Guide to the Human Genome
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Name: LOC728804 Sequence: fasta or formatted (231aa) NCBI GI: 239751037
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {194aa} PREDICTED: hypothetical protein
alt prot {194aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         22           2
 C cysteine            4.8         11           1
 D aspartate           1.7          4           1
 E glutamate           3.0          7           1
 F phenylalanine       1.3          3           1
 G glycine            13.9         32           2
 H histidine           4.3         10           1
 I isoleucine          0.4          1           1
 K lysine              2.6          6           1
 L leucine             8.7         20           2
 M methionine          0.9          2           1
 N asparagine          1.3          3           1
 P proline            10.8         25           2
 Q glutamine           3.9          9           1
 R arginine            6.1         14           2
 S serine             13.0         30           3
 T threonine           4.8         11           1
 V valine              5.6         13           1
 W tryptophan          2.2          5           1
 X unknown             0.9          2           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100130884          0.942   PREDICTED: hypothetical protein 
LOC100130884          0.929   PREDICTED: hypothetical protein 
LOC100130884          0.929   PREDICTED: hypothetical protein 
FLJ22184              0.041   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.041   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.041   PREDICTED: hypothetical protein LOC80164 
PHF1                  0.039   PHD finger protein 1 isoform a 
LMTK3                 0.032   lemur tyrosine kinase 3 
MN1                   0.030   meningioma  1 
SPAG4                 0.026   sperm associated antigen 4 
NOTCH3                0.024   Notch homolog 3 
MAP3K12               0.022   mitogen-activated protein kinase kinase kinase 12 [H...
HOXA13                0.022   homeobox A13 
GAK                   0.022   cyclin G associated kinase 
LOC100289721          0.022   PREDICTED: hypothetical protein XP_002347280 
FOXL2                 0.019   forkhead box L2 
LOC100287824          0.019   PREDICTED: hypothetical protein XP_002342669 
WDR33                 0.017   WD repeat domain 33 isoform 1 
MLL                   0.017   myeloid/lymphoid or mixed-lineage leukemia protein [...
FEV                   0.017   FEV (ETS oncogene family) 
NRG3                  0.017   neuregulin 3 
LOC100292339          0.017   PREDICTED: hypothetical protein 
LOC100288937          0.017   PREDICTED: hypothetical protein XP_002343343 
ZFPM1                 0.017   zinc finger protein, multitype 1 
LOC100129191          0.015   PREDICTED: hypothetical protein 
LOC100133638          0.015   PREDICTED: hypothetical protein 
LOC100129191          0.015   PREDICTED: hypothetical protein 
LOC100129191          0.015   PREDICTED: hypothetical protein 
LOC100287737          0.015   PREDICTED: hypothetical protein XP_002343203 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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