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Search of human proteins with 113424187
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|113424187 PREDICTED: hypothetical protein [Homo sapiens]
(268 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|113424187 PREDICTED: hypothetical protein [Homo sapiens] 555 e-158
gi|169206224 PREDICTED: hypothetical protein [Homo sapiens] 540 e-154
gi|169206527 PREDICTED: hypothetical protein [Homo sapiens] 540 e-154
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 44 1e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 44 1e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 41 0.001
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 40 0.002
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 40 0.002
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 40 0.002
gi|48762934 alpha 2 type I collagen [Homo sapiens] 40 0.003
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 39 0.005
gi|239745938 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 39 0.005
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 39 0.005
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 39 0.006
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 38 0.008
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 38 0.008
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 38 0.008
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 38 0.011
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 37 0.018
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 37 0.024
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 37 0.024
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 36 0.040
gi|4507741 twist [Homo sapiens] 35 0.069
gi|169211554 PREDICTED: hypothetical protein [Homo sapiens] 35 0.069
gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo ... 35 0.069
gi|169211959 PREDICTED: hypothetical protein [Homo sapiens] 35 0.069
gi|169211178 PREDICTED: hypothetical protein [Homo sapiens] 35 0.069
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 35 0.069
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 34 0.12
>gi|113424187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 555 bits (1429), Expect = e-158
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MLCRVRRGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRC 60
MLCRVRRGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRC
Sbjct: 1 MLCRVRRGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRC 60
Query: 61 GRMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKR 120
GRMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKR
Sbjct: 61 GRMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKR 120
Query: 121 TTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKR 180
TTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKR
Sbjct: 121 TTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKR 180
Query: 181 KWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPA 240
KWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPA
Sbjct: 181 KWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPA 240
Query: 241 HLTANFASEGLEGVPGSCFPSCGTLPFP 268
HLTANFASEGLEGVPGSCFPSCGTLPFP
Sbjct: 241 HLTANFASEGLEGVPGSCFPSCGTLPFP 268
>gi|169206224 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 540 bits (1392), Expect = e-154
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 8 GRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTE 67
GRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTE
Sbjct: 58 GRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTE 117
Query: 68 AARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQ 127
AARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQ
Sbjct: 118 AARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQ 177
Query: 128 IEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGP 187
IEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGP
Sbjct: 178 IEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGP 237
Query: 188 LGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFA 247
LGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFA
Sbjct: 238 LGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFA 297
Query: 248 SEGLEGVPGSCFPSCGTLPFP 268
SEGLEGVPGSCFPSCGTLPFP
Sbjct: 298 SEGLEGVPGSCFPSCGTLPFP 318
>gi|169206527 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 540 bits (1392), Expect = e-154
Identities = 261/261 (100%), Positives = 261/261 (100%)
Query: 8 GRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTE 67
GRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTE
Sbjct: 58 GRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTE 117
Query: 68 AARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQ 127
AARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQ
Sbjct: 118 AARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQ 177
Query: 128 IEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGP 187
IEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGP
Sbjct: 178 IEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGP 237
Query: 188 LGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFA 247
LGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFA
Sbjct: 238 LGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFA 297
Query: 248 SEGLEGVPGSCFPSCGTLPFP 268
SEGLEGVPGSCFPSCGTLPFP
Sbjct: 298 SEGLEGVPGSCFPSCGTLPFP 318
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 43.9 bits (102), Expect = 1e-04
Identities = 63/235 (26%), Positives = 82/235 (34%), Gaps = 26/235 (11%)
Query: 31 PLSPGGPAGKGGAGDPQGAGADPGNQGHR--CGRMGVTEAARLQAHTSHISLLSEGAKMH 88
P+ P GP G GA PQG +PG G G MG + K
Sbjct: 205 PMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAG 264
Query: 89 RWGSLPRNRGARRI-ATPGL-GARASRSPERVKRTTCPVLQIEAFAGRD--IGKKGGEGV 144
G P +GAR TPGL G + R + G D G+ G GV
Sbjct: 265 ERGP-PGPQGARGFPGTPGLPGVKGHR----------------GYPGLDGAKGEAGAPGV 307
Query: 145 QRKVGT-AEFGISAETGKKINRSTSYMQSHGNCLGKR-KWQRLGPLGQPGPVGCACEVSS 202
+ + G+ E G G + G R + GP G PGPVG A
Sbjct: 308 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGF 367
Query: 203 SGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGS 257
GA P A + G P + +P PA + N ++G+ G GS
Sbjct: 368 PGA-PGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGS 421
Score = 39.7 bits (91), Expect = 0.003
Identities = 64/248 (25%), Positives = 83/248 (33%), Gaps = 38/248 (15%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPG-----NQGHRCGRMGVTEAARL 71
PG+ + A P P G G+ GA P G PG +G + G GV A
Sbjct: 632 PGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGA 691
Query: 72 QAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAF 131
G + R P RG+ GA+ + P + T P
Sbjct: 692 PGLV--------GPRGER--GFPGERGSP-------GAQGLQGPRGLPGT--PGTDGPKG 732
Query: 132 AGRDIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRL-GPLG 189
A G G +G G E G + G K +R + GK + L GP+G
Sbjct: 733 ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG 792
Query: 190 QPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFAS 248
PGP G E G GPA + G AP G P P PA +
Sbjct: 793 PPGPAGANGEKGEVGPPGPAGSAGARG----APGERGETGP-------PGPAGFAGPPGA 841
Query: 249 EGLEGVPG 256
+G G G
Sbjct: 842 DGQPGAKG 849
Score = 37.7 bits (86), Expect = 0.011
Identities = 65/239 (27%), Positives = 78/239 (32%), Gaps = 26/239 (10%)
Query: 29 SDPLSPGGPAG-------KGGAGDPQGAG--ADPGNQGHRCGRMGVTEAARLQAHTSHIS 79
S P+ P GP G G AG P AG PG QG R G G ++ H +
Sbjct: 236 SGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR-GFPGTPGLPGVKGHRGYPG 294
Query: 80 LLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKK 139
L +GAK + G R + T P A G D G+
Sbjct: 295 L--DGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGA-RGND-GQP 350
Query: 140 GGEGVQRKVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC 198
G G VG A G G K + + G R G G PGP G +
Sbjct: 351 GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR--GEPGTPGSPGPAGASG 408
Query: 199 EVSSSGAGPAAAVDRGGP-CTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
+ G P A G P AP PG P P P T +G G PG
Sbjct: 409 NPGTDGI-PGAKGSAGAPGIAGAPGFPGPRGP-------PGPQGATGPLGPKGQTGEPG 459
Score = 37.0 bits (84), Expect = 0.018
Identities = 72/253 (28%), Positives = 85/253 (33%), Gaps = 23/253 (9%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 76
PG + S A P GP G GA P GA PG G R G G
Sbjct: 863 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG-RVGPPGSNGNPGPPGPPG 921
Query: 77 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRD- 135
+G K R S P R PGL A E+ + E G
Sbjct: 922 PSG--KDGPKGARGDSGPPGRAGE----PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQG 975
Query: 136 -IGKKGGEGVQRKVGTAEF----GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQ 190
G++G G+ + G F G S E GK+ S + +G GP G+
Sbjct: 976 LAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPP--GLTGPAGE 1033
Query: 191 PGPVGCACEVSSSGAGPAAAV--DRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFAS 248
PG G G AA V DRG T A APG P +P PA T
Sbjct: 1034 PGREGSPGADGPPGRDGAAGVKGDRGE--TGAVGAPGAPGPPG----SPGPAGPTGKQGD 1087
Query: 249 EGLEGVPGSCFPS 261
G G G PS
Sbjct: 1088 RGEAGAQGPMGPS 1100
Score = 33.5 bits (75), Expect = 0.20
Identities = 50/182 (27%), Positives = 60/182 (32%), Gaps = 48/182 (26%)
Query: 28 ASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKM 87
A P+ P GPAG G PQG D G G G G L+ H L
Sbjct: 1093 AQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP-GERG------LKGHRGFTGL------- 1138
Query: 88 HRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRK 147
LP G + GA P + PV GK G G+
Sbjct: 1139 ---QGLPGPPG----PSGDQGASGPAGPSGPRGPPGPV--------GPSGKDGANGIPGP 1183
Query: 148 VG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSS-SGA 205
+G G S ETG GN GP G PGP G ++S+ +G
Sbjct: 1184 IGPPGPRGRSGETGP--------AGPPGN---------PGPPGPPGPPGPGIDMSAFAGL 1226
Query: 206 GP 207
GP
Sbjct: 1227 GP 1228
Score = 32.7 bits (73), Expect = 0.34
Identities = 71/246 (28%), Positives = 81/246 (32%), Gaps = 49/246 (19%)
Query: 28 ASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR--CGRMGVTEAARLQAHTSHISLLSEGA 85
A P PG P KG AG P GA G QG R G G A + + GA
Sbjct: 362 AGGPGFPGAPGAKGEAG-PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGI--PGA 418
Query: 86 KMHRWGSLPRNRGARRIA-TPGL-GARASRSPERVKRTTCPVLQ-----IEAFAGRDIGK 138
K + GA IA PG G R P+ P Q I F G G
Sbjct: 419 K--------GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ-GP 469
Query: 139 KGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC 198
KG G G G + E GK+ R +GP+G PG G
Sbjct: 470 KGEPGPAGPQGAP--GPAGEEGKRGARGEP--------------GGVGPIGPPGERGAPG 513
Query: 199 EVSSSG----AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGV 254
G AGP A GP A N P R + LP + GL G
Sbjct: 514 NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDP-GRPGEPGLP-------GARGLTGR 565
Query: 255 PGSCFP 260
PG P
Sbjct: 566 PGDAGP 571
Score = 32.3 bits (72), Expect = 0.45
Identities = 60/243 (24%), Positives = 76/243 (31%), Gaps = 41/243 (16%)
Query: 4 RVRRGRDALALP--RPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCG 61
R RG L P PG++ A P P GP G G G PG G G
Sbjct: 989 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPP-G 1047
Query: 62 RMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRT 121
R G + T + + GA P ++ GA+ P
Sbjct: 1048 RDGAAGVKGDRGETGAVG--APGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPS----- 1100
Query: 122 TCPVLQIEAFAGRDIGKKGGEGVQRKVGT----AEFGISAETGKKINRSTSYMQSHGNCL 177
G G G+Q G E G E G K +R + +Q
Sbjct: 1101 ---------------GPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPP 1145
Query: 178 GKRKWQRL-------GPLGQPGPVGCACEVSSSG----AGPAAAVDRGGPCTSAPAAPGN 226
G Q GP G PGPVG + + ++G GP R G T PGN
Sbjct: 1146 GPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGE-TGPAGPPGN 1204
Query: 227 LSP 229
P
Sbjct: 1205 PGP 1207
Score = 28.1 bits (61), Expect = 8.4
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 11 ALALPRPGRK-RRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR 59
A A +PG K ++ + D + P GP G G QG D G++G +
Sbjct: 94 ATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEK 143
Score = 28.1 bits (61), Expect = 8.4
Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 185 LGPLGQPGPVGCACEVSSSG-AGPAAAVDRGGP--CTSAPAAPGNLSPDSRLLQNPLPAH 241
+GP G PGP G A E G G GP P PGN P P P
Sbjct: 116 VGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGP-PGPPGPPG 174
Query: 242 LTANFASE 249
L NFA++
Sbjct: 175 LGGNFAAQ 182
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 43.9 bits (102), Expect = 1e-04
Identities = 63/235 (26%), Positives = 82/235 (34%), Gaps = 26/235 (11%)
Query: 31 PLSPGGPAGKGGAGDPQGAGADPGNQGHR--CGRMGVTEAARLQAHTSHISLLSEGAKMH 88
P+ P GP G GA PQG +PG G G MG + K
Sbjct: 136 PMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAG 195
Query: 89 RWGSLPRNRGARRI-ATPGL-GARASRSPERVKRTTCPVLQIEAFAGRD--IGKKGGEGV 144
G P +GAR TPGL G + R + G D G+ G GV
