPG 4356
Score = 29.6 bits (65), Expect = 6.3
Identities = 37/126 (29%), Positives = 44/126 (34%), Gaps = 24/126 (19%)
Query: 190 QALVGPPLPGPPGPPMMLPPMARAPGPPLGS-MAALRPPLE------------------E 230
+AL+ PGP GP PP A A P L S + ++P +E E
Sbjct: 3083 EALLRGVEPGPLGPEERPPPAADASEPRLASVLPEVKPKVEEGGRHPSPCQFTIATPKVE 3142
Query: 231 PA-APRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALA 289
PA A LGLGL G G +S A A G GP L
Sbjct: 3143 PAPAANSLGLGLKPGQSMMGSRDTRMGTGPFSSSGHTAEKASFGATG----GPPAHLLTP 3198
Query: 290 MPLPEP 295
PL P
Sbjct: 3199 SPLSGP 3204
Score = 29.3 bits (64), Expect = 8.3
Identities = 50/204 (24%), Positives = 65/204 (31%), Gaps = 39/204 (19%)
Query: 163 PHVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMA 222
P V + S A P+ R P PP P P G P P + + P G
Sbjct: 2165 PQVPAQVPSQDPFGLAPAYPLEPRFPTAPPTYPPYPSPTGAPAQPPMLGASSRPGAGQPG 2224
Query: 223 ALR----------------------PPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLE 260
P L+ A P G+G G K E + G
Sbjct: 2225 EFHTTPPGTPRHQPSTPDPFLKPRCPSLDNLAVPESPGVG---GGKASEPLLSPPPFGES 2281
Query: 261 EASAAV---AVGAGGAPAGPAVIG----PSLPLAL-AMPLPEPEPLPLPLEVVRGLLPPL 312
+ V +GA GP +G PS L + L P+ PL + P
Sbjct: 2282 RKALEVKKEELGASSPSYGPPNLGFVDSPSSGTHLGGLELKTPDVFKAPLTPRASQVEP- 2340
Query: 313 RIPELLSLRPRPRPP----RPEPP 332
+ P L LRP+ PP P PP
Sbjct: 2341 QSPG-LGLRPQEPPPAQALAPSPP 2363
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 59.7 bits (143), Expect = 6e-09
Identities = 85/339 (25%), Positives = 123/339 (36%), Gaps = 54/339 (15%)
Query: 30 GEERLKEMEAEMALFEQEVLGAPVPGIPTAVPAVP--TVPTVPTVEAMQVPAAPVIRPII 87
G+ L A +AL + AP PG PT V +P T T P + +P A P
Sbjct: 1246 GQHHLISQPAHVALIQAV---APTPG-PTPVSVLPSSTPSTTPAPTGLSLPLAANQVPPT 1301
Query: 88 ATNTYQQVQQTLEARAAAAATVVPPMVGGP--PFVG-PVGFGPGDRSHLDSPEAREAMFL 144
N V+ + T VPP+ P P G P P R L L
Sbjct: 1302 MVNNTGVVKIVVRQAPRDGLTPVPPLAPAPRPPSSGLPAVLNP--RPTLTPGR------L 1353
Query: 145 RRAAVAPQRAPILRPAFVPHVLQRADSA---LSSAAAGPRPMALRPPHQALVGPPLPGPP 201
+ RAP+ P V +L+ S +S++A G P+ + P V LPGP
Sbjct: 1354 PTPTLGTARAPMPTPTLVRPLLKLVHSPSPEVSASAPGAAPLTISSPLH--VPSSLPGPA 1411
Query: 202 GPPMMLP-------PMARAPGPPLGSMAALRPPLEEPA---APRELGLGLGLGLKEKEEA 251
PM +P P++ PL S + P PA AP + + L + A
Sbjct: 1412 SSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPA 1471
Query: 252 VVA-------------------AAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALAMPL 292
++ A +G +++A+ +G AP+ + P PL LA
Sbjct: 1472 LLTSVTPPLAPVVPAAPGPPSLAPSGASPSASALTLGLATAPSLSSSQTPGHPLLLA--- 1528
Query: 293 PEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEP 331
P +P V P+ +P P P P P P
Sbjct: 1529 PTSSHVPGLNSTVAPACSPVLVPASALASPFPSAPNPAP 1567
Score = 57.8 bits (138), Expect = 2e-08
Identities = 97/421 (23%), Positives = 147/421 (34%), Gaps = 90/421 (21%)
Query: 3 GAGPAPGLPGA---GGPVVPGPGAG-IPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPT 58
G AP L + G P++ P + +PG + L L +P P P
Sbjct: 1508 GLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVA---PACSPVLVPASALASPFPSAPN 1564
Query: 59 AVPAVPTV--PTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGG 116
PA ++ P +A+ P AP+ P Q + A + A P++
Sbjct: 1565 PAPAQASLLAPASSASQALATPLAPMAAP----------QTAILAPSPAPPLAPLPVLAP 1614
