Search of human proteins with 113424170

Search of human proteins with 113424170

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|113424170 PREDICTED: similar to hCG28707 [Homo sapiens]
         (486 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|113424170 PREDICTED: similar to hCG28707 [Homo sapiens]            981   0.0  
gi|169206175 PREDICTED: similar to hCG28707 [Homo sapiens]            758   0.0  
gi|169206491 PREDICTED: similar to hCG28707 [Homo sapiens]            758   0.0  
gi|39725952 angiogenic factor VG5Q [Homo sapiens]                      36   0.069
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        33   0.58 
gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithora...    33   0.76 
gi|12707580 paired-like homeobox 2b [Homo sapiens]                     32   1.3  
gi|18105007 carbamoylphosphate synthetase 2/aspartate transcarba...    32   1.7  
gi|31543060 DHDPS-like protein isoform 1 [Homo sapiens]                31   2.9  
gi|7662184 zinc finger homeobox 1b [Homo sapiens]                      31   2.9  
gi|32528295 ribosomal protein S6 kinase, polypeptide 5 isoform a...    31   2.9  
gi|221219004 WD repeat domain 74 [Homo sapiens]                        31   2.9  
gi|9910418 mouse Mdm1 nuclear protein homolog isoform 2 [Homo sa...    30   3.8  
gi|56549653 neuro-oncological ventral antigen 1 isoform 1 [Homo ...    30   6.4  
gi|56549651 neuro-oncological ventral antigen 1 isoform 2 [Homo ...    30   6.4  
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    30   6.4  
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    30   6.4  
gi|13489077 homeobox A6 [Homo sapiens]                                 30   6.4  
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               30   6.4  
gi|163310749 LIM and calponin homology domains 1 isoform e [Homo...    30   6.4  
gi|163310747 LIM and calponin homology domains 1 isoform d [Homo...    30   6.4  
gi|163310745 LIM and calponin homology domains 1 isoform c [Homo...    30   6.4  
gi|163310743 LIM and calponin homology domains 1 isoform b [Homo...    30   6.4  
gi|163310741 LIM and calponin homology domains 1 isoform a [Homo...    30   6.4  
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]       29   8.4  
gi|21735548 centrosomal protein 2 [Homo sapiens]                       29   8.4  
gi|98986321 gliomedin [Homo sapiens]                                   29   8.4  
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]               29   8.4  

>gi|113424170 PREDICTED: similar to hCG28707 [Homo sapiens]
          Length = 486

 Score =  981 bits (2536), Expect = 0.0
 Identities = 486/486 (100%), Positives = 486/486 (100%)

Query: 1   MLCEGKENSTHSPLQSKGKPGPRKEQLPARGSLSRGVLGAFEVGSQGVEAAASPNGQYGP 60
           MLCEGKENSTHSPLQSKGKPGPRKEQLPARGSLSRGVLGAFEVGSQGVEAAASPNGQYGP
Sbjct: 1   MLCEGKENSTHSPLQSKGKPGPRKEQLPARGSLSRGVLGAFEVGSQGVEAAASPNGQYGP 60

Query: 61  SWGLAAEESVCPTNVATLQLTDASVQKVVVRISESSSCLHNGLLSGNGCEVHYRRARLFQ 120
           SWGLAAEESVCPTNVATLQLTDASVQKVVVRISESSSCLHNGLLSGNGCEVHYRRARLFQ
Sbjct: 61  SWGLAAEESVCPTNVATLQLTDASVQKVVVRISESSSCLHNGLLSGNGCEVHYRRARLFQ 120

Query: 121 DAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFNSSPQRKTAA 180
           DAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFNSSPQRKTAA
Sbjct: 121 DAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFNSSPQRKTAA 180

Query: 181 ESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLRQEEDRAWMY 240
           ESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLRQEEDRAWMY
Sbjct: 181 ESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLRQEEDRAWMY 240

Query: 241 SRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPVRSTPKEIKK 300
           SRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPVRSTPKEIKK
Sbjct: 241 SRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPVRSTPKEIKK 300

Query: 301 ATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLHS 360
           ATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLHS
Sbjct: 301 ATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLHS 360

Query: 361 NWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKAVEGAFNTWK 420
           NWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKAVEGAFNTWK
Sbjct: 361 NWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKAVEGAFNTWK 420