Sbjct: 196 ERGP-PGPQGARGFPGTPGLPGVKGHR----------------GYPGLDGAKGEAGAPGV 238
Query: 145 QRKVGT-AEFGISAETGKKINRSTSYMQSHGNCLGKR-KWQRLGPLGQPGPVGCACEVSS 202
+ + G+ E G G + G R + GP G PGPVG A
Sbjct: 239 KGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGF 298
Query: 203 SGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGS 257
GA P A + G P + +P PA + N ++G+ G GS
Sbjct: 299 PGA-PGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGS 352
Score = 39.7 bits (91), Expect = 0.003
Identities = 64/248 (25%), Positives = 83/248 (33%), Gaps = 38/248 (15%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPG-----NQGHRCGRMGVTEAARL 71
PG+ + A P P G G+ GA P G PG +G + G GV A
Sbjct: 563 PGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGA 622
Query: 72 QAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAF 131
G + R P RG+ GA+ + P + T P
Sbjct: 623 PGLV--------GPRGER--GFPGERGSP-------GAQGLQGPRGLPGT--PGTDGPKG 663
Query: 132 AGRDIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRL-GPLG 189
A G G +G G E G + G K +R + GK + L GP+G
Sbjct: 664 ASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIG 723
Query: 190 QPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFAS 248
PGP G E G GPA + G AP G P P PA +
Sbjct: 724 PPGPAGANGEKGEVGPPGPAGSAGARG----APGERGETGP-------PGPAGFAGPPGA 772
Query: 249 EGLEGVPG 256
+G G G
Sbjct: 773 DGQPGAKG 780
Score = 37.7 bits (86), Expect = 0.011
Identities = 65/239 (27%), Positives = 78/239 (32%), Gaps = 26/239 (10%)
Query: 29 SDPLSPGGPAG-------KGGAGDPQGAG--ADPGNQGHRCGRMGVTEAARLQAHTSHIS 79
S P+ P GP G G AG P AG PG QG R G G ++ H +
Sbjct: 167 SGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGAR-GFPGTPGLPGVKGHRGYPG 225
Query: 80 LLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKK 139
L +GAK + G R + T P A G D G+
Sbjct: 226 L--DGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGA-RGND-GQP 281
Query: 140 GGEGVQRKVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC 198
G G VG A G G K + + G R G G PGP G +
Sbjct: 282 GPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPR--GEPGTPGSPGPAGASG 339
Query: 199 EVSSSGAGPAAAVDRGGP-CTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
+ G P A G P AP PG P P P T +G G PG
Sbjct: 340 NPGTDGI-PGAKGSAGAPGIAGAPGFPGPRGP-------PGPQGATGPLGPKGQTGEPG 390
Score = 37.0 bits (84), Expect = 0.018
Identities = 72/253 (28%), Positives = 85/253 (33%), Gaps = 23/253 (9%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 76
PG + S A P GP G GA P GA PG G R G G
Sbjct: 794 PGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG-RVGPPGSNGNPGPPGPPG 852
Query: 77 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRD- 135
+G K R S P R PGL A E+ + E G
Sbjct: 853 PSG--KDGPKGARGDSGPPGRAGE----PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQG 906
Query: 136 -IGKKGGEGVQRKVGTAEF----GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQ 190
G++G G+ + G F G S E GK+ S + +G GP G+
Sbjct: 907 LAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPP--GLTGPAGE 964
Query: 191 PGPVGCACEVSSSGAGPAAAV--DRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFAS 248
PG G G AA V DRG T A APG P +P PA T
Sbjct: 965 PGREGSPGADGPPGRDGAAGVKGDRGE--TGAVGAPGAPGPPG----SPGPAGPTGKQGD 1018
Query: 249 EGLEGVPGSCFPS 261
G G G PS
Sbjct: 1019 RGEAGAQGPMGPS 1031
Score = 33.5 bits (75), Expect = 0.20
Identities = 50/182 (27%), Positives = 60/182 (32%), Gaps = 48/182 (26%)
Query: 28 ASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKM 87
A P+ P GPAG G PQG D G G G G L+ H L
Sbjct: 1024 AQGPMGPSGPAGARGIQGPQGPRGDKGEAGEP-GERG------LKGHRGFTGL------- 1069
Query: 88 HRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRK 147
LP G + GA P + PV GK G G+
Sbjct: 1070 ---QGLPGPPG----PSGDQGASGPAGPSGPRGPPGPV--------GPSGKDGANGIPGP 1114
Query: 148 VG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSS-SGA 205
+G G S ETG GN GP G PGP G ++S+ +G
Sbjct: 1115 IGPPGPRGRSGETGP--------AGPPGN---------PGPPGPPGPPGPGIDMSAFAGL 1157
Query: 206 GP 207
GP
Sbjct: 1158 GP 1159
Score = 32.7 bits (73), Expect = 0.34
Identities = 71/246 (28%), Positives = 81/246 (32%), Gaps = 49/246 (19%)
Query: 28 ASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR--CGRMGVTEAARLQAHTSHISLLSEGA 85
A P PG P KG AG P GA G QG R G G A + + GA
Sbjct: 293 AGGPGFPGAPGAKGEAG-PTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGI--PGA 349
Query: 86 KMHRWGSLPRNRGARRIA-TPGL-GARASRSPERVKRTTCPVLQ-----IEAFAGRDIGK 138
K + GA IA PG G R P+ P Q I F G G
Sbjct: 350 K--------GSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQ-GP 400
Query: 139 KGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC 198
KG G G G + E GK+ R +GP+G PG G
Sbjct: 401 KGEPGPAGPQGAP--GPAGEEGKRGARGEP--------------GGVGPIGPPGERGAPG 444
Query: 199 EVSSSG----AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGV 254
G AGP A GP A N P R + LP + GL G
Sbjct: 445 NRGFPGQDGLAGPKGAPGERGPSGLAGPKGANGDP-GRPGEPGLP-------GARGLTGR 496
Query: 255 PGSCFP 260
PG P
Sbjct: 497 PGDAGP 502
Score = 32.3 bits (72), Expect = 0.45
Identities = 60/243 (24%), Positives = 76/243 (31%), Gaps = 41/243 (16%)
Query: 4 RVRRGRDALALP--RPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCG 61
R RG L P PG++ A P P GP G G G PG G G
Sbjct: 920 RGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPP-G 978
Query: 62 RMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRT 121
R G + T + + GA P ++ GA+ P
Sbjct: 979 RDGAAGVKGDRGETGAVG--APGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPS----- 1031
Query: 122 TCPVLQIEAFAGRDIGKKGGEGVQRKVGT----AEFGISAETGKKINRSTSYMQSHGNCL 177
G G G+Q G E G E G K +R + +Q
Sbjct: 1032 ---------------GPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPP 1076
Query: 178 GKRKWQRL-------GPLGQPGPVGCACEVSSSG----AGPAAAVDRGGPCTSAPAAPGN 226
G Q GP G PGPVG + + ++G GP R G T PGN
Sbjct: 1077 GPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGE-TGPAGPPGN 1135
Query: 227 LSP 229
P
Sbjct: 1136 PGP 1138
Score = 28.1 bits (61), Expect = 8.4
Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 185 LGPLGQPGPVGCACEVSSSG-AGPAAAVDRGGP--CTSAPAAPGNLSPDSRLLQNPLPAH 241
+GP G PGP G A E G G GP P PGN P P P
Sbjct: 47 VGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGP-PGPPGPPG 105
Query: 242 LTANFASE 249
L NFA++
Sbjct: 106 LGGNFAAQ 113
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 40.8 bits (94), Expect = 0.001
Identities = 70/247 (28%), Positives = 89/247 (36%), Gaps = 41/247 (16%)
Query: 31 PLSPG--GPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMH 88
P PG GPAGK G QG G G R G G + Q E K
Sbjct: 601 PGPPGAVGPAGKDGEAGAQGPPGPAGPAGER-GEQGPAGSPGFQGLPGPAGPPGEAGKPG 659
Query: 89 RWGSLPRNRGARRIATPG-LGARASRSPERVKRTTCPV----------------LQIEAF 131
G +P + GA PG GAR R + P + +A
Sbjct: 660 EQG-VPGDLGA-----PGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAG 713
Query: 132 AGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRL-GPLGQ 190
A G +G G+Q G E G + G K +R + + GK + L GP+G
Sbjct: 714 APGAPGSQGAPGLQGMPG--ERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGP 771
Query: 191 PGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASE 249
PGP G + SG +GPA GP T A APG+ P PA ++
Sbjct: 772 PGPAGAPGDKGESGPSGPA------GP-TGARGAPGDRGEPG----PPGPAGFAGPPGAD 820
Query: 250 GLEGVPG 256
G G G
Sbjct: 821 GQPGAKG 827
Score = 40.8 bits (94), Expect = 0.001
Identities = 72/272 (26%), Positives = 89/272 (32%), Gaps = 51/272 (18%)
Query: 9 RDALALPRPGRKRRSQALKASD-------------PLSPGGPAG----KGGAGD-----P 46
R A LP P R K +D P+ P GPAG KG +G P
Sbjct: 733 RGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGP 792
Query: 47 QGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPG 106
GA PG++G G G A GAK P + GA+ A P
Sbjct: 793 TGARGAPGDRGEP-GPPGPAGFAGPPGADGQ-----PGAKGE-----PGDAGAKGDAGPP 841
Query: 107 LGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEF-GISAETGKKINR 165
A + P + P G KG G G F G + G
Sbjct: 842 GPAGPAGPPGPIGNVGAP------------GAKGARGSAGPPGATGFPGAAGRVGPPGPS 889
Query: 166 STSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPA-AP 224
+ GK + GP G+ GP G EV G P A ++G P PA AP
Sbjct: 890 GNAGPPGPPGPAGKEGGK--GPRGETGPAGRPGEVGPPGP-PGPAGEKGSPGADGPAGAP 946
Query: 225 GNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
G P Q + L G G+PG
Sbjct: 947 GTPGPQGIAGQRGV-VGLPGQRGERGFPGLPG 977
Score = 36.6 bits (83), Expect = 0.024
Identities = 58/214 (27%), Positives = 68/214 (31%), Gaps = 21/214 (9%)
Query: 28 ASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR-----CGRMGVTEAARLQAHTSHISLLS 82
AS P+ P GP G G G PG G R G G+ A L H
Sbjct: 213 ASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSG 272
Query: 83 -EGAKMHRWGSLPRNRGARRIATPG-LGARASRSPERVK-RTTCPVLQIEAFAGRDIGKK 139
+GAK + P+ +PG GA P + P A A + G
Sbjct: 273 LDGAKGDAGPAGPKGEP----GSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGAT 328
Query: 140 GGEGVQRKVGTA-EFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC 198
G G G A G G K + G R G G PGP G A
Sbjct: 329 GAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVR-----GEPGPPGPAGAAG 383
Query: 199 EVSSSGAG--PAAAVDRGGP-CTSAPAAPGNLSP 229
+ GA P A G P AP PG P
Sbjct: 384 PAGNPGADGQPGAKGANGAPGIAGAPGFPGARGP 417
Score = 36.2 bits (82), Expect = 0.031
Identities = 76/274 (27%), Positives = 90/274 (32%), Gaps = 42/274 (15%)
Query: 7 RGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRC--GRMG 64
RGR P G + A A+ P P GPAG G GA + G QG R G G
Sbjct: 310 RGRPGAPGPA-GARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQG 368
Query: 65 VTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGL-GARASRSPERVKRTTC 123
V + G+ N PG GAR P+
Sbjct: 369 VRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPG 428
Query: 124 PVLQI-EAFAGRDIGKKGGEGVQRKVGT-AEFGISAETGKKINRSTSYMQSHGNCLGKRK 181
P E A G G +G VG G + E GK+ R
Sbjct: 429 PKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP------------- 475
Query: 182 WQRLGPLGQPGPVGCACEVSSSG-------AGP-AAAVDRGGPCTSAPAAP-GNLSPDSR 232
GP G PGP G S G AGP A +RG P PA P G+ R
Sbjct: 476 ----GPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSP---GPAGPKGSPGEAGR 528
Query: 233 LLQNPLPAHLTANFASEGLEGVPGSCFPSCGTLP 266
+ LP ++GL G PGS P T P
Sbjct: 529 PGEAGLP-------GAKGLTGSPGSPGPDGKTGP 555
Score = 35.4 bits (80), Expect = 0.053
Identities = 72/258 (27%), Positives = 89/258 (34%), Gaps = 45/258 (17%)
Query: 4 RVRRGRDALALP--RPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCG 61
R RG L P PG++ S A P P GP G G G PG +G G
Sbjct: 967 RGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSP-G 1025
Query: 62 RMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIA--TPGLGARASRSPERVK 119
R G S GAK R + P A PG A +S +R +
Sbjct: 1026 RDG-----------------SPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGE 1068
Query: 120 RTTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGK 179
T P A +G G G G G ETG++ +R G
Sbjct: 1069 --TGP-----AGPAGPVGPVGARGPAGPQGPR--GDKGETGEQGDRGIK---------GH 1110
Query: 180 RKWQRLGPLGQPGPVGCACEVSSSGA-GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPL 238
R + G G PGP G E SGA GPA RG P ++ L+ + P
Sbjct: 1111 RGFS--GLQGPPGPPGSPGEQGPSGASGPAG--PRGPPGSAGAPGKDGLNGLPGPIGPPG 1166
Query: 239 PAHLTANFASEGLEGVPG 256
P T + G G PG
Sbjct: 1167 PRGRTGDAGPVGPPGPPG 1184
Score = 33.1 bits (74), Expect = 0.26
Identities = 60/217 (27%), Positives = 74/217 (34%), Gaps = 42/217 (19%)
Query: 34 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSE-GAKMHRWGS 92
P GPAG P+GA PGN G + G G A Q + E GA
Sbjct: 690 PPGPAG------PRGANGAPGNDGAK-GDAGAPGAPGSQGAPGLQGMPGERGA-----AG 737
Query: 93 LPRNRGARRIATPGLGARASRSPERVKRTTCPV-LQIEAFAGRDIGKKGGEGVQRKVGT- 150
LP +G R A P GA S + V+ T P+ A A D G+ G G G
Sbjct: 738 LPGPKGDRGDAGP-KGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGAR 796
Query: 151 --------------AEF----GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPG 192
A F G + G K + + G GP G PG
Sbjct: 797 GAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGP-----AGPAGPPG 851
Query: 193 PVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSP 229
P+G V + GA A T P A G + P
Sbjct: 852 PIG---NVGAPGAKGARGSAGPPGATGFPGAAGRVGP 885
Score = 31.2 bits (69), Expect = 0.99
Identities = 59/222 (26%), Positives = 72/222 (32%), Gaps = 21/222 (9%)
Query: 28 ASDPLSPGGPAGKGGAGDPQGAGADPGNQG--HRCGRMGVTEAARLQAHTSHISLLSEGA 85
A P GP G+ G+ GA G +G GR G A + +
Sbjct: 276 AKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPG 335
Query: 86 KMHRWG--SLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEG 143
G P GA+ A P G R S P+ V+ P A A G G +G
Sbjct: 336 PTGPAGPPGFPGAVGAKGEAGP-QGPRGSEGPQGVRGEPGP--PGPAGAAGPAGNPGADG 392
Query: 144 VQ-RKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKR----------KWQRLGPLGQPG 192
K GI+ G R S Q G G + G G+PG
Sbjct: 393 QPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPG 452
Query: 193 PVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNL-SPDSR 232
PVG +G G A GP T P PG P SR
Sbjct: 453 PVGVQGPPGPAGEEGKRGARGEPGP-TGLPGPPGERGGPGSR 493