Query: 117 PPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADSALSSA 176
P PV + +P + L A+ P P+L P+ +L + +
Sbjct: 1615 SPGAAPVLASSQTPVPVMAPSSTPGTSLASASPVPAPTPVLAPSSTQTMLPAPVPSPLPS 1674
Query: 177 AAGPRPMALRPPHQALVGPPLPG---------PPGP---------------PMMLPPMAR 212
A + +AL P +G P P GP P ++
Sbjct: 1675 PASTQTLALAPALAPTLGGSSPSQTLSLGTGNPQGPFPTQTLSLTPASSLVPTPAQTLSL 1734
Query: 213 APGPPLGSMAALR----PPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAV 268
APGPPLG L PPL PA+P +G +A A+ A +V
Sbjct: 1735 APGPPLGPTQTLSLAPAPPLA-PASP--------VGPAPAHTLTLAPASSSASLLAPASV 1785
Query: 269 GAGG-APAGPAVIGPSLPLALAM-------PLPEPEPL--------PLPLEVVRGLLPPL 312
+PA +GP+ LA+ P + L PLP+ +V L
Sbjct: 1786 QTLTLSPAPVPTLGPAAAQTLALAPASTQSPASQASSLVVSASGAAPLPVTMVSRLPVSK 1845
Query: 313 RIPELLSLR---------------PRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPEKLK 357
P+ L+LR PRPR P PP L + L E +K+ + E+L+
Sbjct: 1846 DEPDTLTLRSGPPSPPSTATSFGGPRPRRQPPPPPRSPFYL---DSLEEKRKRQRSERLE 1902
Query: 358 R 358
R
Sbjct: 1903 R 1903
Score = 51.2 bits (121), Expect = 2e-06
Identities = 89/341 (26%), Positives = 117/341 (34%), Gaps = 73/341 (21%)
Query: 11 PGAGGPVVPGP---GAGIPGKSGEERLKEMEAEMALFEQEVLGAPVPGIPTAVPAVPTVP 67
PGA + P + +PG + + M + L +PV +VP ++P
Sbjct: 1390 PGAAPLTISSPLHVPSSLPGPAS--------SPMPIPNSSPLASPVSST-VSVPLSSSLP 1440
Query: 68 -TVPTVEAMQVPA-APVIRPIIATNTYQQVQQTLEARAAAAATVVPPMVGGPPFVGPVGF 125
+VPT + PA AP+ PI A T L V P GPP + P G
Sbjct: 1441 ISVPTT--LPAPASAPLTIPISAPLTVSASGPALLTSVTPPLAPVVPAAPGPPSLAPSGA 1498
Query: 126 GPGDRS---------HLDSPEAREAMFL----------RRAAVAPQRAPILRPAFVPHVL 166
P + L S + L + VAP +P+L PA
Sbjct: 1499 SPSASALTLGLATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPA------ 1552
Query: 167 QRADSALSSAAAGPRPMALRP-PHQALVGPPLP------GPPGPPMMLPP---MARAPGP 216
SA A P P A P P QA + P P PM P +A +P P
Sbjct: 1553 --------SALASPFPSAPNPAPAQASLLAPASSASQALATPLAPMAAPQTAILAPSPAP 1604
Query: 217 PLGSMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAG 276
PL + L P P A L + V A + S A A PA
Sbjct: 1605 PLAPLPVLAP---SPGAAPVLA-------SSQTPVPVMAPSSTPGTSLA---SASPVPAP 1651
Query: 277 PAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPEL 317
V+ PS + +P P P PLP P L P P L
Sbjct: 1652 TPVLAPSSTQTM-LPAPVPSPLPSPASTQTLALAPALAPTL 1691
Score = 38.9 bits (89), Expect = 0.010
Identities = 73/311 (23%), Positives = 100/311 (32%), Gaps = 35/311 (11%)
Query: 52 PVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATVVP 111
P P P + P + ++ + VP P AT T A A T VP
Sbjct: 1108 PTPPAPVRLSPAPPPGSSSLLKPLTVPPGYTFPPAAATTTSTTT-------ATATTTAVP 1160
Query: 112 PMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRADS 171
P + P ++ L S E + + + A QR P Q +
Sbjct: 1161 APTPAPQ---RLILSPDMQARLPSGEV---VSIGQLASLAQRPVANAGGSKPLTFQIQGN 1214
Query: 172 ALSSAAAG--------PRPMALRPPHQALVGPP--LPGPPGPPMMLPPMARAPGPPLGSM 221
L+ A PRP+ H G L P ++ +A PGP S+
Sbjct: 1215 KLTLTGAQVRQLAVGQPRPLQRNVVHLVSAGGQHHLISQPAHVALIQAVAPTPGPTPVSV 1274
Query: 222 AALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIG 281
P PA GL L L + +V G+ + A G P P
Sbjct: 1275 LPSSTPSTTPAPT---GLSLPLAANQVPPTMVNNT-GVVKIVVRQAPRDGLTPVPPLAPA 1330
Query: 282 PSLPLALAMPLPEPEP------LPLP-LEVVRGLLP-PLRIPELLSLRPRPRPPRPEPPP 333
P P + + P P LP P L R +P P + LL L P P P