Query: 421 FKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPKGQWLLRERL 480
           FKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPKGQWLLRERL
Sbjct: 421 FKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPKGQWLLRERL 480

Query: 481 WERTVP 486
           WERTVP
Sbjct: 481 WERTVP 486


>gi|169206175 PREDICTED: similar to hCG28707 [Homo sapiens]
          Length = 386

 Score =  758 bits (1956), Expect = 0.0
 Identities = 374/375 (99%), Positives = 374/375 (99%)

Query: 112 HYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFN 171
           HYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFN
Sbjct: 12  HYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFN 71

Query: 172 SSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR 231
           SSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR
Sbjct: 72  SSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR 131

Query: 232 QEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPV 291
           QEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPV
Sbjct: 132 QEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPV 191

Query: 292 RSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVAT 351
           RSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVAT
Sbjct: 192 RSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVAT 251

Query: 352 SSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKA 411
           SSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKA
Sbjct: 252 SSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKA 311

Query: 412 VEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPK 471
           VEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPK
Sbjct: 312 VEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPK 371

Query: 472 GQWLLRERLWERTVP 486
           GQWLLRERLWER VP
Sbjct: 372 GQWLLRERLWERMVP 386


>gi|169206491 PREDICTED: similar to hCG28707 [Homo sapiens]
          Length = 386

 Score =  758 bits (1956), Expect = 0.0
 Identities = 374/375 (99%), Positives = 374/375 (99%)

Query: 112 HYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFN 171
           HYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFN
Sbjct: 12  HYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFN 71

Query: 172 SSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR 231
           SSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR
Sbjct: 72  SSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLR 131

Query: 232 QEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPV 291
           QEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPV
Sbjct: 132 QEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPV 191

Query: 292 RSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVAT 351
           RSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVAT
Sbjct: 192 RSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLPNEDVDFDVAT 251

Query: 352 SSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKA 411
           SSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKA
Sbjct: 252 SSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLERHPIYLPKA 311

Query: 412 VEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPK 471
           VEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPK
Sbjct: 312 VEGAFNTWKFKPKACKKDLGSSRQILFNFSGEDMEWDAELFALEPQLSPGEDYYETENPK 371

Query: 472 GQWLLRERLWERTVP 486
           GQWLLRERLWER VP
Sbjct: 372 GQWLLRERLWERMVP 386


>gi|39725952 angiogenic factor VG5Q [Homo sapiens]
          Length = 714

 Score = 36.2 bits (82), Expect = 0.069
 Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 15/178 (8%)

Query: 141 ALIKWRQHRQLE-----GTHRKKSSTMFRKIHSIFNSS-PQRKTAAESPFYEGASPAVKL 194
           +++  + H Q+E     GT R ++    +  H   NS  P    A E    EG+S A  L
Sbjct: 135 SILNSKDHLQVENDAYPGTDRTENVKYRQVDHFASNSQEPASALATEDTSLEGSSLAESL 194

Query: 195 IRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYLRQEEDRAWMYSRTQDCLQYLQELL 254
            R+++   V   G  + E+   Y   S   T  YY  + +    +Y      + Y  ++ 
Sbjct: 195 -RAAAEAAVSQTGFSYDENTGLYFDHS---TGFYYDSENQ----LYYDPSTGIYYYCDVE 246

Query: 255 ALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPVRSTPKEIKKATPKKYSQFSAD 312
           + R ++ S   DL+P+ T     +  K  K  +K P  S   E K    +    FS +
Sbjct: 247 SGRYQFHSRV-DLQPYPTSSTKQSKDKKLKKKRKDPDSSATNEEKDLNSEDQKAFSVE 303


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 33.1 bits (74), Expect = 0.58
 Identities = 66/294 (22%), Positives = 110/294 (37%), Gaps = 37/294 (12%)

Query: 114  RRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQLEGTHRKKSSTMFRKIHSIFNSS 173
            R+ARL + ++  + SP  R   R P     + R+   +      + S   R+  S   SS
Sbjct: 1699 RKARLSRRSRSASSSPETRS--RTPP----RHRRSPSVSSPEPAEKSRSSRRRRSA--SS 1750

Query: 174  PQRKTAAESPFYEGASPAVK---LIRSSSMYVVGDHGEKFSESLKKYKSTSSMDTSLYYL 230
            P+ KT +      G SP+ K   L RS S        EK   + ++ +S SS  TS    
Sbjct: 1751 PRTKTTSR----RGRSPSPKPRGLQRSRSR----SRREKTRTTRRRDRSGSSQSTSR--- 1799