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 40.4 bits (93), Expect = 0.002
Identities = 61/220 (27%), Positives = 73/220 (33%), Gaps = 32/220 (14%)
Query: 31 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 90
P GP G G P GA G QG + G G A T + K
Sbjct: 1361 PSGEAGPPGPPGKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGKTGPVGPQGPAGK---- 1415
Query: 91 GSLPRNRGARRIATP----GLGARASRS--PERVKRTTCPVLQIEAFAGRDIGKKGGEGV 144
P G R I P GL A + P + P L+ D G KG +G
Sbjct: 1416 ---PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK------GDPGSKGEKGH 1466
Query: 145 QRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ-RLGPLGQPGPVGCACEVSSS 203
+G G E G+K +R Q G GPLG PGP G
Sbjct: 1467 PGLIGL--IGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPK 1524
Query: 204 G----AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLP 239
G GPA G P PG+ P ++Q PLP
Sbjct: 1525 GNKGSTGPAGQKGDSG----LPGPPGSPGPPGEVIQ-PLP 1559
Score = 33.9 bits (76), Expect = 0.15
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 186 GPLGQPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTA 244
GP G PGPVG E S+G AGP R GP A +P + Q P
Sbjct: 1060 GPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGP-----AG 1114
Query: 245 NFASEGLEGVPGSCFPS 261
+G G+PG P+
Sbjct: 1115 RDGVQGPVGLPGPAGPA 1131
Score = 33.1 bits (74), Expect = 0.26
Identities = 58/246 (23%), Positives = 78/246 (31%), Gaps = 17/246 (6%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR--CGRMGVTEAARLQAH 74
PG+K + P P G G GA G +PG +G + G+ G A
Sbjct: 1146 PGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1205
Query: 75 TSHISLLSEGAKMHRWGSLPRNRGARRIATPGL-GARASRSPERVKRTTCPVLQIEAFAG 133
I L G N + PG G R + P P + + G
Sbjct: 1206 PGPIGLQGLPGPP---GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGG 1262
Query: 134 RDIGKKGGEGVQRKVGT-AEFGISAETGKKINRSTSYMQSHGNCLG-KRKWQRLGPLGQP 191
+G+KG G G E G+ G++ + + G K GP G P
Sbjct: 1263 --VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNP 1320
Query: 192 GPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGL 251
GPVG + G A D G PG P P P+ G
Sbjct: 1321 GPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP-------PGPSGEAGPPGPPGK 1373
Query: 252 EGVPGS 257
G PG+
Sbjct: 1374 RGPPGA 1379
Score = 31.6 bits (70), Expect = 0.76
Identities = 61/247 (24%), Positives = 83/247 (33%), Gaps = 24/247 (9%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 76
PG++ +S A L P GP G G P+G G +G + G G
Sbjct: 747 PGKEGQSGEKGA---LGPPGPQGPIGYPGPRGVKGADGVRGLK-GSKGEKGEDGFPGFKG 802
Query: 77 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSP--ERVKRTTCPVLQIEAFAGR 134
+ L + ++ + G PR G P + ++ V + + GR
Sbjct: 803 DMGLKGDRGEVGQIG--PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 860
Query: 135 DIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGP 193
G KG G G E G GK R G R GP G+PGP
Sbjct: 861 Q-GPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGAR-----GPTGKPGP 914
Query: 194 VGCACEVSSSGAGPAAAV-DRGGPCTSAPAA-PGNLSPDSRLLQNPLPAH--LTANFASE 249
G +S G GP +RG P PG P ++ LP H +
Sbjct: 915 KG-----TSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ 969
Query: 250 GLEGVPG 256
G G PG
Sbjct: 970 GKTGPPG 976
Score = 30.4 bits (67), Expect = 1.7
Identities = 68/267 (25%), Positives = 83/267 (31%), Gaps = 32/267 (11%)
Query: 8 GRDALALPRPGRKRRSQALKASDPLSPG---GPAGKGGAGDPQGAGADPGNQGHRCGRMG 64
G+D L PG++ + + P PG GP G G P G PG G G G
Sbjct: 952 GKDGLP-GHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPP-GEQG 1009
Query: 65 VTEAARLQAHTSHISLLSEGAKMHRWG--SLPRNRGARRI-ATPGL-GARASRSPERVKR 120
+ AA + K G P RG PGL G + P
Sbjct: 1010 LPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPP--GP 1067
Query: 121 TTCPVLQIEAFAGRDIGKKGGEGVQRKVGTA-EFGISAETGKKINRSTSYMQSHGNCLGK 179
P + A IG G G Q G A E G E G + +Q G
Sbjct: 1068 VGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGP 1127
Query: 180 RKWQRLGPLGQPGPVGCACEVSSSGA----------GPAAAVDRGGPCTSAPAAPGNLSP 229
GP G PG G E+ G GP GP + A G+ P
Sbjct: 1128 -----AGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEP 1182
Query: 230 DSRLLQNPLPAHLTANFASEGLEGVPG 256
R Q + EG G PG
Sbjct: 1183 GPRGQQG-----MFGQKGDEGARGFPG 1204
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 40.4 bits (93), Expect = 0.002
Identities = 61/220 (27%), Positives = 73/220 (33%), Gaps = 32/220 (14%)
Query: 31 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 90
P GP G G P GA G QG + G G A T + K
Sbjct: 1310 PSGEAGPPGPPGKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGKTGPVGPQGPAGK---- 1364
Query: 91 GSLPRNRGARRIATP----GLGARASRS--PERVKRTTCPVLQIEAFAGRDIGKKGGEGV 144
P G R I P GL A + P + P L+ D G KG +G
Sbjct: 1365 ---PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK------GDPGSKGEKGH 1415
Query: 145 QRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ-RLGPLGQPGPVGCACEVSSS 203
+G G E G+K +R Q G GPLG PGP G
Sbjct: 1416 PGLIGL--IGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPK 1473
Query: 204 G----AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLP 239
G GPA G P PG+ P ++Q PLP
Sbjct: 1474 GNKGSTGPAGQKGDSG----LPGPPGSPGPPGEVIQ-PLP 1508
Score = 33.9 bits (76), Expect = 0.15
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 186 GPLGQPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTA 244
GP G PGPVG E S+G AGP R GP A +P + Q P
Sbjct: 1009 GPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGP-----AG 1063
Query: 245 NFASEGLEGVPGSCFPS 261
+G G+PG P+
Sbjct: 1064 RDGVQGPVGLPGPAGPA 1080
Score = 33.1 bits (74), Expect = 0.26
Identities = 58/246 (23%), Positives = 78/246 (31%), Gaps = 17/246 (6%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR--CGRMGVTEAARLQAH 74
PG+K + P P G G GA G +PG +G + G+ G A
Sbjct: 1095 PGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1154
Query: 75 TSHISLLSEGAKMHRWGSLPRNRGARRIATPGL-GARASRSPERVKRTTCPVLQIEAFAG 133
I L G N + PG G R + P P + + G
Sbjct: 1155 PGPIGLQGLPGPP---GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGG 1211
Query: 134 RDIGKKGGEGVQRKVGT-AEFGISAETGKKINRSTSYMQSHGNCLG-KRKWQRLGPLGQP 191
+G+KG G G E G+ G++ + + G K GP G P
Sbjct: 1212 --VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNP 1269
Query: 192 GPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGL 251
GPVG + G A D G PG P P P+ G
Sbjct: 1270 GPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP-------PGPSGEAGPPGPPGK 1322
Query: 252 EGVPGS 257
G PG+
Sbjct: 1323 RGPPGA 1328
Score = 31.6 bits (70), Expect = 0.76
Identities = 61/247 (24%), Positives = 83/247 (33%), Gaps = 24/247 (9%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 76
PG++ +S A L P GP G G P+G G +G + G G
Sbjct: 696 PGKEGQSGEKGA---LGPPGPQGPIGYPGPRGVKGADGVRGLK-GSKGEKGEDGFPGFKG 751
Query: 77 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSP--ERVKRTTCPVLQIEAFAGR 134
+ L + ++ + G PR G P + ++ V + + GR
Sbjct: 752 DMGLKGDRGEVGQIG--PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 809
Query: 135 DIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGP 193
G KG G G E G GK R G R GP G+PGP
Sbjct: 810 Q-GPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGAR-----GPTGKPGP 863
Query: 194 VGCACEVSSSGAGPAAAV-DRGGPCTSAPAA-PGNLSPDSRLLQNPLPAH--LTANFASE 249
G +S G GP +RG P PG P ++ LP H +
Sbjct: 864 KG-----TSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ 918
Query: 250 GLEGVPG 256
G G PG
Sbjct: 919 GKTGPPG 925
Score = 30.4 bits (67), Expect = 1.7
Identities = 68/267 (25%), Positives = 83/267 (31%), Gaps = 32/267 (11%)
Query: 8 GRDALALPRPGRKRRSQALKASDPLSPG---GPAGKGGAGDPQGAGADPGNQGHRCGRMG 64
G+D L PG++ + + P PG GP G G P G PG G G G
Sbjct: 901 GKDGLP-GHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPP-GEQG 958
Query: 65 VTEAARLQAHTSHISLLSEGAKMHRWG--SLPRNRGARRI-ATPGL-GARASRSPERVKR 120
+ AA + K G P RG PGL G + P
Sbjct: 959 LPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPP--GP 1016
Query: 121 TTCPVLQIEAFAGRDIGKKGGEGVQRKVGTA-EFGISAETGKKINRSTSYMQSHGNCLGK 179
P + A IG G G Q G A E G E G + +Q G
Sbjct: 1017 VGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGP 1076
Query: 180 RKWQRLGPLGQPGPVGCACEVSSSGA----------GPAAAVDRGGPCTSAPAAPGNLSP 229
GP G PG G E+ G GP GP + A G+ P
Sbjct: 1077 -----AGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEP 1131
Query: 230 DSRLLQNPLPAHLTANFASEGLEGVPG 256
R Q + EG G PG
Sbjct: 1132 GPRGQQG-----MFGQKGDEGARGFPG 1153
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 40.4 bits (93), Expect = 0.002
Identities = 61/220 (27%), Positives = 73/220 (33%), Gaps = 32/220 (14%)
Query: 31 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 90
P GP G G P GA G QG + G G A T + K
Sbjct: 1349 PSGEAGPPGPPGKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGKTGPVGPQGPAGK---- 1403
Query: 91 GSLPRNRGARRIATP----GLGARASRS--PERVKRTTCPVLQIEAFAGRDIGKKGGEGV 144
P G R I P GL A + P + P L+ D G KG +G
Sbjct: 1404 ---PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK------GDPGSKGEKGH 1454
Query: 145 QRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ-RLGPLGQPGPVGCACEVSSS 203
+G G E G+K +R Q G GPLG PGP G
Sbjct: 1455 PGLIGL--IGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPK 1512
Query: 204 G----AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLP 239
G GPA G P PG+ P ++Q PLP
Sbjct: 1513 GNKGSTGPAGQKGDSG----LPGPPGSPGPPGEVIQ-PLP 1547
Score = 33.9 bits (76), Expect = 0.15
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 186 GPLGQPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTA 244
GP G PGPVG E S+G AGP R GP A +P + Q P
Sbjct: 1048 GPQGPPGPVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGP-----AG 1102
Query: 245 NFASEGLEGVPGSCFPS 261
+G G+PG P+
Sbjct: 1103 RDGVQGPVGLPGPAGPA 1119
Score = 33.1 bits (74), Expect = 0.26
Identities = 58/246 (23%), Positives = 78/246 (31%), Gaps = 17/246 (6%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR--CGRMGVTEAARLQAH 74
PG+K + P P G G GA G +PG +G + G+ G A
Sbjct: 1134 PGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGP 1193
Query: 75 TSHISLLSEGAKMHRWGSLPRNRGARRIATPGL-GARASRSPERVKRTTCPVLQIEAFAG 133
I L G N + PG G R + P P + + G
Sbjct: 1194 PGPIGLQGLPGPP---GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGG 1250
Query: 134 RDIGKKGGEGVQRKVGT-AEFGISAETGKKINRSTSYMQSHGNCLG-KRKWQRLGPLGQP 191
+G+KG G G E G+ G++ + + G K GP G P
Sbjct: 1251 --VGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNP 1308
Query: 192 GPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGL 251
GPVG + G A D G PG P P P+ G
Sbjct: 1309 GPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGP-------PGPSGEAGPPGPPGK 1361
Query: 252 EGVPGS 257
G PG+
Sbjct: 1362 RGPPGA 1367
Score = 31.6 bits (70), Expect = 0.76
Identities = 61/247 (24%), Positives = 83/247 (33%), Gaps = 24/247 (9%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 76
PG++ +S A L P GP G G P+G G +G + G G
Sbjct: 735 PGKEGQSGEKGA---LGPPGPQGPIGYPGPRGVKGADGVRGLK-GSKGEKGEDGFPGFKG 790
Query: 77 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSP--ERVKRTTCPVLQIEAFAGR 134
+ L + ++ + G PR G P + ++ V + + GR
Sbjct: 791 DMGLKGDRGEVGQIG--PRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGR 848
Query: 135 DIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGP 193
G KG G G E G GK R G R GP G+PGP
Sbjct: 849 Q-GPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGAR-----GPTGKPGP 902
Query: 194 VGCACEVSSSGAGPAAAV-DRGGPCTSAPAA-PGNLSPDSRLLQNPLPAH--LTANFASE 249
G +S G GP +RG P PG P ++ LP H +
Sbjct: 903 KG-----TSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ 957
Query: 250 GLEGVPG 256
G G PG
Sbjct: 958 GKTGPPG 964
Score = 30.4 bits (67), Expect = 1.7
Identities = 68/267 (25%), Positives = 83/267 (31%), Gaps = 32/267 (11%)
Query: 8 GRDALALPRPGRKRRSQALKASDPLSPG---GPAGKGGAGDPQGAGADPGNQGHRCGRMG 64
G+D L PG++ + + P PG GP G G P G PG G G G
Sbjct: 940 GKDGLP-GHPGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPP-GEQG 997
Query: 65 VTEAARLQAHTSHISLLSEGAKMHRWG--SLPRNRGARRI-ATPGL-GARASRSPERVKR 120
+ AA + K G P RG PGL G + P
Sbjct: 998 LPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPP--GP 1055
Query: 121 TTCPVLQIEAFAGRDIGKKGGEGVQRKVGTA-EFGISAETGKKINRSTSYMQSHGNCLGK 179
P + A IG G G Q G A E G E G + +Q G
Sbjct: 1056 VGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGP 1115
Query: 180 RKWQRLGPLGQPGPVGCACEVSSSGA----------GPAAAVDRGGPCTSAPAAPGNLSP 229
GP G PG G E+ G GP GP + A G+ P
Sbjct: 1116 -----AGPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEP 1170
Query: 230 DSRLLQNPLPAHLTANFASEGLEGVPG 256
R Q + EG G PG
Sbjct: 1171 GPRGQQG-----MFGQKGDEGARGFPG 1192
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 39.7 bits (91), Expect = 0.003
Identities = 64/247 (25%), Positives = 85/247 (34%), Gaps = 43/247 (17%)
Query: 32 LSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWG 91
+ P GP G GA PQG G G G+ G A K R G
Sbjct: 96 MGPRGPPGAAGAPGPQGFQGPAGEPGEP-GQTGPAGARGPAGPPGKAGEDGHPGKPGRPG 154
Query: 92 --SLPRNRGARRI-ATPGL----GARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGV 144
+ +GAR TPGL G R + +K G+ G GV