Sbjct: 1331 PRPPSSGLPAVLNPRPTLTPGRLPTPTLGTARAPMPTPTLVRPLLKLVHSPSPEVSASAP 1390
Query: 334 GLMALEVPEPL 344
G L + PL
Sbjct: 1391 GAAPLTISSPL 1401
Score = 38.5 bits (88), Expect = 0.014
Identities = 73/284 (25%), Positives = 92/284 (32%), Gaps = 84/284 (29%)
Query: 146 RAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGP-- 203
R A P+ P PA +P ++ SA +A P P+ + P H LP PP P
Sbjct: 2438 RPAPRPRPTPASAPAAIPALVPVPVSAPVPISA-PNPITILPVHI------LPSPPPPSQ 2490
Query: 204 ------PMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELG----------LGLGLGLKE 247
P PP A P PP + + L P++P LG L LGL+
Sbjct: 2491 IPPCSSPACTPPPACTP-PPAHTPPPAQTCLVTPSSPLLLGPPSVPISASVTNLPLGLRP 2549
Query: 248 KEEAVVAAAA---GLEEASAA--------------------------------------V 266
+ E A A LE AS A +
Sbjct: 2550 EAELCAQALASPESLELASVASSETSSLSLVPPKDLLPVAVEILPVSEKNLSLTPSAPSL 2609
Query: 267 AVGAGGAPAGPAVIGPSLPLALAMP-LPEPEPLPLPLEVVRGL-LPPL------------ 312
+ AG P G P + LPE E LPL + GL LPP
Sbjct: 2610 TLEAGSIPNGQEQEAPDSAEGTTLTVLPEGEELPLCVSESNGLELPPSAASDEPLQEPLE 2669
Query: 313 --RIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGEDKKKGKPE 354
R E L+ P PE P L+ EV P PE
Sbjct: 2670 ADRTSEELTEAKTP-TSSPEKPQELVTAEVAAPSTSSSATSSPE 2712
Score = 38.1 bits (87), Expect = 0.018
Identities = 77/334 (23%), Positives = 116/334 (34%), Gaps = 55/334 (16%)
Query: 47 EVLGAPVPG-IPTAVPA---VPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEAR 102
E+ P PG +P +PA V P P + P PV+ P + N+ Q
Sbjct: 1031 ELSAQPTPGPVPQVLPASLMVSASPAGPPLIPASRPPGPVLLPPLQPNSGSLPQVLPSPL 1090
Query: 103 AAAAATVVPP-----MVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPIL 157
+ T PP + PP PV P +P + L+ V P
Sbjct: 1091 GVLSGTSRPPTPTLSLKPTPP--APVRLSP-------APPPGSSSLLKPLTVPP--GYTF 1139
Query: 158 RPAFVPHVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPG--PPGPPMMLPPMARAPG 215
PA +A ++A P P P + ++ P + P G + + +A
Sbjct: 1140 PPAAATTTSTTTATATTTAVPAPTP----APQRLILSPDMQARLPSGEVVSIGQLASLAQ 1195
Query: 216 PPLGSMAALRPPLEE---------PAAPRELGLGLGLGLKEKEEAVVAAAA--GLEEASA 264
P+ + +P + A R+L +G L+ +V+A L A
Sbjct: 1196 RPVANAGGSKPLTFQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHLVSAGGQHHLISQPA 1255
Query: 265 AVAVGAGGAPA-GPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPE------L 317
VA+ AP GP P L + P P P L L + +PP + +
Sbjct: 1256 HVALIQAVAPTPGPT---PVSVLPSSTPSTTPAPTGLSLPLAANQVPPTMVNNTGVVKIV 1312
Query: 318 LSLRPR-------PRPPRPEPP-PGLMALEVPEP 343
+ PR P P P PP GL A+ P P
Sbjct: 1313 VRQAPRDGLTPVPPLAPAPRPPSSGLPAVLNPRP 1346
Score = 35.0 bits (79), Expect = 0.15
Identities = 46/180 (25%), Positives = 68/180 (37%), Gaps = 44/180 (24%)
Query: 187 PPHQALVGPPLPGPPGPPMMLPPMARAPGPPL-----------------------GSMAA 223
P +++ GP P G P P + P PP G++ A
Sbjct: 2791 PSVRSMSGPESSPPIGGPCEAAPSSSLPTPPQQPFIARRHIELGVTGGGSPENGDGALLA 2850
Query: 224 LRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGA--GGAPA-GPAVI 280
+ P PA R G +K + A G++EA ++ G G P GP +
Sbjct: 2851 ITP----PAVKRRRGRP-----PKKNRSPADAGRGVDEAPSSTLKGKTNGADPVPGPETL 2901
Query: 281 GPSLPLALAMPLPEPEPL-PLPLEVVRGLLPPLRIPELLSLRPRPRPP--RPEPPPGLMA 337
+ P+ +P P+PL P P+ LL P + R R RPP R P PG ++
Sbjct: 2902 IVADPVLEPQLIPGPQPLGPQPVHRPNPLLSP------VEKRRRGRPPKARDLPIPGTIS 2955
Score = 34.7 bits (78), Expect = 0.20
