Guide to the Human Genome
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Name: LOC100290121 Sequence: fasta or formatted (180aa) NCBI GI: 239749008
Description:

PREDICTED: hypothetical protein XP_002346879

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1         20           3
 C cysteine            1.7          3           1
 D aspartate           1.7          3           1
 E glutamate           3.3          6           1
 F phenylalanine       1.1          2           1
 G glycine             9.4         17           1
 H histidine           1.7          3           1
 I isoleucine          0.0          0           0
 K lysine              0.6          1           1
 L leucine             5.6         10           1
 M methionine          0.6          1           1
 N asparagine          0.6          1           1
 P proline            23.9         43           3
 Q glutamine           4.4          8           2
 R arginine           15.0         27           2
 S serine              7.8         14           1
 T threonine           6.1         11           3
 V valine              4.4          8           2
 W tryptophan          1.1          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346879 
LOC100292589          1.000   PREDICTED: hypothetical protein 
LOC100289406          1.000   PREDICTED: hypothetical protein XP_002342721 
FLJ22184              0.094   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.094   PREDICTED: hypothetical protein LOC80164 
SAMD1                 0.094   sterile alpha motif domain containing 1 
SYN1                  0.094   synapsin I isoform Ia 
SYN1                  0.094   synapsin I isoform Ib 
FLJ22184              0.089   PREDICTED: hypothetical protein FLJ22184 
SF3B4                 0.089   splicing factor 3b, subunit 4 
NACA                  0.086   nascent polypeptide-associated complex alpha subuni...
CPSF6                 0.083   cleavage and polyadenylation specific factor 6, 68 ...
ESX1                  0.083   extraembryonic, spermatogenesis, homeobox 1-like [Ho...
LOC100130360          0.081   PREDICTED: hypothetical protein 
IER5L                 0.078   immediate early response 5-like 
SF1                   0.075   splicing factor 1 isoform 2 
SF1                   0.075   splicing factor 1 isoform 1 
HCN4                  0.075   hyperpolarization activated cyclic nucleotide-gated p...
PRB2                  0.075   proline-rich protein BstNI subfamily 2 
ZFPM1                 0.075   zinc finger protein, multitype 1 
PRB4                  0.075   proline-rich protein BstNI subfamily 4 precursor [Ho...
LOC100129036          0.075   PREDICTED: hypothetical protein 
LOC100129036          0.075   PREDICTED: hypothetical protein 
LOC100129036          0.075   PREDICTED: hypothetical protein 
WASF2                 0.075   WAS protein family, member 2 
COL4A4                0.075   alpha 4 type IV collagen precursor 
SF3A2                 0.075   splicing factor 3a, subunit 2 
PCLO                  0.072   piccolo isoform 2 
PCLO                  0.072   piccolo isoform 1 
WIPF2                 0.072   WIRE protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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