Sbjct: 155 ERGVVGPQGARGFPGTPGLPGFKGIRGHNGLDGLK-----------------GQPGAPGV 197
Query: 145 QRKVGT-AEFGISAETGKK-INRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSS 202
+ + G E G +TG + + + + G + +GP+G GP+G A
Sbjct: 198 KGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGF 257
Query: 203 SGA----GPAAAVDRGGPCTSA--------PAAPGNLSPDSRLLQNPLPAHLTANFASEG 250
GA G AV GP A P G + P NP LT + G
Sbjct: 258 PGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPG----NPGANGLTGAKGAAG 313
Query: 251 LEGVPGS 257
L GV G+
Sbjct: 314 LPGVAGA 320
Score = 38.9 bits (89), Expect = 0.005
Identities = 60/243 (24%), Positives = 75/243 (30%), Gaps = 24/243 (9%)
Query: 16 RPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHT 75
R G + A+ A P G G+ GA P G G+ G R G +G
Sbjct: 671 RDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGER-GEVGPAGPNGFAGPA 729
Query: 76 SHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRD 135
GAK R P+ T +GA P
Sbjct: 730 GAAG--QPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPP---------------- 771
Query: 136 IGKKGGEGVQRKVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPV 194
G G G G F G + TG S GK + GP G GPV
Sbjct: 772 -GPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLR--GPRGDQGPV 828
Query: 195 GCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGV 254
G EV + G P A ++G + A P LL P L + GL GV
Sbjct: 829 GRTGEVGAVGP-PGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGV 887
Query: 255 PGS 257
G+
Sbjct: 888 AGA 890
Score = 32.7 bits (73), Expect = 0.34
Identities = 59/250 (23%), Positives = 78/250 (31%), Gaps = 32/250 (12%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 76
PG K A+ + P P GP G+ G G PGN G G G AA L
Sbjct: 261 PGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGAN-GLTGAKGAAGLPGVAG 319
Query: 77 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDI 136
L G+ + PG S + E +
Sbjct: 320 APGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKG----------EPGSAGPQ 369
Query: 137 GKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVG 195
G G G + K G E G + G R + + G R G +G PG G
Sbjct: 370 GPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADG-----RAGVMGPPGSRG 424
Query: 196 CACEVSSSG----AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGL 251
+ G AG GP P +PGN+ P + LP G+
Sbjct: 425 ASGPAGVRGPNGDAGRPGEPGLMGP-RGLPGSPGNIGPAGKEGPVGLP----------GI 473
Query: 252 EGVPGSCFPS 261
+G PG P+
Sbjct: 474 DGRPGPIGPA 483
Score = 31.2 bits (69), Expect = 0.99
Identities = 56/221 (25%), Positives = 70/221 (31%), Gaps = 35/221 (15%)
Query: 6 RRGRDALALPR--PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRM 63
R G L PR PG P+ G G+ G P GA +PGN G G
Sbjct: 440 RPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNIGFP-GPK 498
Query: 64 GVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATP-----GLGARASRSPERV 118
G T H L G N GA+ P G G + P
Sbjct: 499 GPTGDPGKNGDKGHAGLAGARGAPGPDG----NNGAQGPPGPQGVQGGKGEQGPPGPPGF 554
Query: 119 KRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINR---STSYMQSHGN 175
+ P + ++GK G G+ EFG+ G + R S
Sbjct: 555 QGLPGP-----SGPAGEVGKPGERGLH-----GEFGLPGPAGPRGERGPPGESGAAGPTG 604
Query: 176 CLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGP 216
+G R GP G PGP G + G AV GP
Sbjct: 605 PIGSR-----GPSGPPGPDG-----NKGEPGVVGAVGTAGP 635
Score = 30.4 bits (67), Expect = 1.7
Identities = 57/248 (22%), Positives = 79/248 (31%), Gaps = 57/248 (22%)
Query: 9 RDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEA 68
R + P P R S + P GPAG G+ P G PG +G G +G
Sbjct: 222 RGRVGAPGPAGARGSDG-----SVGPVGPAGPIGSAGPPGFPGAPGPKG-EIGAVGNAGP 275
Query: 69 ARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQI 128
A + L + P N GA + GA+ + +
Sbjct: 276 AGPAGPRGEVGLPGLSGPV----GPPGNPGANGLT----GAKGAAG-------------L 314
Query: 129 EAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPL 188
AG G G G+ VG A TG + G +
Sbjct: 315 PGVAGAP-GLPGPRGIPGPVGAA-----GATGAR-----------------------GLV 345
Query: 189 GQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFAS 248
G+PGP G E + G P +A +G P S + ++ P P L + S
Sbjct: 346 GEPGPAGSKGESGNKGE-PGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGS 404
Query: 249 EGLEGVPG 256
GL G G
Sbjct: 405 RGLPGADG 412
Score = 28.9 bits (63), Expect = 4.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 29 SDPLSPGGPAGKGGAGDPQGAGADPGNQGHR 59
S P+ P G G G PQG D G G +
Sbjct: 984 SGPVGPAGAVGPRGPSGPQGIRGDKGEPGEK 1014
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 38.9 bits (89), Expect = 0.005
Identities = 66/251 (26%), Positives = 88/251 (35%), Gaps = 40/251 (15%)
Query: 34 PGGPAG-------KGGAGDP--QGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEG 84
P GPAG +GGAG+P GA +PG +G R G G+ + E
Sbjct: 415 PPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGER-GEAGIPGVPGAKGEDGKDGSPGEP 473
Query: 85 AKMHRWGSLPRNRGARRIATPGL-------GARASRSPERVKRTTCPVLQIEAFA--GRD 135
LP G R PG G + P + P A GRD
Sbjct: 474 GA----NGLPGAAGER--GAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRD 527
Query: 136 IGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVG 195
G GG G++ G+ G GK + G GP GQPG +G
Sbjct: 528 -GVPGGPGMRGMPGSP--GGPGSDGKPGPPGSQGESGRPGPPGPS-----GPRGQPGVMG 579
Query: 196 CACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHL------TANFASE 249
+ GA P +RGGP P P + ++ P P T +
Sbjct: 580 FPGPKGNDGA-PGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQ 638
Query: 250 GLEGVPGSCFP 260
GL+G+PG+ P
Sbjct: 639 GLQGLPGTGGP 649
Score = 35.8 bits (81), Expect = 0.040
Identities = 73/258 (28%), Positives = 86/258 (33%), Gaps = 53/258 (20%)
Query: 28 ASDPLSPG-----GPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLS 82
A P SPG GPAG G+ G +PG QGH G G + S
Sbjct: 341 AGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGH-AGAQGPPGPPGING--------S 391
Query: 83 EGAKMHRW-GSLPRNRGARRIATPGL-GARASRSPERVKRTTCPVLQIEAFAGRDIGKKG 140
G K +P PGL GAR P P L+ A G KG
Sbjct: 392 PGGKGEMGPAGIP--------GAPGLMGARGPPGP--AGANGAPGLRGGAGEPGKNGAKG 441
Query: 141 GEGVQRKVGTAEF----GISAETGKKINRSTSYMQSHGNCLGKRKWQRL----GPLGQPG 192
G + + G A G E GK + G+R GP G PG
Sbjct: 442 EPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPG 501
Query: 193 PVGCACEVSSSG-AGPAAAVDR-------GGP-CTSAPAAPGNLSPDSRLLQNPLPAHLT 243
G A E + G AGP A GGP P +PG D + P P
Sbjct: 502 EKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGK----PGPP--- 554
Query: 244 ANFASEGLEGVPGSCFPS 261
S+G G PG PS
Sbjct: 555 ---GSQGESGRPGPPGPS 569
Score = 35.0 bits (79), Expect = 0.069
Identities = 68/246 (27%), Positives = 87/246 (35%), Gaps = 50/246 (20%)
Query: 31 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 90
P SPG KG AG P G PG QG G G A +
Sbjct: 914 PGSPGVSGPKGDAGQP-GEKGSPGAQGPP-GAPGPLGIAGIT------------------ 953
Query: 91 GSLPRNRGARRIA-TPGL-GARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKV 148
GAR +A PG+ G R S P+ VK + + A G++G G Q
Sbjct: 954 -------GARGLAGPPGMPGPRGSPGPQGVKGESG-----KPGANGLSGERGPPGPQGLP 1001
Query: 149 GTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ----------RLGPLGQPGPVGCAC 198
G A G + E G+ N + + G + + G G PGPVG A
Sbjct: 1002 GLA--GTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAG 1059
Query: 199 EVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSP--DSRLLQNPLPAHLTANFASEGLEGVP 255
+ G +GPA GP S APG P D A + + G G P
Sbjct: 1060 KSGDRGESGPAGPAGAPGPAGSR-GAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAP 1118
Query: 256 GSCFPS 261
GS P+
Sbjct: 1119 GSPGPA 1124
Score = 31.6 bits (70), Expect = 0.76
Identities = 61/231 (26%), Positives = 72/231 (31%), Gaps = 33/231 (14%)
Query: 34 PGGPAGKGGAGDP--QGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWG 91
PG GKG AG P GA PG QG R G+ +G K G
Sbjct: 701 PGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPG------------PKGDKGEPGG 748
Query: 92 ----SLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRK 147
+P G R P + P P L A G++G G
Sbjct: 749 PGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGP 808
Query: 148 VG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQR-LGPLGQPGPVGCACEVSSSGA 205
G G + E G K R + G G GP G PGP G E S G
Sbjct: 809 AGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGG 868
Query: 206 GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
AA P + GN P P P+ S G +G PG
Sbjct: 869 PGAAGFPGARGLPGPPGSNGNPGP-------PGPS------GSPGKDGPPG 906
Score = 31.2 bits (69), Expect = 0.99
Identities = 24/79 (30%), Positives = 27/79 (34%), Gaps = 10/79 (12%)
Query: 186 GPLGQPGPVGCACEVSSSGA----GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAH 241
GP G PGP G G G + G C S P P N SP
Sbjct: 106 GPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYD------ 159
Query: 242 LTANFASEGLEGVPGSCFP 260
+ + A GL G PG P
Sbjct: 160 VKSGVAVGGLAGYPGPAGP 178
Score = 31.2 bits (69), Expect = 0.99
Identities = 52/190 (27%), Positives = 59/190 (31%), Gaps = 35/190 (18%)
Query: 31 PLSPGGPAGKG---GAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKM 87
P P GPAGK G P G PG G R G G + T + G K
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSR-GAPGPQGPRGDKGETGERG--AAGIKG 1107
Query: 88 HRWGSLPRNRGARRIATPG--LGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQ 145
HR P N GA P GA S P + P G G +G
Sbjct: 1108 HR--GFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGP-----------SGPPGKDGTS 1154
Query: 146 RKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGA 205
G G G + R + H + GP G PG G C G
Sbjct: 1155 GHPG--PIGPPGPRGNRGERGSEGSPGHPG--------QPGPPGPPGAPGPCC----GGV 1200
Query: 206 GPAAAVDRGG 215
G AA GG
Sbjct: 1201 GAAAIAGIGG 1210
Score = 29.6 bits (65), Expect = 2.9
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 186 GPLGQPGPVGCACEVSSSGA----GPAAAVDRGGPCTSAPAAPGNLSP 229
GP G PGP G + S G+ GP + GP + P PG + P
Sbjct: 177 GPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGP-SGPPGPPGAIGP 223
Score = 28.1 bits (61), Expect = 8.4
Identities = 70/292 (23%), Positives = 90/292 (30%), Gaps = 60/292 (20%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAG------------------DPQGAGADPGNQGH 58
PG+ S + P GPAGK G P G PG +GH
Sbjct: 206 PGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGH 265
Query: 59 -----RCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGL-GARAS 112
R G G T A L+ L E G PR R PGL GA +
Sbjct: 266 RGFDGRNGEKGETGAPGLKGEN---GLPGENGAPGPMG--PRGAPGER-GRPGLPGAAGA 319
Query: 113 RSPERVKRTTCPVLQIEAFAG-----RDIGKKGGEGVQRKVGTAEFGISAETGKKINRST 167
R + + + + G G G G + +VG A G G R
Sbjct: 320 RGNDGARGS-------DGQPGPPGPPGTAGFPGSPGAKGEVGPA--GSPGSNGAPGQRGE 370
Query: 168 SYMQSH-------------GNCLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDRG 214
Q H G+ GK + G G PG +G +GA A + G
Sbjct: 371 PGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGG 430
Query: 215 GPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGSCFPSCGTLP 266
A G P + +P A +G +G PG P LP
Sbjct: 431 AGEPGKNGAKGEPGPRGERGEAGIPGVPGAK-GEDGKDGSPGE--PGANGLP 479
>gi|239745938 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 38.9 bits (89), Expect = 0.005
Identities = 38/116 (32%), Positives = 46/116 (39%), Gaps = 24/116 (20%)
Query: 11 ALALPRPGRKRR------SQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMG 64
A LP+P R+RR S+ + S P+ P G GGAG GAGA +
Sbjct: 191 AWRLPQPRRRRRPTCPCCSRCRELSPPMGPDLGGGGGGAGAGAGAGAG--------AQRS 242
Query: 65 VTEAARLQAHTSHISLLSE---GAKMHR-------WGSLPRNRGARRIATPGLGAR 110
EAA + L+SE G K R WG L G R A G G R
Sbjct: 243 AAEAAGCLGCLPRLPLMSEPRTGEKGKRRRRDGRGWGGLRGRAGGPRSAEAGGGKR 298
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 38.9 bits (89), Expect = 0.005
Identities = 61/235 (25%), Positives = 73/235 (31%), Gaps = 25/235 (10%)
Query: 30 DPLSPGGP--AGKGGAGDPQGAGADPGNQG-HRCGRMGVTEAARLQAHTSHISLLSEGAK 86
DP PG P AG G P G +PG G G G T A L L+
Sbjct: 2184 DPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGS 2243
Query: 87 MHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQR 146
LP G PG R S + R + V G +G KG G
Sbjct: 2244 ----PGLPGQVG--ETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPG-PVGPKGEPGPTG 2296
Query: 147 KVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSG-- 204
G A G+ G+K G K GP G+ G G A E G
Sbjct: 2297 APGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGED 2356
Query: 205 ---AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
P +G P P +PG P P + + GL G PG
Sbjct: 2357 GQKGAPGPKGFKGDPGVGVPGSPG----------PPGPPGVKGDLGLPGLPGAPG 2401
Score = 38.1 bits (87), Expect = 0.008
Identities = 67/238 (28%), Positives = 80/238 (33%), Gaps = 36/238 (15%)
Query: 34 PGGPAGKGGAGDPQGAGADPGNQG-----HRCGRMGVTEAARLQAHTSHISLLSEGAKMH 88
PG G+ G P G +PG G R G GV EA R E +
Sbjct: 2017 PGLALGERGPPGPSGLAGEPGKPGIPGLPGRAG--GVGEAGR-PGERGERGEKGERGEQG 2073
Query: 89 RWG--SLPRNRGAR-------RIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKK 139
R G LP G + PG G + P +K + E + D G K
Sbjct: 2074 RDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGA-----KGEPGSNGDQGPK 2128