Identities = 58/264 (21%), Positives = 79/264 (29%), Gaps = 64/264 (24%)
Query: 146 RAAVAPQRAPILRPAFVPHVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPM 205
R P+ + P VP VL + +S A P A RPP L+ P P P
Sbjct: 1025 RPPPGPELSAQPTPGPVPQVLPASLMVSASPAGPPLIPASRPPGPVLLPPLQPNSGSLPQ 1084
Query: 206 MLP-------------------------PMARAPGPPLGSMAALRPPLEEPA-------- 232
+LP P+ +P PP GS + L+P P
Sbjct: 1085 VLPSPLGVLSGTSRPPTPTLSLKPTPPAPVRLSPAPPPGSSSLLKPLTVPPGYTFPPAAA 1144
Query: 233 --------------------APRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGG 272
AP+ L L + + VV+ A VA G
Sbjct: 1145 TTTSTTTATATTTAVPAPTPAPQRLILSPDMQARLPSGEVVSIGQLASLAQRPVANAGGS 1204
Query: 273 APAGPAVIGPSLPL--ALAMPLPEPEPLPLPLEVV---------RGLLPPLRIPELLSLR 321
P + G L L A L +P PL VV + P + + ++
Sbjct: 1205 KPLTFQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHLVSAGGQHHLISQPAHVALIQAVA 1264
Query: 322 PRPRPPRPEPPPGLMALEVPEPLG 345
P P P P P P G
Sbjct: 1265 PTPGPTPVSVLPSSTPSTTPAPTG 1288
Score = 32.3 bits (72), Expect = 0.98
Identities = 52/216 (24%), Positives = 71/216 (32%), Gaps = 39/216 (18%)
Query: 165 VLQRADSALSSAAA---GPRPMALRPPHQALVGP-------PLPGPPGPPMML------- 207
+ Q A AL A A GP P+++ P P PL PP M+
Sbjct: 1251 ISQPAHVALIQAVAPTPGPTPVSVLPSSTPSTTPAPTGLSLPLAANQVPPTMVNNTGVVK 1310
Query: 208 --------------PPMARAPGPPLGSMAAL---RPPLEEPAAPRELGLGLGLGLKEKEE 250
PP+A AP PP + A+ RP L P LG
Sbjct: 1311 IVVRQAPRDGLTPVPPLAPAPRPPSSGLPAVLNPRPTLTPGRLPTPT-LGTARAPMPTPT 1369
Query: 251 AVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSL--PLALAMPLPEPEPLPLPLEVVRGL 308
V + S V+ A GA P I L P +L P P P+P + +
Sbjct: 1370 LVRPLLKLVHSPSPEVSASAPGA--APLTISSPLHVPSSLPGPASSPMPIPNSSPLASPV 1427
Query: 309 LPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPL 344
+ +P SL P P + + + PL
Sbjct: 1428 SSTVSVPLSSSLPISVPTTLPAPASAPLTIPISAPL 1463
Score = 29.6 bits (65), Expect = 6.3
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 291 PLPEPEPLPLPLEVVRGLLP-PLRIPELLSLRPRPRPP------RPEPPPGLMALEVPEP 343
P P P P P+ ++V R L P P + + + PR P RP P P L A P P
Sbjct: 981 PDPPPRPKPVKMKVNRMLQPVPKQEGRTVVVVNNPRAPLGPVPVRPPPGPELSAQPTPGP 1040
Query: 344 L 344
+
Sbjct: 1041 V 1041
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 59.7 bits (143), Expect = 6e-09
Identities = 65/214 (30%), Positives = 77/214 (35%), Gaps = 49/214 (22%)
Query: 148 AVAPQRAPILRPAFVPHVLQRADSALSSAAAGPRPMA-LRPPHQALVGPPLPGPPGPPMM 206
A + Q+AP P VP +A GP P LRPP GPP PPGPP
Sbjct: 386 ASSQQQAP---PQSVPPSQIQAPPMPGPPPLGPPPAPPLRPP-----GPPTGLPPGPPPG 437
Query: 207 LPPMARAPGPP--LGSMAALRPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASA 264
PP R PG P G + L PP P P G GL
Sbjct: 438 APPFLRPPGMPGLRGPLPRLLPPGPPPGRPPGPPPGPPPGL------------------- 478
Query: 265 AVAVGAGGAPAGPAVIGPSLPLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRP 324
P GP GP P L P P P P P G++ P +P L P
Sbjct: 479 ---------PPGPPPRGP--PPRLPPPAPPGIPPPRP-----GMMRPPLVPPLGPAPPGL 522
Query: 325 RPPRPEPPPGLMALE---VPEPLGEDKKKGKPEK 355
PP P P PG+++ + P +D EK
Sbjct: 523 FPPAPLPNPGVLSAPPNLIQRPKADDTSAATIEK 556
Score = 52.8 bits (125), Expect = 7e-07
Identities = 44/136 (32%), Positives = 50/136 (36%), Gaps = 5/136 (3%)
Query: 104 AAAATVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVP 163
