Guide to the Human Genome
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Name: RBMXL2 Sequence: fasta or formatted (392aa) NCBI GI: 153252068
Description:

testes-specific heterogenous nuclear ribonucleoprotein G-T

Referenced in:

hnRNP
RNA-binding Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         24           3
 C cysteine            0.8          3           1
 D aspartate           7.4         29           3
 E glutamate           5.1         20           2
 F phenylalanine       2.6         10           1
 G glycine            17.1         67           5
 H histidine           1.3          5           1
 I isoleucine          0.8          3           1
 K lysine              3.1         12           1
 L leucine             4.8         19           2
 M methionine          1.8          7           1
 N asparagine          0.8          3           1
 P proline            10.7         42           4
 Q glutamine           0.5          2           1
 R arginine           16.8         66           2
 S serine              9.9         39           3
 T threonine           2.0          8           1
 V valine              2.6         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.9         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   testes-specific heterogenous nuclear ribonucleoprot... 
RBMX                  0.677   RNA binding motif protein, X-linked 
RBMXL1                0.621   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.621   RNA binding motif protein, X-linked-like 1 
RBMXL3                0.460   RNA binding motif protein, X-linked-like 3 
RBMY1B                0.287   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1E                0.285   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1D                0.285   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1A1               0.285   RNA binding motif protein, Y-linked, family 1, member...
RBMY1F                0.282   RNA binding motif protein, Y-linked, family 1, membe...
RBMY1J                0.282   RNA binding motif protein, Y-linked, family 1, membe...
LOC100288788          0.221   PREDICTED: similar to RNA binding motif protein, X-...
LOC100288788          0.221   PREDICTED: hypothetical protein XP_002343863 
LOC100291994          0.116   PREDICTED: hypothetical protein XP_002346350 
RBM3                  0.110   RNA binding motif protein 3 
CIRBP                 0.109   cold inducible RNA binding protein 
EWSR1                 0.071   Ewing sarcoma breakpoint region 1 isoform 4 
EWSR1                 0.071   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.071   Ewing sarcoma breakpoint region 1 isoform 1 
EWSR1                 0.071   Ewing sarcoma breakpoint region 1 isoform 2 
DAZAP1                0.071   DAZ associated protein 1 isoform b 
TAF15                 0.066   TBP-associated factor 15 isoform 2 
TAF15                 0.066   TBP-associated factor 15 isoform 1 
SFRS2                 0.062   splicing factor, arginine/serine-rich 2 
TRA2B                 0.061   splicing factor, arginine/serine-rich 10 
HNRNPR                0.061   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.061   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.061   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.061   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
TRA2A                 0.060   transformer-2 alpha 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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