Query: 140 GGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACE 199
G GV G + G G+ N + GK Q GP G PGPVG +
Sbjct: 2129 GDRGVPGIKG--DRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQ--GPRGPPGPVGGHGD 2184
Query: 200 VSSSGA-GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
GA G A GP + PG P R L P A GL G PG
Sbjct: 2185 PGPPGAPGLAGPAGPQGP-SGLKGEPGETGPPGRGLTGPTGA--------VGLPGPPG 2233
Score = 34.3 bits (77), Expect = 0.12
Identities = 64/215 (29%), Positives = 75/215 (34%), Gaps = 29/215 (13%)
Query: 10 DALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAG--ADPGNQGHRCGRMGVTE 67
D+ A R GR A L P GP G G P G G PG G + G G T
Sbjct: 1861 DSGASGREGRDGPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPK-GDRGETG 1919
Query: 68 AARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRS-PERVKRTTCPVL 126
+ Q L E GS+P R + T G+ A A R E ++ L
Sbjct: 1920 SKGEQGLPGERGLRGEP------GSVP--NVDRLLETAGIKASALREIVETWDESSGSFL 1971
Query: 127 QIEAFAGRDIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQS-HGNCLGKRKWQR 184
+ R G KG G Q G G E G K +R Q G LG+R
Sbjct: 1972 PVPE---RRRGPKGDSGEQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGER---- 2024
Query: 185 LGPLGQPGPVGCACEVSSSG----AGPAAAVDRGG 215
G PGP G A E G G A V G
Sbjct: 2025 ----GPPGPSGLAGEPGKPGIPGLPGRAGGVGEAG 2055
Score = 30.4 bits (67), Expect = 1.7
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 16 RPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR 59
RPG R A +P +PG P KG G P G DPG +G R
Sbjct: 1306 RPGSPGR-----AGNPGTPGAPGLKGSPGLP-GPRGDPGERGPR 1343
Score = 30.4 bits (67), Expect = 1.7
Identities = 52/222 (23%), Positives = 78/222 (35%), Gaps = 27/222 (12%)
Query: 31 PLSPGGPAGKGGAGDPQGAGADPGNQG--HRCGRMGVTEAARLQAHTSHISLLSEGAKMH 88
P P GP G+ G +G PG+ G + G G+ A ++ + +
Sbjct: 1623 PPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDG 1682
Query: 89 RWGSLPRNRGAR-------------RIATPGLGARASRSP-ERVKRTTCPVLQIEAFAGR 134
R GS P + G + R+ G GAR P +R + G
Sbjct: 1683 RNGS-PGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGA 1741
Query: 135 DIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGP 193
G++G EG + G + G+ G+K +R + GK G G GP
Sbjct: 1742 P-GERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKP-----GAAGPSGP 1795
Query: 194 VGCACEVSSSGAG--PAAAVDRGGPCTSA-PAAPGNLSPDSR 232
G A + G P ++G P S P PG D +
Sbjct: 1796 NGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPGLPGKPGEDGK 1837
Score = 29.3 bits (64), Expect = 3.8
Identities = 57/234 (24%), Positives = 83/234 (35%), Gaps = 31/234 (13%)
Query: 7 RGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVT 66
+G A+ L PG + A + GP G G P+G DPG++G + G G
Sbjct: 2519 KGDSAVILGPPGPRG------AKGDMGERGPRGLDGDKGPRGDNGDPGDKGSK-GEPGDK 2571
Query: 67 EAARLQAHTSHISLLSE-GAKMHRWGSLPRNRGA-RRIATPGLGARASRSPERVKRTTCP 124
+A L + + GA +P + G+ + PG+ R
Sbjct: 2572 GSAGLPGLRGLLGPQGQPGA-----AGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKG 2626
Query: 125 VLQIEAFAGRD--IGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKW 182
++ G D G KG G + G A G E G+ S +G +
Sbjct: 2627 ERGVKGACGLDGEKGDKGEAGPPGRPGLA--GHKGEMGEPGVPGQSGAPGKEGLIGPKGD 2684
Query: 183 QRLGPLGQPGPVGCACEVSSSGA-------GPAAAVDRGGPCTSAPAAPGNLSP 229
+ G GQPGP G E G GP+ GP P PG++ P
Sbjct: 2685 R--GFDGQPGPKGDQGEKGERGTPGIGGFPGPSGNDGSAGP----PGPPGSVGP 2732
Score = 28.9 bits (63), Expect = 4.9
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 14 LPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPG 54
LP P R + +A +A +P PG KG G P+G DPG
Sbjct: 2334 LPGP-RGEKGEAGRAGEPGDPGEDGQKGAPG-PKGFKGDPG 2372
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 38.9 bits (89), Expect = 0.005
Identities = 60/237 (25%), Positives = 80/237 (33%), Gaps = 41/237 (17%)
Query: 30 DPLSPGGPAG-KGGAGDP--QGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAK 86
DP P GP G KG +G P +G G PG G + + E L EG
Sbjct: 468 DPGGPPGPKGDKGSSGIPGKEGPGGKPGKPGVKGEKGDPCEVC---------PTLPEG-- 516
Query: 87 MHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTC-PVLQIEAFAGRD--IGKKGGEG 143
+ LP G + + AR + +K P L + G + G G
Sbjct: 517 FQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLVSSTGASG 576
Query: 144 VQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSS 203
VG+ FG+ G+ G K + GP G PGP G
Sbjct: 577 ---DVGSPGFGLPGLPGRA--------GVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIK 625
Query: 204 GAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGSCFP 260
GA +G PC PA D R++ P P+ +G G PG P
Sbjct: 626 GA-------KGEPCEPCPALSNLQDGDVRVVALPGPS------GEKGEPGPPGFGLP 669
Score = 37.0 bits (84), Expect = 0.018
Identities = 63/253 (24%), Positives = 79/253 (31%), Gaps = 35/253 (13%)
Query: 34 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMG--------VTEAARLQAHTSHISLLSEGA 85
PG P KG GDP A DPG QG + G G V A L + T G+
Sbjct: 524 PGKPGPKGEPGDPVPARGDPGIQGIK-GEKGEPCLSCSSVVGAQHLVSSTGASG--DVGS 580
Query: 86 KMHRWGSLPRNRG-------------ARRIATPG----LGARASRSPERVKRTTCPVLQ- 127
LP G A +PG +G + + CP L
Sbjct: 581 PGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSN 640
Query: 128 IEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ---- 183
++ R + G G + + G FG+ + GK R + G
Sbjct: 641 LQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTG 700
Query: 184 RLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLT 243
R G G+PG G A G G A G T PG P Q P
Sbjct: 701 RPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGE--QGPEGVGRP 758
Query: 244 ANFASEGLEGVPG 256
GL GV G
Sbjct: 759 GKPGQPGLPGVQG 771
Score = 37.0 bits (84), Expect = 0.018
Identities = 72/271 (26%), Positives = 89/271 (32%), Gaps = 48/271 (17%)
Query: 12 LALPRPGRKRRSQALKASDPLSPG----GPAGKGGAGDPQGAGADPGNQGH-----RCGR 62
+ALP P ++ +P PG G GK G +G D GN G GR
Sbjct: 649 VALPGPSGEK-------GEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGR 701
Query: 63 MGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGA--RRIATPGL-GARASRSPERVK 119
G++ +Q +G K + P +G PG G + + PE V
Sbjct: 702 PGLSGEPGVQGPAG-----PKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVG 756
Query: 120 RTTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGK 179
R P G+ G GVQ G G+ E G R Q G
Sbjct: 757 RPGKP------------GQPGLPGVQGPPGLK--GVQGEPGPP-GRGVQGPQGEPGAPGL 801
Query: 180 RKWQRL-GPLGQPGPVGCACEVSSSGA-GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNP 237
Q L GP G PGP G S G G V G S P + L P
Sbjct: 802 PGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQTGLRGTP 861
Query: 238 LPAHLTANFASEGLEGVPGSC-FPSCGTLPF 267
G +G PG C PS G L F
Sbjct: 862 ------GEKGPRGEKGEPGECSCPSQGDLIF 886
Score = 30.4 bits (67), Expect = 1.7
Identities = 53/211 (25%), Positives = 76/211 (36%), Gaps = 44/211 (20%)
Query: 32 LSPGGPAGKGGAGD-----PQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAK 86
L+P GP KGG G+ P G+ + G +G+ C R ++ A LQ +EG K
Sbjct: 330 LAPSGP--KGGKGERGLPGPPGSKGEKGARGNDCVR--ISPDAPLQC--------AEGPK 377
Query: 87 MHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRD--------IGK 138
+ S GA + GL ++ ++ + + GRD IG
Sbjct: 378 GEKGES-----GA--LGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVIGP 430
Query: 139 KGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC 198
KG +G VG G++ E G G L GP G G G +
Sbjct: 431 KGQKGDPGFVGPE--GLAGEPG-----PPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSG 483
Query: 199 EVSSSGAG-----PAAAVDRGGPCTSAPAAP 224
G G P ++G PC P P
Sbjct: 484 IPGKEGPGGKPGKPGVKGEKGDPCEVCPTLP 514
Score = 28.9 bits (63), Expect = 4.9
Identities = 60/235 (25%), Positives = 80/235 (34%), Gaps = 39/235 (16%)
Query: 34 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSL 93
P GPAG G PQG + G+QG + G+ G + S G
Sbjct: 1130 PPGPAGPRGERGPQGNSGEKGDQGFQ-GQPGFPGPPGPPGFPGKVG--SPGPP-----GP 1181
Query: 94 PRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEF 153
+G+ I P G S P P ++ G+D GK G G G
Sbjct: 1182 QAEKGSEGIRGPS-GLPGSPGPPGPPGIQGPA-GLDGLDGKD-GKPGLRGDPGPAGPP-- 1236
Query: 154 GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDR 213
G+ G K H G + G G+PGP G + G P A +
Sbjct: 1237 GLMGPPGFK------GKTGHPGLPGPK-----GDCGKPGPPGSTGRPGAEGE-PGAMGPQ 1284
Query: 214 GGPCTSAPAAPGNLSPDSRLLQNPLPAHLTA--------NFASEGLEGVPGSCFP 260
G P PG++ P Q P PA ++A GL G+PG P
Sbjct: 1285 G-----RPGPPGHVGPPGPPGQ-PGPAGISAVGLKGDRGATGERGLAGLPGQPGP 1333
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 38.5 bits (88), Expect = 0.006
Identities = 76/293 (25%), Positives = 98/293 (33%), Gaps = 47/293 (16%)
Query: 6 RRGRDALALPR-----PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQG--- 57
+RGR+ PR PG + + A +P P GP G G+ P+G+ PG QG
Sbjct: 622 QRGREGPMGPRGEAGPPGSGEKGERGAAGEP-GPHGPPGVPGSVGPKGSSGSPGPQGPPG 680
Query: 58 -----------------HRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSL--PRNRG 98
G MG Q L E G++ P +G
Sbjct: 681 PVGLQGLRGEVGLPGVKGDKGPMGPPGPKGDQGEKGPRGLTGEPGMRGLPGAVGEPGAKG 740
Query: 99 ARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVG----TAEFG 154
A A P G + R + + T P ++ D GK G G Q G G
Sbjct: 741 AMGPAGPD-GHQGPRGEQGL--TGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPG 797
Query: 155 ISAETGKK----INRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCA-----CEVSSSGA 205
I E G + +S + G GP G PGP G A EV +
Sbjct: 798 IKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQG 857
Query: 206 GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNP--LPAHLTANFASEGLEGVPG 256
P RG P S P PG P L P P +N + L G PG
Sbjct: 858 PPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLSN-SETFLSGPPG 909
Score = 29.3 bits (64), Expect = 3.8
Identities = 42/173 (24%), Positives = 60/173 (34%), Gaps = 42/173 (24%)
Query: 34 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSL 93
PG P +G GD + D H G + ++ ++ +S+ S +S G
Sbjct: 1267 PGPPGPQGPPGDSRLLSTDAS---HSRGSSSSSHSSSVRRGSSYSSSMSTGGG------- 1316
Query: 94 PRNRGARRIATPGLGARAS--RSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGT- 150
GA + G A+ R P G DIG GG G + G
Sbjct: 1317 ----GAGSLGAGGAFGEAAGDRGPY----------------GTDIGPGGGYGAAAEGGMY 1356
Query: 151 --------AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVG 195
A+F + + R + MQ G G + GP GQPGP G
Sbjct: 1357 AGNGGLLGADFAGDLDYNELAVRVSESMQRQGLLQGMA-YTVQGPPGQPGPQG 1408
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 38.1 bits (87), Expect = 0.008
Identities = 61/232 (26%), Positives = 76/232 (32%), Gaps = 40/232 (17%)
Query: 34 PGGPAGKGGAGDPQGAGADPGNQGHR-----CGRMGVTEAARLQAHTSHISLLSEGAKMH 88
P GP G+ G P GA + G G + GR GV L + E
Sbjct: 942 PIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKG 1001
Query: 89 RWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKV 148
G P +G + G + P PV Q A AG D G+ G G Q
Sbjct: 1002 EVGD-PGQKGTK-------GNKGEHGPPGPPGPIGPVGQPGA-AGAD-GEPGARGPQ--- 1048
Query: 149 GTAEFGISAETGKKINRS----TSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSG 204
FG + G + G K + +GP+G PGP G
Sbjct: 1049 --GHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPG-----PRGP 1101
Query: 205 AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
AGP A GP P GNL P P S G++G PG
Sbjct: 1102 AGPNGADGPQGP----PGGVGNLGP-------PGEKGEPGESGSPGIQGEPG 1142
Score = 35.0 bits (79), Expect = 0.069
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGV 65
PG+K AS P+ PGGP G G P+GA G G + G GV
Sbjct: 1354 PGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPK-GEKGV 1401
Score = 34.7 bits (78), Expect = 0.090
Identities = 57/219 (26%), Positives = 73/219 (33%), Gaps = 37/219 (16%)
Query: 28 ASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKM 87
A P S G GKG GDP GA PG + G +G A L +
Sbjct: 1237 AGSPGSEGRQGGKGAKGDPGAIGA-PG----KTGPVGPAGPAGKPGPDGLRGLPGSVGQQ 1291
Query: 88 HRWGSLPRNRGARRIATPGL-GARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQR 146
R G+ + + PGL G R D G KG +G
Sbjct: 1292 GRPGATGQAGPPGPVGPPGLPGLRG-----------------------DAGAKGEKGHPG 1328
Query: 147 KVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ-RLGPLGQPGPVGCACEVSSSGA 205
+G G E G+K +R Q G+ GP+G GP G GA
Sbjct: 1329 LIGL--IGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA 1386
Query: 206 GPAAAVDRGGPC--TSAPAAPGNLSPDSRLLQNPLPAHL 242
A GGP PG+ P ++Q PLP +
Sbjct: 1387 --KGATGPGGPKGEKGVQGPPGHPGPPGEVIQ-PLPIQM 1422
Score = 33.5 bits (75), Expect = 0.20
Identities = 58/229 (25%), Positives = 75/229 (32%), Gaps = 32/229 (13%)
Query: 31 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 90
P+ P GP G G P GA G G G +G + + E
Sbjct: 1089 PMGPPGPPGPRGPAGPNGADGPQGPPG-GVGNLGPPGEKGEPGESGSPGIQGEPGVKGPR 1147
Query: 91 GSLPRNRGARRIATPG-LGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVG 149
G + + PG G + + K PV F G D G G G + + G
Sbjct: 1148 GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPV----GFPG-DPGPPGEGGPRGQDG 1202
Query: 150 T-AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPA 208
+ G E G+ + + LGKR GP G PG G G G
Sbjct: 1203 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR-----GPAGSPGSEG-----RQGGKGA- 1251
Query: 209 AAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGS 257
+G P A APG P PA +GL G+PGS