A +V P + PP GP GP L P + P P LRP +P
Sbjct: 392 APPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGL---PPGPPPGAPPFLRPPGMP 448
Query: 164 HVLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAA 223
+ L RP PP PP P P GPP LPP A PG P
Sbjct: 449 GLRGPLPRLLPPGPPPGRPPG-PPPGPPPGLPPGPPPRGPPPRLPPPA-PPGIPPPRPGM 506
Query: 224 LRPPLEEPAAPRELGL 239
+RPPL P P GL
Sbjct: 507 MRPPLVPPLGPAPPGL 522
Score = 29.6 bits (65), Expect = 6.3
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 184 ALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLEEPAAPRELGLGLGL 243
A PP +A+ PL G P LPP + PGPP G PP R++G L L
Sbjct: 172 AYGPPTRAVSILPLLGHGVP--RLPPGRKPPGPPPGP----PPPQVVQMYGRKVGFALDL 225
Query: 244 GLKEKEE 250
+ ++E
Sbjct: 226 PPRRRDE 232
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 59.3 bits (142), Expect = 7e-09
Identities = 24/76 (31%), Positives = 47/76 (61%)
Query: 382 RIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMRE 441
++F G L E N+ L F ++ ++ +++D+ T K++G+ FV+F+ P+D A R+
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 442 MNGKYVGSRPIKLRKS 457
MNGK + + IK+ ++
Sbjct: 69 MNGKSLDGKAIKVEQA 84
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 58.9 bits (141), Expect = 1e-08
Identities = 25/73 (34%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 382 RIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMRE 441
+++ +L + ++D+ L FS F S + KV++++ G++KG+G + F P D +AM E
Sbjct: 294 KLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKAMTE 351
Query: 442 MNGKYVGSRPIKL 454
MNG+ +GS+P+ +
Sbjct: 352 MNGRILGSKPLSI 364
Score = 50.1 bits (118), Expect = 5e-06
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ GDL +V +D+L R FS L ++ RD+ T ++ GY +V+F +D +A+ M
Sbjct: 12 LYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTM 71
Query: 443 NGKYVGSRPIKLRKSMWKDRN 463
N + + I+L MW R+
Sbjct: 72 NFDIIKGKSIRL---MWSQRD 89
Score = 49.7 bits (117), Expect = 6e-06
Identities = 27/98 (27%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ + G +++D+ L FS++ L KV+ D +GK+KG+GFVSF +A+ EM
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 443 NGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR 480
NG+ + + I + ++ K +++ ++ K+ +R
Sbjct: 251 NGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIR 288
Score = 44.7 bits (104), Expect = 2e-04
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
+F +L +++ L FS F L +KV+ D + +KGY FV F++ S RA+ EM
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 443 NGKYV-GSRPIKLRKSMWKDRNLDVVRKKQKE 473
NGK + G + R KDR + +R K E
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAE-LRSKASE 188
>gi|4502847 cold inducible RNA binding protein [Homo sapiens]
Length = 172
Score = 58.5 bits (140), Expect = 1e-08
Identities = 26/77 (33%), Positives = 48/77 (62%)
Query: 378 ADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVR 437
+D+ ++F G L + N+ L + FS++ + V++D+ T +++G+GFV+F++ D
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 438 AMREMNGKYVGSRPIKL 454
AM MNGK V R I++
Sbjct: 63 AMMAMNGKSVDGRQIRV 79
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 58.2 bits (139), Expect = 2e-08
Identities = 23/77 (29%), Positives = 49/77 (63%)