Query: 231  RQEEDRAWMYSRTQDCLQYLQELLALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTP 290
            R++  R+             +  +  R++  S +    P R +  S TSS+  +G  +TP
Sbjct: 1800 RRQRSRS-------------RSRVTRRRRGGSGYHSRSPARQES-SRTSSRRRRGRSRTP 1845

Query: 291  VRSTPKEIKKATPKKYSQFSADVAEAIAFFDSIIAELDTERRPRAAEASLP-NEDVDFDV 349
              S  +   + +P  + +  +  + A          L + RR R+  + +          
Sbjct: 1846 PTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTS 1905

Query: 350  ATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEHRTVGTQRRLER 403
             T  R  S  S    R  R  +  +      +     RR +  RT    RR  R
Sbjct: 1906 VTRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSR 1959


>gi|21361272 myeloid/lymphoid or mixed-lineage leukemia (trithorax
           homolog, Drosophila); translocated to, 1 [Homo sapiens]
          Length = 559

 Score = 32.7 bits (73), Expect = 0.76
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 16/99 (16%)

Query: 262 SSFSDLKPHRTQGISSTSSKSSKGGKKTPVRSTPKEIKKATPKKYSQFSADVAEAIAFFD 321
           SSFSD KP +         KSS  G+K    S P+E KKA   + S      +E  A F 
Sbjct: 322 SSFSDKKPAK--------DKSSTRGEKVKAESEPREAKKALEVEESN-----SEDEASFK 368

Query: 322 SIIAELDTERRPRAAEASLPNEDVDFDVATSSREHSLHS 360
           S  A+        ++++S    D DF+ + +  +  L S
Sbjct: 369 SESAQSSPSNSSSSSDSS---SDSDFEPSQNHSQGPLRS 404


>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 4   EGKENSTHSPLQSKGKPGPRKEQLPARGSLSRGVLGAFEVGSQGVEAAASPNGQYGPSWG 63
           E KE  +  P  S G PGP     P+ G+   G  G    G+ G      P G+ G    
Sbjct: 183 ESKEAKSTDP-DSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGA 241

Query: 64  LAA 66
            AA
Sbjct: 242 AAA 244


>gi|18105007 carbamoylphosphate synthetase 2/aspartate
           transcarbamylase/dihydroorotase [Homo sapiens]
          Length = 2225

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 13  PLQSKGKPGPRKEQLPARGSLSRGVLGAFEV-GSQGVEAAASPNGQYGPSWGLAAEESVC 71
           P    G P PRK  +   G LS G  G F+  GSQ ++A    N           +  + 
Sbjct: 384 PTPGSGLPPPRKVLILGSGGLSIGQAGEFDYSGSQAIKALKEEN----------IQTLLI 433

Query: 72  PTNVATLQLTDASVQKV 88
             N+AT+Q +     KV
Sbjct: 434 NPNIATVQTSQGLADKV 450


>gi|31543060 DHDPS-like protein isoform 1 [Homo sapiens]
          Length = 327

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 3/128 (2%)

Query: 28  PARGSLSRGVLGAFE--VGSQGVEAAASPNGQYGPSWGLAAEESVCPTNVATLQLTDASV 85
           P RG + +G  G F     S+ +E  +    Q  P   L    S C +  AT+++T +  
Sbjct: 68  PFRGFVVQGSNGEFPFLTSSERLEVVSRVR-QAMPKNRLLLAGSGCESTQATVEMTVSMA 126

Query: 86  QKVVVRISESSSCLHNGLLSGNGCEVHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKW 145
           Q         + C + G +S      HY +        +   S      L  PV+A++  
Sbjct: 127 QVGADAAMVVTPCYYRGRMSSAALIHHYTKVADLSPIPVVLYSVPANTGLDLPVDAVVTL 186

Query: 146 RQHRQLEG 153
            QH  + G
Sbjct: 187 SQHPNIVG 194


>gi|7662184 zinc finger homeobox 1b [Homo sapiens]
          Length = 1214

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 14/73 (19%)

Query: 330 ERRPRAAEASLPNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRS 389
           E  P  ++A LP E+ + ++     EH  H+N IL+A              +VDG     
Sbjct: 69  ESSPHVSQALLPREEEEDEIREGGVEHPWHNNEILQA--------------SVDGPEEMK 114