Sbjct: 1252 ----KGDP--GAIGAPGKTGPVG-------PAGPAGKPGPDGLRGLPGS 1287
Score = 31.6 bits (70), Expect = 0.76
Identities = 63/239 (26%), Positives = 80/239 (33%), Gaps = 30/239 (12%)
Query: 34 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSL 93
P G G G PQG PG +G + GV L+ H E G +
Sbjct: 612 PPGTKGNQGPSGPQGPLGYPGPRGVK----GVDGIRGLKGHKGE---KGEDGFPGFKGDI 664
Query: 94 PRNRGARRIATPGLGARASRSPERVKRTTCPV-------LQIEAFAGRDIGKKGGEGVQR 146
+ P G+R PE K T P L E G G G Q
Sbjct: 665 GVKGDRGEVGVP--GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQG 722
Query: 147 KVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGC----ACEVS 201
G+ F G +G+K R S G + + GP GQ GP G + +
Sbjct: 723 PKGSLGFPGFPGASGEKGARGLS-----GKSGPRGERGPTGPRGQRGPRGATGKSGAKGT 777
Query: 202 SSGAGP-AAAVDRGGPCTSAP-AAPGNLSPDSRLLQNPLPAH--LTANFASEGLEGVPG 256
S G GP +RG P P PG P ++ LP H +G G PG
Sbjct: 778 SGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPG 836
Score = 30.8 bits (68), Expect = 1.3
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 186 GPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTAN 245
GP G PGP G E ++G+G G P P P + + + P T
Sbjct: 920 GPSGPPGPAGSPGERGAAGSGGPI----GPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGR 975
Query: 246 FASEGLEGVPGSCFP 260
+G G+PG P
Sbjct: 976 DGVQGPVGLPGPAGP 990
Score = 29.6 bits (65), Expect = 2.9
Identities = 62/245 (25%), Positives = 75/245 (30%), Gaps = 68/245 (27%)
Query: 34 PGGPAGKGGAGD--------PQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGA 85
PG P KG +GD PQG PG G R GR G A + G
Sbjct: 418 PGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR-GRAGADGARGMPG--------DPGV 468
Query: 86 KMHR----WGSLPRNRGAR-RIATPGLGARASRSPERVKRTTCPVLQIEAFAGRD--IGK 138
K R LP +G R GL ER + +G +G
Sbjct: 469 KGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGP 528
Query: 139 KGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC 198
KG G+ G G+ G K LGP G+PGP G
Sbjct: 529 KGPPGIPGPPGVR--GMDGPQGPK--------------------GSLGPQGEPGPPGQQG 566
Query: 199 EVSSSG-AGPAAAVDRGGP-----CTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLE 252
+ G GP A+ G P PG+ P P H G E
Sbjct: 567 TPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGP---------PGH-------PGKE 610
Query: 253 GVPGS 257
G PG+
Sbjct: 611 GPPGT 615
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 38.1 bits (87), Expect = 0.008
Identities = 61/232 (26%), Positives = 76/232 (32%), Gaps = 40/232 (17%)
Query: 34 PGGPAGKGGAGDPQGAGADPGNQGHR-----CGRMGVTEAARLQAHTSHISLLSEGAKMH 88
P GP G+ G P GA + G G + GR GV L + E
Sbjct: 921 PIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKG 980
Query: 89 RWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKV 148
G P +G + G + P PV Q A AG D G+ G G Q
Sbjct: 981 EVGD-PGQKGTK-------GNKGEHGPPGPPGPIGPVGQPGA-AGAD-GEPGARGPQ--- 1027
Query: 149 GTAEFGISAETGKKINRS----TSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSG 204
FG + G + G K + +GP+G PGP G
Sbjct: 1028 --GHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPG-----PRGP 1080
Query: 205 AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
AGP A GP P GNL P P S G++G PG
Sbjct: 1081 AGPNGADGPQGP----PGGVGNLGP-------PGEKGEPGESGSPGIQGEPG 1121
Score = 35.0 bits (79), Expect = 0.069
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGV 65
PG+K AS P+ PGGP G G P+GA G G + G GV
Sbjct: 1333 PGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPK-GEKGV 1380
Score = 34.7 bits (78), Expect = 0.090
Identities = 57/219 (26%), Positives = 73/219 (33%), Gaps = 37/219 (16%)
Query: 28 ASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKM 87
A P S G GKG GDP GA PG + G +G A L +
Sbjct: 1216 AGSPGSEGRQGGKGAKGDPGAIGA-PG----KTGPVGPAGPAGKPGPDGLRGLPGSVGQQ 1270
Query: 88 HRWGSLPRNRGARRIATPGL-GARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQR 146
R G+ + + PGL G R D G KG +G
Sbjct: 1271 GRPGATGQAGPPGPVGPPGLPGLRG-----------------------DAGAKGEKGHPG 1307
Query: 147 KVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ-RLGPLGQPGPVGCACEVSSSGA 205
+G G E G+K +R Q G+ GP+G GP G GA
Sbjct: 1308 LIGL--IGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA 1365
Query: 206 GPAAAVDRGGPC--TSAPAAPGNLSPDSRLLQNPLPAHL 242
A GGP PG+ P ++Q PLP +
Sbjct: 1366 --KGATGPGGPKGEKGVQGPPGHPGPPGEVIQ-PLPIQM 1401
Score = 33.5 bits (75), Expect = 0.20
Identities = 58/229 (25%), Positives = 75/229 (32%), Gaps = 32/229 (13%)
Query: 31 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 90
P+ P GP G G P GA G G G +G + + E
Sbjct: 1068 PMGPPGPPGPRGPAGPNGADGPQGPPG-GVGNLGPPGEKGEPGESGSPGIQGEPGVKGPR 1126
Query: 91 GSLPRNRGARRIATPG-LGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVG 149
G + + PG G + + K PV F G D G G G + + G
Sbjct: 1127 GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPV----GFPG-DPGPPGEGGPRGQDG 1181
Query: 150 T-AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPA 208
+ G E G+ + + LGKR GP G PG G G G
Sbjct: 1182 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR-----GPAGSPGSEG-----RQGGKGA- 1230
Query: 209 AAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGS 257
+G P A APG P PA +GL G+PGS
Sbjct: 1231 ----KGDP--GAIGAPGKTGPVG-------PAGPAGKPGPDGLRGLPGS 1266
Score = 31.6 bits (70), Expect = 0.76
Identities = 63/239 (26%), Positives = 80/239 (33%), Gaps = 30/239 (12%)
Query: 34 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSL 93
P G G G PQG PG +G + GV L+ H E G +
Sbjct: 591 PPGTKGNQGPSGPQGPLGYPGPRGVK----GVDGIRGLKGHKGE---KGEDGFPGFKGDI 643
Query: 94 PRNRGARRIATPGLGARASRSPERVKRTTCPV-------LQIEAFAGRDIGKKGGEGVQR 146
+ P G+R PE K T P L E G G G Q
Sbjct: 644 GVKGDRGEVGVP--GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQG 701
Query: 147 KVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGC----ACEVS 201
G+ F G +G+K R S G + + GP GQ GP G + +
Sbjct: 702 PKGSLGFPGFPGASGEKGARGLS-----GKSGPRGERGPTGPRGQRGPRGATGKSGAKGT 756
Query: 202 SSGAGP-AAAVDRGGPCTSAP-AAPGNLSPDSRLLQNPLPAH--LTANFASEGLEGVPG 256
S G GP +RG P P PG P ++ LP H +G G PG
Sbjct: 757 SGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPG 815
Score = 30.8 bits (68), Expect = 1.3
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 186 GPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTAN 245
GP G PGP G E ++G+G G P P P + + + P T
Sbjct: 899 GPSGPPGPAGSPGERGAAGSGGPI----GPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGR 954
Query: 246 FASEGLEGVPGSCFP 260
+G G+PG P
Sbjct: 955 DGVQGPVGLPGPAGP 969
Score = 29.6 bits (65), Expect = 2.9
Identities = 62/245 (25%), Positives = 75/245 (30%), Gaps = 68/245 (27%)
Query: 34 PGGPAGKGGAGD--------PQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGA 85
PG P KG +GD PQG PG G R GR G A + G
Sbjct: 397 PGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR-GRAGADGARGMPG--------DPGV 447
Query: 86 KMHR----WGSLPRNRGAR-RIATPGLGARASRSPERVKRTTCPVLQIEAFAGRD--IGK 138
K R LP +G R GL ER + +G +G
Sbjct: 448 KGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGP 507
Query: 139 KGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC 198
KG G+ G G+ G K LGP G+PGP G
Sbjct: 508 KGPPGIPGPPGVR--GMDGPQGPK--------------------GSLGPQGEPGPPGQQG 545
Query: 199 EVSSSG-AGPAAAVDRGGP-----CTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLE 252
+ G GP A+ G P PG+ P P H G E
Sbjct: 546 TPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGP---------PGH-------PGKE 589
Query: 253 GVPGS 257
G PG+
Sbjct: 590 GPPGT 594
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 38.1 bits (87), Expect = 0.008
Identities = 61/232 (26%), Positives = 76/232 (32%), Gaps = 40/232 (17%)
Query: 34 PGGPAGKGGAGDPQGAGADPGNQGHR-----CGRMGVTEAARLQAHTSHISLLSEGAKMH 88
P GP G+ G P GA + G G + GR GV L + E
Sbjct: 1028 PIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKG 1087
Query: 89 RWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKV 148
G P +G + G + P PV Q A AG D G+ G G Q
Sbjct: 1088 EVGD-PGQKGTK-------GNKGEHGPPGPPGPIGPVGQPGA-AGAD-GEPGARGPQ--- 1134
Query: 149 GTAEFGISAETGKKINRS----TSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSG 204
FG + G + G K + +GP+G PGP G
Sbjct: 1135 --GHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPG-----PRGP 1187
Query: 205 AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
AGP A GP P GNL P P S G++G PG
Sbjct: 1188 AGPNGADGPQGP----PGGVGNLGP-------PGEKGEPGESGSPGIQGEPG 1228
Score = 35.0 bits (79), Expect = 0.069
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGV 65
PG+K AS P+ PGGP G G P+GA G G + G GV
Sbjct: 1440 PGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPK-GEKGV 1487
Score = 34.7 bits (78), Expect = 0.090
Identities = 57/219 (26%), Positives = 73/219 (33%), Gaps = 37/219 (16%)
Query: 28 ASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKM 87
A P S G GKG GDP GA PG + G +G A L +
Sbjct: 1323 AGSPGSEGRQGGKGAKGDPGAIGA-PG----KTGPVGPAGPAGKPGPDGLRGLPGSVGQQ 1377
Query: 88 HRWGSLPRNRGARRIATPGL-GARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQR 146
R G+ + + PGL G R D G KG +G
Sbjct: 1378 GRPGATGQAGPPGPVGPPGLPGLRG-----------------------DAGAKGEKGHPG 1414
Query: 147 KVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ-RLGPLGQPGPVGCACEVSSSGA 205
+G G E G+K +R Q G+ GP+G GP G GA
Sbjct: 1415 LIGL--IGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGA 1472
Query: 206 GPAAAVDRGGPC--TSAPAAPGNLSPDSRLLQNPLPAHL 242
A GGP PG+ P ++Q PLP +
Sbjct: 1473 --KGATGPGGPKGEKGVQGPPGHPGPPGEVIQ-PLPIQM 1508
Score = 33.5 bits (75), Expect = 0.20
Identities = 58/229 (25%), Positives = 75/229 (32%), Gaps = 32/229 (13%)
Query: 31 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 90
P+ P GP G G P GA G G G +G + + E
Sbjct: 1175 PMGPPGPPGPRGPAGPNGADGPQGPPG-GVGNLGPPGEKGEPGESGSPGIQGEPGVKGPR 1233
Query: 91 GSLPRNRGARRIATPG-LGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVG 149
G + + PG G + + K PV F G D G G G + + G
Sbjct: 1234 GERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPV----GFPG-DPGPPGEGGPRGQDG 1288
Query: 150 T-AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPA 208
+ G E G+ + + LGKR GP G PG G G G
Sbjct: 1289 AKGDRGEDGEPGQPGSPGPTGENGPPGPLGKR-----GPAGSPGSEG-----RQGGKGA- 1337
Query: 209 AAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGS 257
+G P A APG P PA +GL G+PGS
Sbjct: 1338 ----KGDP--GAIGAPGKTGPVG-------PAGPAGKPGPDGLRGLPGS 1373
Score = 31.6 bits (70), Expect = 0.76
Identities = 63/239 (26%), Positives = 80/239 (33%), Gaps = 30/239 (12%)
Query: 34 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSL 93
P G G G PQG PG +G + GV L+ H E G +
Sbjct: 698 PPGTKGNQGPSGPQGPLGYPGPRGVK----GVDGIRGLKGHKGE---KGEDGFPGFKGDI 750
Query: 94 PRNRGARRIATPGLGARASRSPERVKRTTCPV-------LQIEAFAGRDIGKKGGEGVQR 146
+ P G+R PE K T P L E G G G Q
Sbjct: 751 GVKGDRGEVGVP--GSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQG 808
Query: 147 KVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGC----ACEVS 201
G+ F G +G+K R S G + + GP GQ GP G + +
Sbjct: 809 PKGSLGFPGFPGASGEKGARGLS-----GKSGPRGERGPTGPRGQRGPRGATGKSGAKGT 863
Query: 202 SSGAGP-AAAVDRGGPCTSAP-AAPGNLSPDSRLLQNPLPAH--LTANFASEGLEGVPG 256
S G GP +RG P P PG P ++ LP H +G G PG
Sbjct: 864 SGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPG 922
Score = 30.8 bits (68), Expect = 1.3
Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 186 GPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTAN 245
GP G PGP G E ++G+G G P P P + + + P T
Sbjct: 1006 GPSGPPGPAGSPGERGAAGSGGPI----GPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGR 1061
Query: 246 FASEGLEGVPGSCFP 260
+G G+PG P
Sbjct: 1062 DGVQGPVGLPGPAGP 1076
Score = 29.6 bits (65), Expect = 2.9
Identities = 62/245 (25%), Positives = 75/245 (30%), Gaps = 68/245 (27%)
Query: 34 PGGPAGKGGAGD--------PQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGA 85
PG P KG +GD PQG PG G R GR G A + G
Sbjct: 504 PGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRR-GRAGADGARGMPG--------DPGV 554
Query: 86 KMHR----WGSLPRNRGAR-RIATPGLGARASRSPERVKRTTCPVLQIEAFAGRD--IGK 138
K R LP +G R GL ER + +G +G
Sbjct: 555 KGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGP 614
Query: 139 KGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCAC 198
KG G+ G G+ G K LGP G+PGP G
Sbjct: 615 KGPPGIPGPPGVR--GMDGPQGPK--------------------GSLGPQGEPGPPGQQG 652
Query: 199 EVSSSG-AGPAAAVDRGGP-----CTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLE 252
+ G GP A+ G P PG+ P P H G E
Sbjct: 653 TPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGP---------PGH-------PGKE 696
Query: 253 GVPGS 257
G PG+
Sbjct: 697 GPPGT 701
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 37.7 bits (86), Expect = 0.011
Identities = 59/235 (25%), Positives = 77/235 (32%), Gaps = 42/235 (17%)
Query: 31 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 90
P P GP GK G P G G G R G G+ L+ L +
Sbjct: 745 PPGPTGPPGKDGPNGPPGPPGTKGEPGER-GEDGLPGKPGLRGEIGEQGLAGRPGEKGEA 803
Query: 91 GSLPRNRGARRIATPGL-GARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVG 149
G LP PG G R + + K L + G D G+KG G G