Query: 382 RIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMRE 441
++F G L + ++ L F ++ +K +++D++T K++G+ FV+F+ P+D A R+
Sbjct: 9 KLFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARD 68
Query: 442 MNGKYVGSRPIKLRKSM 458
MNGKY+ + I + +++
Sbjct: 69 MNGKYLDGKAIMVAQTI 85
>gi|27436925 synoviolin 1 isoform a [Homo sapiens]
Length = 616
Score = 56.6 bits (135), Expect = 5e-08
Identities = 62/194 (31%), Positives = 80/194 (41%), Gaps = 30/194 (15%)
Query: 131 SHLDSPEAREAMFLRRAAVAPQRAPILR---PAFVPHVLQRADSALSSAAAGPRPMALRP 187
+H+ + F R+ R +LR PA P + AD A P P+ +P
Sbjct: 308 NHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQG-PPPAPHPPPLLPQP 366
Query: 188 PH--QALVGPPLPGPPGPPMMLPPMARAPG--PPLGSMAALRPPLEEPAAPRELGLGLGL 243
P+ Q L+ PP P PG + PPM P PP S A+ PP A R G
Sbjct: 367 PNFPQGLL-PPFP--PGMFPLWPPMGPFPPVPPPPSSGEAVAPPSTSAALSRPSG----- 418
Query: 244 GLKEKEEAVVAAAAGLEEASAAVAV---GAGGAP-AGPAVIGPSLPLALAMPLPEP---E 296
A AAG +A+ G+G AP AGPA P P + MPLP P
Sbjct: 419 -------AATTTAAGTSATAASATASGPGSGSAPEAGPAPGFPFPPPWMGMPLPPPFAFP 471
Query: 297 PLPLPLEVVRGLLP 310
P+P+P GL P
Sbjct: 472 PMPVPPAGFAGLTP 485
Score = 34.7 bits (78), Expect = 0.20
Identities = 28/71 (39%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 274 PAGPAVIGPSLPLALAMPLPEPEPL-PLPLEVVRGLLPPLRIPELLSLRP--RPRPPRPE 330
P PA GP P P P PL P P +GLLPP P + L P P PP P
Sbjct: 345 PPEPADQGPP-------PAPHPPPLLPQPPNFPQGLLPPFP-PGMFPLWPPMGPFPPVPP 396
Query: 331 PPPGLMALEVP 341
PP A+ P
Sbjct: 397 PPSSGEAVAPP 407
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 56.6 bits (135), Expect = 5e-08
Identities = 31/94 (32%), Positives = 58/94 (61%), Gaps = 2/94 (2%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ + G +++D+ L F +F L KV+ D+ +GK+KG+GFVSF+ D +A+ EM
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 443 NGKYVGSRPIKLRKSMWK-DRNLDVVRKKQKEKK 475
NGK + + I + ++ K +R ++ RK ++ K+
Sbjct: 252 NGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQ 285
Score = 53.5 bits (127), Expect = 4e-07
Identities = 25/79 (31%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ +L + ++D+ L + FS F + AKV+ + G++KG+GFV F P + +A+ EM
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEM 353
Query: 443 NGKYVGSRPIKLRKSMWKD 461
NG+ V ++P+ + + K+
Sbjct: 354 NGRIVATKPLYVALAQRKE 372
Score = 52.0 bits (123), Expect = 1e-06
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ GDL +V + +L FS L +V RD T ++ GY +V+F+ P+D RA+ M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 443 NGKYVGSRPIKLRKSMWKDRN 463
N + +P+++ MW R+
Sbjct: 73 NFDVIKGKPVRI---MWSQRD 90
Score = 46.2 bits (108), Expect = 7e-05
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 347 DKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPS 406
D KGKP ++ S DPSL + + IF +L +++ L FS F +
Sbjct: 75 DVIKGKPVRIMW--------SQRDPSLRKSGVGN--IFIKNLDKSIDNKALYDTFSAFGN 124
Query: 407 FLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPI 452
L KV+ D+ +KGYGFV F+ RA+ +MNG + R +
Sbjct: 125 ILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 55.8 bits (133), Expect = 8e-08
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKA-KVIRDKRTGKTKGYGFVSFKDPSDYVRAMRE 441
IF G+L E+++ +L FS F L+ K++RD TG +KGY F++F A+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 161
