Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: RBMXL1 Sequence: fasta or formatted (390aa) NCBI GI: 242117971
Description:

RNA binding motif protein, X-linked-like 1

Referenced in:

hnRNP
RNA-binding Proteins

Other entries for this name:
alt mRNA [390aa] RNA binding motif protein, X-linked-like 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         16           2
 C cysteine            0.3          1           1
 D aspartate           8.7         34           2
 E glutamate           3.3         13           1
 F phenylalanine       2.1          8           1
 G glycine            15.4         60           3
 H histidine           1.0          4           1
 I isoleucine          1.0          4           1
 K lysine              3.3         13           1
 L leucine             3.6         14           2
 M methionine          1.5          6           1
 N asparagine          1.8          7           1
 P proline            10.5         41           5
 Q glutamine           0.5          2           1
 R arginine           13.8         54           2
 S serine             16.4         64           4
 T threonine           2.8         11           1
 V valine              2.8         11           1
 W tryptophan          0.0          0           0
 Y tyrosine            6.9         27           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA binding motif protein, X-linked-like 1 
RBMXL1                1.000   RNA binding motif protein, X-linked-like 1 
RBMX                  0.942   RNA binding motif protein, X-linked 
RBMXL2                0.630   testes-specific heterogenous nuclear ribonucleoprot...
RBMY1B                0.397   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1D                0.397   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1A1               0.397   RNA binding motif protein, Y-linked, family 1, member...
RBMY1F                0.397   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1J                0.397   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1E                0.395   RNA binding motif protein, Y-linked, family 1, membe...
RBMXL3                0.343   RNA binding motif protein, X-linked-like 3 
LOC100288788          0.260   PREDICTED: similar to RNA binding motif protein, X-...
LOC100288788          0.260   PREDICTED: hypothetical protein XP_002343863 
LOC100291994          0.180   PREDICTED: hypothetical protein XP_002346350 
CIRBP                 0.125   cold inducible RNA binding protein 
RBM3                  0.101   RNA binding motif protein 3 
TAF15                 0.094   TBP-associated factor 15 isoform 2 
TAF15                 0.094   TBP-associated factor 15 isoform 1 
HNRNPR                0.077   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.077   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.077   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.077   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
SFRS2B                0.077   splicing factor, arginine/serine-rich 2B 
SFRS2                 0.072   splicing factor, arginine/serine-rich 2 
DAZAP1                0.071   DAZ associated protein 1 isoform b 
TRA2A                 0.070   transformer-2 alpha 
HNRNPA1               0.068   heterogeneous nuclear ribonucleoprotein A1 isoform b...
HNRNPA3               0.067   heterogeneous nuclear ribonucleoprotein A3 
HNRNPA1               0.063   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
DAZAP1                0.062   DAZ associated protein 1 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press