Sbjct: 804 G-LP--------GAPGFPGVRGEKGDQGEKGE----LGLPGLKG-DRGEKGEAGPAGPPG 849
Query: 150 --------TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVS 201
T + E G K + + G+ LGP G GP G +
Sbjct: 850 LPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRP--GELGPQGPTGPPGAKGQEG 907
Query: 202 SSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
+ GA AA P APG++ P P+ + + GL G PG
Sbjct: 908 AHGAPGAA---------GNPGAPGHVGA-------PGPSGPPGSVGAPGLRGTPG 946
Score = 33.9 bits (76), Expect = 0.15
Identities = 69/275 (25%), Positives = 85/275 (30%), Gaps = 65/275 (23%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGH-----RCGRMGVTEAARL 71
PG + R L P P G G+ GA GA +PG GH G G A L
Sbjct: 882 PGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGL 941
Query: 72 QAHTSHISLLSEGAKMHRWGSLPRNRGAR-RIATPGLGARASRSPERVKRTTCPVLQIEA 130
+ E GS P G R PGL +
Sbjct: 942 RGTPGKDGERGEKGAAGEEGS-PGPVGPRGDPGAPGLPGPPGK----------------- 983
Query: 131 FAGRDIGKKGGEGVQRKVG-TAEFGISAETGKKINRSTSYMQSHGNCL------------ 177
GK G G++ G G A GK R + G C+
Sbjct: 984 ------GKDGEPGLRGSPGLPGPLGTKAACGKV--RGSENCALGGQCVKGDRGAPGIPGS 1035
Query: 178 -GKRKWQRLGPLGQPGPVGCACEVSSSGA-------GPAAAVDRGGPCTSAPAAPGNLSP 229
G R +G G PGP G + S G+ GP R G AP PG P
Sbjct: 1036 PGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDG----APGNPGERGP 1091
Query: 230 DSR----LLQNPLPAHLTA----NFASEGLEGVPG 256
+ L +P +L A N G G+PG
Sbjct: 1092 PGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPG 1126
Score = 33.9 bits (76), Expect = 0.15
Identities = 68/256 (26%), Positives = 88/256 (34%), Gaps = 30/256 (11%)
Query: 5 VRRGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQG--HRCGR 62
V+ R A +P R + + P P GP G G+ +G PG QG R G
Sbjct: 1023 VKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGA 1082
Query: 63 MGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGL-GARASRS-PERVKR 120
G SLLS G + + PGL G + + P + R
Sbjct: 1083 PGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGR 1142
Query: 121 TTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKR 180
+ EA G G G Q G E G E G+K + Q H G
Sbjct: 1143 EGTEGKKGEAGPPGLPGPPGIAGPQGSQG--ERGADGEVGQKGD------QGHPGVPG-- 1192
Query: 181 KWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPA 240
+GP G PGP G + + AGP +G P P PG P LP
Sbjct: 1193 ---FMGPPGNPGPPG--ADGIAGAAGPPGI--QGSPGKEGP--PGPQGPSG------LPG 1237
Query: 241 HLTANFASEGLEGVPG 256
+ EG +G PG
Sbjct: 1238 -IPGEEGKEGRDGKPG 1252
Score = 32.3 bits (72), Expect = 0.45
Identities = 66/264 (25%), Positives = 87/264 (32%), Gaps = 50/264 (18%)
Query: 30 DPLSPG--GPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKM 87
DP +PG GP GKG G+P G PG G +G A + + +L + K
Sbjct: 971 DPGAPGLPGPPGKGKDGEP-GLRGSPGLPGP----LGTKAACGKVRGSENCALGGQCVKG 1025
Query: 88 HRWG-SLPRNRGARRIATPGLGARASRSPERV--------KRTTCPVLQIEAFAGRD--I 136
R +P + G+R PG+G P R + AGRD
Sbjct: 1026 DRGAPGIPGSPGSR--GDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAP 1083
Query: 137 GKKGGEGVQRKVGTAEF----------------------GISAETGKKINRSTSYMQSHG 174
G G G K G + G+ G K ++
Sbjct: 1084 GNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGRE 1143
Query: 175 NCLGKRKWQRLGPLGQPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRL 233
GK+ GP G PGP G A S G G V + G P PG + P
Sbjct: 1144 GTEGKKG--EAGPPGLPGPPGIAGPQGSQGERGADGEVGQKGD-QGHPGVPGFMGPPG-- 1198
Query: 234 LQNPLPAHLTANFASEGLEGVPGS 257
NP P + G G+ GS
Sbjct: 1199 --NPGPPGADGIAGAAGPPGIQGS 1220
Score = 31.6 bits (70), Expect = 0.76
Identities = 55/214 (25%), Positives = 76/214 (35%), Gaps = 31/214 (14%)
Query: 31 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 90
P+ GP G GA P GA PG +G + G +G+ Q L R
Sbjct: 491 PMGLPGPKGDIGAIGPVGA---PGPKGEK-GDVGIGPFG--QGEKGEKGSLGLPGPPGRD 544
Query: 91 GSLPRNRGARRIATPGL----GARASRSPERVK----RTTCPVLQIEAFAGRDIGKKGGE 142
GS + PGL G R + P + R P LQ E G+KG
Sbjct: 545 GSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGLQGER------GEKGTR 598
Query: 143 GVQRKVGTAEF-GISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACE-- 199
G + + G F G +TG++ S + G +GP G PG G +
Sbjct: 599 GEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEKGD-----VGPAGPPGVPGSVVQQE 653
Query: 200 -VSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSR 232
+ P +G P P A G + P+ R
Sbjct: 654 GLKGEQGAPGPRGHQGAP--GPPGARGPIGPEGR 685
Score = 28.5 bits (62), Expect = 6.4
Identities = 56/235 (23%), Positives = 82/235 (34%), Gaps = 36/235 (15%)
Query: 27 KASDPLSPGGPAGKGGAGDP--QGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEG 84
K P PG P KG GDP +G PG +G G G+ H H L+
Sbjct: 1379 KEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQP-GDPGIP------GHKGHTGLMGPQ 1431
Query: 85 AKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGV 144
LP G + PG + P L+ E+ + + + E +
Sbjct: 1432 G-------LPGENGP--VGPPGPPGQPG----------FPGLRGESPSMETLRRLIQEEL 1472
Query: 145 QRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQ-RLGPLGQPG-PVGCACEVSS 202
+++ T + A+ +S+ GK R GP+G+PG P E S
Sbjct: 1473 GKQLETRLAYLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQGGLEGPS 1532
Query: 203 SGAGPAAAVD-RGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
GP +G P G + P Q P +A +GL G+PG
Sbjct: 1533 GPIGPKGERGAKGDPGAPGVGLRGEMGPPGIPGQPGEP-----GYAKDGLPGIPG 1582
Score = 28.1 bits (61), Expect = 8.4
Identities = 63/256 (24%), Positives = 82/256 (32%), Gaps = 39/256 (15%)
Query: 31 PLSPGGPAGKG--GAGDPQGAGADPGNQG-----HRCGRMGVTEAARLQAHTSHISLLSE 83
P +PG P G GA P G PG +G G G+ + E
Sbjct: 1197 PGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGE 1256
Query: 84 GAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQI---EAFAGR--DIGK 138
K G LP GAR PG S R + + E G+ D G
Sbjct: 1257 PGKAGEPG-LPGPEGAR--GPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGKDGDTGP 1313
Query: 139 KGGEGVQRKVG----------TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPL 188
G +G Q G E G S G+K ++ + LG R GP
Sbjct: 1314 TGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPR-----GPP 1368
Query: 189 GQPGPVGCACE--VSSSGAGPAAAVDRGGPCTSAPAAP--GNLSPDSRLLQNPLPAHLTA 244
G+PG G + V P +RG P P G P +P H
Sbjct: 1369 GEPGEKGVPGKEGVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPG----DPGIPGH-KG 1423
Query: 245 NFASEGLEGVPGSCFP 260
+ G +G+PG P
Sbjct: 1424 HTGLMGPQGLPGENGP 1439
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 37.0 bits (84), Expect = 0.018
Identities = 65/236 (27%), Positives = 83/236 (35%), Gaps = 36/236 (15%)
Query: 34 PGGPAGKGGAGDPQGAGADPGNQGH-----RCGRMGVTEAARLQAHTSHISLLSEGAKMH 88
P GP GK G G +PG G G G L+ H H L EG K
Sbjct: 256 PEGPPGKPGEDGEPGRNGNPGEVGFAGSPGARGFPGAPGLPGLKGHRGHKGL--EGPKGE 313
Query: 89 RWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKV 148
P ++G P +GA P + P + G++G G+ K
Sbjct: 314 --VGAPGSKGEAGPTGP-MGAMGPLGPRGM-----PGERGRLGPQGAPGQRGAHGMPGKP 365
Query: 149 G-TAEFGISAETGKKINRSTSYMQSHGNCLGKR-----KWQRLGPLGQPGPVGCACEVSS 202
G GI +G N M+ G R + QR G G PGPVG +
Sbjct: 366 GPMGPLGIPGSSGFPGNPG---MKGEAGPTGARGPEGPQGQR-GETGPPGPVGSPGLPGA 421
Query: 203 SGAG--PAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
G P A G P TS P PG+ P +P P T +G+ G PG
Sbjct: 422 IGTDGTPGAKGPTGSPGTSGP--PGSAGPPG----SPGPQGST---GPQGIRGQPG 468
Score = 34.3 bits (77), Expect = 0.12
Identities = 68/259 (26%), Positives = 87/259 (33%), Gaps = 46/259 (17%)
Query: 4 RVRRGRDALALPR--PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCG 61
R RG L P PG+ + A P P GP G G G GN G G
Sbjct: 1001 RGERGMPGLPGPAGTPGKVGPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTP-G 1059
Query: 62 RMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPG-LGARASRSPERVKR 120
R G + LP ++GA TPG +GA
Sbjct: 1060 RDGAVGERGDRGDPGP-------------AGLPGSQGAP--GTPGPVGAPGDAGQRGDPG 1104
Query: 121 TTCPVLQIEAFAGRDIGKKGGEGVQRKVGT-AEFGISAETGKKINRSTSYMQSHGNCLGK 179
+ P+ GR GK+G G Q G + G + G+K +R + +Q G
Sbjct: 1105 SRGPI----GPPGR-AGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGP 1159
Query: 180 RKWQR-------LGPLGQPGPVGCACEVSSSG-------AGPAAAVDRGGPCTSAPAAPG 225
Q GP G PGPVG + + + G G +V GP P PG
Sbjct: 1160 NGEQGSAGIPGPFGPRGPPGPVGPSGKEGNPGPLGPIGPPGVRGSVGEAGP-EGPPGEPG 1218
Query: 226 NLSPDSRLLQNPLPAHLTA 244
P P HLTA
Sbjct: 1219 PPGPPGP------PGHLTA 1231
Score = 32.0 bits (71), Expect = 0.58
Identities = 74/282 (26%), Positives = 87/282 (30%), Gaps = 55/282 (19%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTS 76
PG+ +A A P G P GK G P G PG G R G G Q
Sbjct: 626 PGKP--GEAGNAGVPGQRGAP-GKDGEVGPSGPVGPPGLAGER-GEQGPPGPTGFQGLPG 681
Query: 77 HISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRS--PERVKRTTCPVLQIEAFAG- 133
EG K G +P + G A LG R R ER + + + AG
Sbjct: 682 PPGPPGEGGKPGDQG-VPGDPG----AVGPLGPRGERGNPGERGEPGITGLPGEKGMAGG 736
Query: 134 -RDIGKKGGEGVQRKVG----------TAEFGISAETGKKINRSTSYMQSHGNCLGKRKW 182
G KG G G E GI+ G K +R + G
Sbjct: 737 HGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGGIGEKGAEGTAGNDGA 796
Query: 183 QRL-GPLGQPGPVGCACEVSSSGA-------------------GPAAAVDRGGP------ 216
+ L GPLG PGP G E G GP AV GP
Sbjct: 797 RGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGPTGAVGFAGPQGPDGQ 856
Query: 217 --CTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
P PG +P P L + G GVPG
Sbjct: 857 PGVKGEPGEPGQKGDAG----SPGPQGLAGSPGPHGPNGVPG 894
Score = 31.2 bits (69), Expect = 0.99
Identities = 63/268 (23%), Positives = 91/268 (33%), Gaps = 50/268 (18%)
Query: 7 RGRDALALPR-----PGRKRRSQA---LKASDPLSPGGPAGKGGAGDPQGAGADPGNQGH 58
RG L P+ PG K + + A PL P G G+ G PQGA G G
Sbjct: 302 RGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMGPLGPRGMPGERGRLGPQGAPGQRGAHGM 361
Query: 59 RCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERV 118
G+ G + + P N G + A P GAR P+
Sbjct: 362 P-GKPGPMGPLGIPGSSG----------------FPGNPGMKGEAGP-TGARGPEGPQGQ 403
Query: 119 KRTTCPVLQIEA-----FAGRDIGKKGGEGVQRKVGTA----EFGISAETGKKINRSTSY 169
+ T P + + G D G G +G GT+ G G + +
Sbjct: 404 RGETGPPGPVGSPGLPGAIGTD-GTPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQG 462
Query: 170 MQSHGNCLGKRKWQ-RLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLS 228
++ G ++ GP G+PGP G + GP + GP PG +
Sbjct: 463 IRGQPGDPGVPGFKGEAGPKGEPGPHGIQGPI-----GPPGEEGKRGP----RGDPGTVG 513
Query: 229 PDSRLLQNPLPAHLTANFASEGLEGVPG 256
P + + P N G +G+PG
Sbjct: 514 PPGPVGERGAP----GNRGFPGSDGLPG 537
Score = 30.0 bits (66), Expect = 2.2
Identities = 52/210 (24%), Positives = 66/210 (31%), Gaps = 54/210 (25%)
Query: 34 PGGPAGKGGAGDPQGAGAD--PGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWG 91
PGGP KG G+ G D PG G G+ G+
Sbjct: 962 PGGPGDKGDPGEDGQPGPDGPPGPAG-TTGQRGIV------------------------- 995
Query: 92 SLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVG-T 150
+P RG R PGL A +P +V T G G +G VG
Sbjct: 996 GMPGQRGER--GMPGLPGPAG-TPGKVGPT---------------GATGDKGPPGPVGPP 1037
Query: 151 AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGA-GPAA 209
G E G + +G+R G G PGP G + G GP
Sbjct: 1038 GSNGPVGEPGPEGPAGNDGTPGRDGAVGER-----GDRGDPGPAGLPGSQGAPGTPGPVG 1092
Query: 210 AVDRGGPCTSAPAAPGNLSPDSRLLQNPLP 239
A G P + G + P R + LP
Sbjct: 1093 APGDAGQ-RGDPGSRGPIGPPGRAGKRGLP 1121
Score = 28.5 bits (62), Expect = 6.4
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 34 PGGPAGKGGAGDPQGAGADPGNQGHRCGRMG 64
P GP G+ G P G DPG+ G R G G
Sbjct: 928 PAGPLGEPGKEGPPGLRGDPGSHG-RVGDRG 957
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 36.6 bits (83), Expect = 0.024
Identities = 59/215 (27%), Positives = 74/215 (34%), Gaps = 26/215 (12%)
Query: 36 GPAGKGGAGDPQGAGADPGNQGH--RCGRMGVTEAARLQAHTSHISLLS-EGAKMHRWGS 92
GP G+ G P G PG G R G G A L+ + +GA
Sbjct: 1378 GPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPPGKTGPIGPQGAP-----G 1432
Query: 93 LPRNRGARRIATP--GLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGT 150
P G R I P G S P+ P + G D G KG +G +G
Sbjct: 1433 KPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPP-GLPGLKG-DSGPKGEKGHPGLIGL 1490
Query: 151 AEFGISAETGKKINRSTSYMQSHGNCLGKRKWQR-LGPLGQPGPVGCACEVSSSGAGPAA 209
G E G+K +R Q G++ GP+G PGP G GP
Sbjct: 1491 --IGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGL-----PGPPGPKG 1543
Query: 210 AVDRGGPC-----TSAPAAPGNLSPDSRLLQNPLP 239
A GP P PG P ++Q PLP
Sbjct: 1544 AKGSSGPTGPKGEAGHPGPPGPPGPPGEVIQ-PLP 1577
Score = 34.7 bits (78), Expect = 0.090
Identities = 63/243 (25%), Positives = 80/243 (32%), Gaps = 31/243 (12%)
Query: 32 LSPGGPAGKGGAGDPQGAG---ADPGNQG--HRCGRMGVTEAARLQAHTSHISLLS---- 82
+ P GP G+ G P+G G DPG G G++GV +
Sbjct: 831 IGPPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGF 890
Query: 83 EGAKMHRWG-SLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRD--IGKK 139
GA + G P G R P G R R P + P + +G D G
Sbjct: 891 PGANGEKGGRGTPGKPGPRGQRGP-TGPRGERGPRGITGKPGP----KGNSGGDGPAGPP 945
Query: 140 GGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACE 199
G G G G G + H G+ +Q G G PGP G
Sbjct: 946 GERGPNGPQGPT--GFPGPKGPPGPPGKDGLPGHPGQRGETGFQ--GKTGPPGPPGVVGP 1001
Query: 200 VSSSG-AGPAAAVDRGGPCTSAPAAPG-----NLSPDSRLLQNPLPAHLTANFASEGLEG 253