Query: 442 MNGKYVGSRPIKLRKSMWKD 461
MNG+Y+ +RPI + + KD
Sbjct: 162 MNGQYLCNRPITVSYAFKKD 181
Score = 49.3 bits (116), Expect = 8e-06
Identities = 26/87 (29%), Positives = 48/87 (55%)
Query: 380 DFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAM 439
D ++ G L +V++ +L F + + + +D+ TG+ +GYGFV F D A+
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 440 REMNGKYVGSRPIKLRKSMWKDRNLDV 466
+ MN + +PI++ K+ ++NLDV
Sbjct: 72 KIMNMIKLYGKPIRVNKASAHNKNLDV 98
Score = 40.8 bits (94), Expect = 0.003
Identities = 56/190 (29%), Positives = 70/190 (36%), Gaps = 33/190 (17%)
Query: 173 LSSAAAGPRPMALRPPHQALVGPPLPG--PPG-----PPMMLPPMARAPGPPLGSMAALR 225
+SS +G P + PP P PG PPG PP +PP A GPP
Sbjct: 225 VSSLGSGLPPPGMPPPGSFPPPVPPPGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAG 284
Query: 226 PPLEEPAAPRELGLGLGLGLKEKEEAVVA--AAAGLEEASAAVAVGAGGAPAG---PAVI 280
P + P G G+ + +A GL A G+GG P P +
Sbjct: 285 HPGHGHSHPHPFPPG-GMPHPGMSQMQLAHHGPHGLGHPHAGPP-GSGGQPPPRPPPGMP 342
Query: 281 GPSLPLALAMP-------LPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRP------- 326
P P + MP P P P+P +RG PPL P + PRP P
Sbjct: 343 HPGPP-PMGMPPRGPPFGSPMGHPGPMPPHGMRGP-PPLMPPHGYTGPPRPPPYGYQRGP 400
Query: 327 ---PRPEPPP 333
PRP P P
Sbjct: 401 LPPPRPTPRP 410
Score = 39.7 bits (91), Expect = 0.006
Identities = 56/176 (31%), Positives = 64/176 (36%), Gaps = 27/176 (15%)
Query: 176 AAAGPRPMALRPPHQALVGPPLPGPPGPPMM-----LPPMARAPG-PPLGSMAALRPPLE 229
AA P A RP PP P P P + LPP PG PP GS PP+
Sbjct: 196 AAQNPLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPP----PGMPPPGSFP---PPVP 248
Query: 230 EPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALA 289
P A L G+ + AAG SA GAG G + P P
Sbjct: 249 PPGA-----LPPGIPPAMPPPPMPPGAAGHGPPSAGTP-GAGHPGHGHSHPHPFPPGG-- 300
Query: 290 MPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLG 345
MP P + L GL P P +P PRPP P PG P P+G
Sbjct: 301 MPHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRPPPGMPHPG------PPPMG 350
Score = 37.4 bits (85), Expect = 0.030
Identities = 68/293 (23%), Positives = 84/293 (28%), Gaps = 99/293 (33%)
Query: 50 GAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAATV 109
G P PG+P P P VP A+ P + P
Sbjct: 231 GLPPPGMP---PPGSFPPPVPPPGALPPGIPPAMPP------------------------ 263
Query: 110 VPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQRA 169
PPM G GP G H + F P + + PH L
Sbjct: 264 -PPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGMPHPGMSQMQLAHHGPHGLGHP 322
Query: 170 DSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPPLE 229
+ + P P RPP P +P P PPM +PP GPP GS P+
Sbjct: 323 HAGPPGSGGQPPP---RPP------PGMPHPGPPPMGMPPR----GPPFGS------PMG 363
Query: 230 EPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLALA 289
P G+ GP + P P
Sbjct: 364 HPGPMPPHGM-----------------------------------RGPPPLMP--PHGYT 386
Query: 290 MPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPE 342
P P P P RG LPP PRP P P PP G + +P+
Sbjct: 387 GP-----PRPPPYGYQRGPLPP----------PRPTPRPPVPPRGPLRGPLPQ 424
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 55.8 bits (133), Expect = 8e-08
Identities = 23/76 (30%), Positives = 47/76 (61%)
Query: 382 RIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMRE 441
++F G L E ++ L F ++ ++ +++D+ T K++G+ FV+F+ P+D A R+
Sbjct: 9 KLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAARD 68
Query: 442 MNGKYVGSRPIKLRKS 457
MNGK + + IK+ ++
Sbjct: 69 MNGKSLDGKAIKVAQA 84
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 55.5 bits (132), Expect = 1e-07
Identities = 26/92 (28%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ +L + ++DD L + FS + AKV+ + G +KG+GFV F P + +A+ EM
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353
Query: 443 NGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEK 474
NG+ VG++P+ + + K+ ++ + ++
Sbjct: 354 NGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Score = 52.0 bits (123), Expect = 1e-06
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
++ GDL +V + +L FS L +V RD T ++ GY +++F+ P+D RA+ M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 443 NGKYVGSRPIKLRKSMWKDRN 463
N + + +PI++ MW R+
Sbjct: 73 NFEMLKGQPIRI---MWSQRD 90
Score = 44.3 bits (103), Expect = 2e-04
Identities = 27/98 (27%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 383 IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREM 442
I+ +L +V++ L FS+F L KV+RD +G ++ +GFV+F+ + +A+ M
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRCFGFVNFEKHEEAQKAVVHM 251
Query: 443 NGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR 480
NGK V R + ++ + + ++++ ++ K+ LR
Sbjct: 252 NGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLR 289
Score = 36.6 bits (83), Expect = 0.052
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 367 SWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGF 426
S DP L + + IF +L + +++ L FS F + L KV D+ ++G+GF
Sbjct: 87 SQRDPGLRKSGVGN--IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGF 142
Query: 427 VSFKDPSDYVRAMREMNGKYVGSRPI 452
V F+ +A+ MNG + R +
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKV 168
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 55.5 bits (132), Expect = 1e-07
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 372 SLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKD 431
+L + A R++ G L + +D+L F F +++ D TG++KGYGF++F D
Sbjct: 241 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSD 300
Query: 432 PSDYVRAMREMNGKYVGSRPIKL 454
+A+ ++NG + RP+K+
Sbjct: 301 SECAKKALEQLNGFELAGRPMKV 323
Score = 30.0 bits (66), Expect = 4.9
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 377 DADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYV 436
+ D +FC L + L FS ++I D+ + ++KG +V F D S
Sbjct: 149 ERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVP 208
Query: 437 RAMREMNGKYVGSRPIKLRKS 457
A+ + G+ V PI ++ S
Sbjct: 209 LAI-GLTGQRVLGVPIIVQAS 228
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,952,365
Number of Sequences: 37866
Number of extensions: 1982225
Number of successful extensions: 30875
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 1336
Number of HSP's that attempted gapping in prelim test: 13960
Number of HSP's gapped (non-prelim): 11572
length of query: 480
length of database: 18,247,518
effective HSP length: 106
effective length of query: 374
effective length of database: 14,233,722
effective search space: 5323412028
effective search space used: 5323412028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.