+G GP +RG P P PG L+ +P PA L GL G
Sbjct: 1002 QGPTGETGPMG--ERGHP--GPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRG 1057
Query: 254 VPG 256
PG
Sbjct: 1058 FPG 1060
Score = 32.7 bits (73), Expect = 0.34
Identities = 66/237 (27%), Positives = 80/237 (33%), Gaps = 30/237 (12%)
Query: 31 PLSPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRW 90
P P GP+G GA PQG GN G G G A L EG
Sbjct: 1253 PPGPRGPSGAPGADGPQGPPGGIGNPG-AVGEKGEPGEA------GEPGLPGEGGPPGPK 1305
Query: 91 GSLPRNRGARRIATPG-----LGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQ 145
G RG + + P G + + K + PV F G D G G G
Sbjct: 1306 G----ERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPV----GFPG-DPGPPGEPGPA 1356
Query: 146 RKVG-TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSG 204
+ G + G E G+ + + GKR GP G GP G E + G
Sbjct: 1357 GQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKR-----GPPGPAGPEGRQGEKGAKG 1411
Query: 205 -AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPGSCFP 260
AG + GP APG PD L P P S G +G PG P
Sbjct: 1412 EAGLEGPPGKTGP-IGPQGAPGKPGPDG-LRGIPGPVGEQGLPGSPGPDGPPGPMGP 1466
Score = 31.2 bits (69), Expect = 0.99
Identities = 72/274 (26%), Positives = 89/274 (32%), Gaps = 60/274 (21%)
Query: 7 RGRDALALPR--PGRKRRSQALKASDPLSPGGPAG----------KGGAGDPQGAGADPG 54
RG D PR PG L P P GP G KG G PQG PG
Sbjct: 663 RGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPKGNVG-PQGEPGPPG 721
Query: 55 NQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRS 114
QG+ A L I E + + G LP GA PG +
Sbjct: 722 QQGN-------PGAQGLPGPQGAIGPPGEKGPLGKPG-LPGMPGAD--GPPGHPGKEGPP 771
Query: 115 PERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHG 174
E+ + P Q G KG +G++ G+ G+K +
Sbjct: 772 GEKGGQGP-PGPQGPIGYPGPRGVKGADGIR--------GLKGTKGEKGEDGFPGFKGDM 822
Query: 175 NCLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLL 234
G R G +G PGP G GP RGGP PG L P
Sbjct: 823 GIKGDR-----GEIGPPGPRG--------EDGPEGPKGRGGP----NGDPGPLGPPGEKG 865
Query: 235 QNPLPAHLTANFASEGLEGVPGSCFPSCGTLPFP 268
+ +P GL G PG P G++ FP
Sbjct: 866 KLGVP----------GLPGYPGRQGPK-GSIGFP 888
Score = 30.4 bits (67), Expect = 1.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 17 PGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHR 59
PG+K P P GP G G P GA +PG +G +
Sbjct: 1164 PGQKGSKGDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQ 1206
Score = 29.6 bits (65), Expect = 2.9
Identities = 24/76 (31%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 186 GPLGQPGPVGCACEVSSSG-AGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTA 244
GP G PGP G E +G AGP R GP A +P + Q P
Sbjct: 1078 GPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAPGEKGPQGP-----AG 1132
Query: 245 NFASEGLEGVPGSCFP 260
+G G+PG P
Sbjct: 1133 RDGLQGPVGLPGPAGP 1148
Score = 28.1 bits (61), Expect = 8.4
Identities = 61/249 (24%), Positives = 83/249 (33%), Gaps = 42/249 (16%)
Query: 31 PLSPGGPAGKGGAGDP--QGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMH 88
P G P KGG G P QG PG +G + G G+ + M
Sbjct: 765 PGKEGPPGEKGGQGPPGPQGPIGYPGPRGVK-GADGIRGLKGTKGEKGEDGFPGFKGDM- 822
Query: 89 RWGSLPRNRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKV 148
+ +RG I P G R PE K P D G G G + K+
Sbjct: 823 ---GIKGDRG--EIGPP--GPRGEDGPEGPKGRGGP--------NGDPGPLGPPGEKGKL 867
Query: 149 GTAEFGISAETGKKINRST----SYMQSHGNCLGKRKWQRLGPLGQPGPVGCACE----- 199
G G+ G++ + + + ++G G+ + GP GQ GP G E
Sbjct: 868 GVP--GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRG 925
Query: 200 --------VSSSGAGPAAAVDRGGP--CTSAPAAPGNLSPDSRLLQNPLPAH--LTANFA 247
+S G GPA GP PG P ++ LP H
Sbjct: 926 ITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETG 985
Query: 248 SEGLEGVPG 256
+G G PG
Sbjct: 986 FQGKTGPPG 994
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 36.6 bits (83), Expect = 0.024
Identities = 71/256 (27%), Positives = 83/256 (32%), Gaps = 63/256 (24%)
Query: 4 RVRRGRDALALPRPGRKRRSQALKASDPLSPG-GPAGKGGAGDPQGAGADPGNQGHRCGR 62
R R G D AL G R L PG G G+G G G G + R G+
Sbjct: 3 RSRAGADEAALLLAGLALRE--------LEPGCGSPGRGRRGPRPGPGDEAAPALGRRGK 54
Query: 63 MGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRTT 122
S G + G RG RR A P L A+ + SP
Sbjct: 55 G------------------SGGPEAGADGLSRGERGPRRAAVPELSAQPAGSPR------ 90
Query: 123 CPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKW 182
+ AG D G GG G R G S Y Q HG+ R
Sbjct: 91 ------ASLAGSDGG--GGGGSARSSGI---------------SLGYDQRHGSPRSGRSD 127
Query: 183 QRLGPLGQPGPVGCACEVSSSGA-GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAH 241
R GP G P VSS G+ G A A P + PA + P P P
Sbjct: 128 PRPGP-GPPSVGSARSSVSSLGSRGSAGAYADFLPPGACPAPARSPEP-----AGPAPFP 181
Query: 242 LTANFASEGLEGVPGS 257
L A G EG P +
Sbjct: 182 LPALPLPPGREGGPSA 197
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 35.8 bits (81), Expect = 0.040
Identities = 59/248 (23%), Positives = 84/248 (33%), Gaps = 24/248 (9%)
Query: 2 LCRVRRGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGGAGDPQGAGADPGNQGHRCG 61
L RVR GR RR +A L P G G G+ GA P + G
Sbjct: 265 LSRVRTVPTRKGAGGKGRHRRHRAWMHQKGLGPRGQDGARPPGEGSSTGASPESPP---G 321
Query: 62 RMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRSPERVKRT 121
V EAA L+ + E + GS P G R G G A P +RT
Sbjct: 322 AEAVPEAAVLEVSEPPAEAVGEAS-----GSCPLRPGELR-GGGGGGQGAEGPPGTPRRT 375
Query: 122 TCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGISAETGKKINRSTSYM---------QS 172
+ + AGR +GG+ G E E + + + +
Sbjct: 376 GKGNRRKKRAAGRGALSRGGDSAPLSPGDKEDASHQEALGNLPSPSEHKLPECHLVKEEY 435
Query: 173 HGNCLGKRKWQRLGPLGQPGP-VGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDS 231
G+ + + + L G+ P + AC + GAG G C + G+ P+
Sbjct: 436 EGSGKPESEPKELKTAGEKEPQLSEACGPTEEGAGERELEGPGLLCMA-----GHTGPEG 490
Query: 232 RLLQNPLP 239
L P P
Sbjct: 491 PLSDTPTP 498
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 35.0 bits (79), Expect = 0.069
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 16 RPGRKRRSQALKASDPLSPGGPAGKG-GAGDPQGAGADPGNQGHRCGRMG 64
R GRKRRS A PGG AG G G GD G+ A G +G + G
Sbjct: 34 RGGRKRRSSRRSAGGGAGPGGAAGGGVGGGDEPGSPAQ-GKRGKKSAGCG 82
>gi|169211554 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 35.0 bits (79), Expect = 0.069
Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 22/101 (21%)
Query: 163 INRSTSYMQSHGNCLGKRKWQRLGPL--------GQPGP-----VGCAC-------EVSS 202
+NRS S + GN L KR W + + G P P G AC E+
Sbjct: 1 MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP 60
Query: 203 SGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLT 243
A A R PC S P A G + L PL A LT
Sbjct: 61 LSAATDTAPSRAAPCPSTPGAAGRANNKEPPL--PLLADLT 99
>gi|239754110 PREDICTED: hypothetical protein XP_002345881 [Homo
sapiens]
Length = 284
Score = 35.0 bits (79), Expect = 0.069
Identities = 41/147 (27%), Positives = 50/147 (34%), Gaps = 17/147 (11%)
Query: 1 MLCRVRRGRDALALPRPGRKRRSQALKASDPLSPGGPAGKGG-----AGDPQGAGADPGN 55
+LC R A LP + A D GG A +GG AG G G G
Sbjct: 131 LLCAAAEARGAATLPAA-----AATTTALDGPGAGGGAERGGSGRSSAGGGGGGGGGGGG 185
Query: 56 QGHRCGRMGVTEAA-RLQAHTSHISLLSEGAKMHRWGSLPRNRGARRIATPGLGARASRS 114
+G R GR G R QA +S L + R L RR A R+
Sbjct: 186 RGSRRGRGGGERGGPRAQAVRRRLSALRGRGRRRRLKRL------RRAQETSGAAALERA 239
Query: 115 PERVKRTTCPVLQIEAFAGRDIGKKGG 141
V+ PVLQ R + G
Sbjct: 240 CASVREELLPVLQFSEPGKRAVQTSSG 266
>gi|169211959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 35.0 bits (79), Expect = 0.069
Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 22/101 (21%)
Query: 163 INRSTSYMQSHGNCLGKRKWQRLGPL--------GQPGP-----VGCAC-------EVSS 202
+NRS S + GN L KR W + + G P P G AC E+
Sbjct: 1 MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSPDPFRKELPP 60
Query: 203 SGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLT 243
A A R PC S P A G + L PL A LT
Sbjct: 61 LSAATDTAPSRAAPCPSTPGAAGRANNKEPPL--PLLADLT 99
>gi|169211178 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 35.0 bits (79), Expect = 0.069
Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 22/101 (21%)
Query: 163 INRSTSYMQSHGNCLGKRKWQRLGPL--------GQPGP-----VGCAC-------EVSS 202
+NRS S + GN L KR W + + G P P G AC E+
Sbjct: 1 MNRSLSQRELRGNALQKRCWYQKSAVFSVISRAEGLPAPHTVSVTGAACSLDPFRKELPP 60
Query: 203 SGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLT 243
A A R PC S P A G + L PL A LT
Sbjct: 61 LSAATDTAPSRAAPCPSTPGAAGRANNKEPPL--PLLADLT 99
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 35.0 bits (79), Expect = 0.069
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 185 LGPLGQPGPVGCACEVSSSG--AGPAAAVDRG--GPCTSAPAAPG 225
+GPLG PGP+G + E G P AA D+G GP T P PG
Sbjct: 76 IGPLGAPGPIGLSGEKGMRGDRGPPGAAGDKGDKGP-TGVPGFPG 119
Score = 30.8 bits (68), Expect = 1.3
Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 17/90 (18%)
Query: 186 GPLGQPGPVGCACEVSSSG-------AGPAAAVDRGGPCTSA--PAAPGN-----LSPDS 231
GP G+PG GC +SG GP + R GP S+ P PG+ L
Sbjct: 1085 GPKGEPGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDHGMPGLRGQP 1144
Query: 232 RLLQNPLPAHLTANFASEGLEGVPGSCFPS 261
+ +P P L + G+ G PG PS
Sbjct: 1145 GEMGDPGPRGLQGD---PGIPGPPGIKGPS 1171
Score = 30.4 bits (67), Expect = 1.7
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 15/84 (17%)
Query: 184 RLGPLGQPGPVGCACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRL----LQNPLP 239
R GP G PGP G GP A VD P APG P+ + ++ P
Sbjct: 1353 RKGPTGLPGPRG--------EPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPSG 1404
Query: 240 AHLTAN---FASEGLEGVPGSCFP 260
G++GVPGS P
Sbjct: 1405 PGCKGEPGLDGRRGVDGVPGSPGP 1428
Score = 29.6 bits (65), Expect = 2.9
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 185 LGPLGQPGPVGCACEVSSSGAG-PAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLT 243
LGP G+ GPVG G G P +RG P P PG PD L+ ++
Sbjct: 618 LGPPGKAGPVG------PPGLGFPGPPGERGHP--GVPGHPGVRGPDG--LKGQKGDTIS 667
Query: 244 ANFASEGLEGVPG 256
N G G PG
Sbjct: 668 CNVTYPGRHGPPG 680
Score = 28.9 bits (63), Expect = 4.9
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 29 SDPLSPGGPAGKGGAGDPQGAGADPGNQG 57
S +SP GP GK G P G+ PG G
Sbjct: 1217 SPGISPPGPRGKKGPPGPPGSSGPPGPAG 1245
Score = 28.5 bits (62), Expect = 6.4
Identities = 32/122 (26%), Positives = 42/122 (34%), Gaps = 14/122 (11%)
Query: 137 GKKGGEGVQRKVGTAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGC 196
G KG G+ GI G++ + + + G GK+ GP G PG
Sbjct: 1187 GTKGASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPGP-RGKK-----GPPGPPG---- 1236
Query: 197 ACEVSSSGAGPAAAVDRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
SS GPA A R P PG+ P P + + L G PG
Sbjct: 1237 ----SSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPG 1292
Query: 257 SC 258
C
Sbjct: 1293 DC 1294
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 34.3 bits (77), Expect = 0.12
Identities = 65/229 (28%), Positives = 82/229 (35%), Gaps = 28/229 (12%)
Query: 33 SPGGPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGS 92
SPG +GG GDP PG +G G +G + Q ++ S G K + G
Sbjct: 362 SPGERGDQGGKGDP----GRPGRRGPP-GEIGAKGSKGYQGNSGAPG--SPGVKGAKGGP 414
Query: 93 LPRNRGAR--RIATPGL-GARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVG 149
PR R PG G+ S P+ K P AG ++G KG +G + G
Sbjct: 415 GPRGPKGEPGRRGDPGTKGSPGSDGPKGEKGDPGPE-GPRGLAG-EVGNKGAKGDRGLPG 472
Query: 150 -TAEFGISAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGAGPA 208
G E GK+ +R G R G GQPGP G S GP
Sbjct: 473 PRGPQGALGEPGKQGSRGDP------GDAGPR-----GDSGQPGPKGDPGRPGFSYPGPR 521
Query: 209 AAV-DRGGPCTSAPAAPGNLSPDSRLLQNPLPAHLTANFASEGLEGVPG 256
A ++G P P P D L P A G G PG
Sbjct: 522 GAPGEKGEP---GPRGPEGGRGDFGLKGEPGRKGEKGEPADPGPPGEPG 567
Score = 31.2 bits (69), Expect = 0.99
Identities = 60/232 (25%), Positives = 78/232 (33%), Gaps = 48/232 (20%)
Query: 36 GPAGKGGAGDPQGAGADPGNQGHRCGRMGVTEAARLQAHTSHISLLSEGAKMHRWGSLPR 95
G GK G P G DPGN+G G G EA S G + + G
Sbjct: 331 GQKGKLGRIGPPGCKGDPGNRGPD-GYPG--EAG------------SPGERGDQGGKGDP 375
Query: 96 NRGARRIATPGLGARASRSPERVKRTTCPVLQIEAFAGRDIGKKGGEGVQRKVGTAEFGI 155
R RR +GA+ S+ Q + A G KG +G G G
Sbjct: 376 GRPGRRGPPGEIGAKGSKG-----------YQGNSGAPGSPGVKGAKG-----GPGPRGP 419
Query: 156 SAETGKKINRSTSYMQSHGNCLGKRKWQRLGPLGQPGPVGCACEVSSSGA---------- 205
E G++ + T G++ G G GP G A EV + GA
Sbjct: 420 KGEPGRRGDPGTKGSPGSDGPKGEK-----GDPGPEGPRGLAGEVGNKGAKGDRGLPGPR 474
Query: 206 GPAAAVDRGGPCTSAPAAPGNLSPDSRLLQ-NPLPAHLTANFASEGLEGVPG 256
GP A+ G + PG+ P Q P F+ G G PG
Sbjct: 475 GPQGALGEPGK-QGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGAPG 525
Score = 29.3 bits (64), Expect = 3.8
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 17 PGRKRRSQALKASDPLSPG--GPAGKGGAGDPQGAGADPGNQG 57
PGRK + + +DP PG GP G G P+G PG+ G
Sbjct: 548 PGRK--GEKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPG 588
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,504,432
Number of Sequences: 37866
Number of extensions: 795411
Number of successful extensions: 9058
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 5469
Number of HSP's gapped (non-prelim): 3094
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.