Query: 390 TEHRTVGTQRRLE 402
            ++ T+G +  ++
Sbjct: 115 EDYDTMGPEATIQ 127


>gi|32528295 ribosomal protein S6 kinase, polypeptide 5 isoform a
           [Homo sapiens]
          Length = 802

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 240 YSRTQDCLQYLQEL-LALRKKYLSSFSDLKPHRTQGISSTSSKSSKGGKKTPVR----ST 294
           Y R   CLQ + +  LA R+K   + +  +   +   SS SS S   GK TP +    S 
Sbjct: 725 YKREGFCLQNVDKAPLAKRRKMKKTSTSTETRSSSSESSHSSSSHSHGKTTPTKTLQPSN 784

Query: 295 PKEIKKATPKKYSQFSADVA 314
           P +     P+   QFS  VA
Sbjct: 785 PAD--SNNPETLFQFSDSVA 802


>gi|221219004 WD repeat domain 74 [Homo sapiens]
          Length = 385

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 7/77 (9%)

Query: 134 DLRAPVNALIKWRQHRQ-LEGTHRKKSSTMFRKIHSIFNSSPQRKTAAESPFYEGASPAV 192
           DLR P+     W Q  Q L G+ +  + T + ++     +SPQR+   E+ + E    A+
Sbjct: 179 DLRVPI-----WDQDIQFLPGSQKLVTCTGYHQVRVYDPASPQRRPVLETTYGEYPLTAM 233

Query: 193 KLIRSSSMYVVGD-HGE 208
            L    +  +VG+ HG+
Sbjct: 234 TLTPGGNSVIVGNTHGQ 250


>gi|9910418 mouse Mdm1 nuclear protein homolog isoform 2 [Homo
           sapiens]
          Length = 222

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 28/93 (30%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 333 PRAAEASLPNEDVDFDVATSSREHSLHSNWILRAPRRHSEDIAAHTVHTVDGQFRRSTEH 392
           P A E     E    DV T  R HSL ++ + +  R HS D  A     V+      T H
Sbjct: 86  PEAPETPKSQEAEQKDV-TQERVHSLEASRVPKRTRSHSADSRAEGASDVENN-EGVTNH 143

Query: 393 RTVGTQRRLERHPIYLPKAVE---GAFNTWKFK 422
             V     LE     L + V+   G F  + FK
Sbjct: 144 TPVNENVELEHSTKVLSENVDNGVGIFTAFLFK 176


>gi|56549653 neuro-oncological ventral antigen 1 isoform 1 [Homo
           sapiens]
          Length = 507

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 29  ARGSLSRGVLGAFEVGSQGVEAAASPNGQYGPSWGLAAEESVCPTNVATLQLTDASVQKV 88
           A GS + G  G F +GS    A A+ NG +G +  LAA        + T + TD S   V
Sbjct: 371 ASGSTAGGTAGTFALGSLAA-ATAATNGYFGAASPLAAS-----AILGTEKSTDGSKDVV 424

Query: 89  VVRISES 95
            + + E+
Sbjct: 425 EIAVPEN 431


>gi|56549651 neuro-oncological ventral antigen 1 isoform 2 [Homo
           sapiens]
          Length = 483

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 29  ARGSLSRGVLGAFEVGSQGVEAAASPNGQYGPSWGLAAEESVCPTNVATLQLTDASVQKV 88
           A GS + G  G F +GS    A A+ NG +G +  LAA        + T + TD S   V
Sbjct: 347 ASGSTAGGTAGTFALGSLAA-ATAATNGYFGAASPLAAS-----AILGTEKSTDGSKDVV 400

Query: 89  VVRISES 95
            + + E+
Sbjct: 401 EIAVPEN 407


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 7   ENSTHSPLQSKGKPGPRKEQLPARGSLSRGVLGAFEVGSQGVEAAASPNGQYGPSWG 63
           EN +  P+  +G PG R    PA      G  GA   G+ G    A P G  GP+ G
Sbjct: 316 ENGSPGPMGPRGLPGERGRTGPA------GAAGA--RGNDGQPGPAGPPGPVGPAGG 364


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 7   ENSTHSPLQSKGKPGPRKEQLPARGSLSRGVLGAFEVGSQGVEAAASPNGQYGPSWG 63
           EN +  P+  +G PG R    PA      G  GA   G+ G    A P G  GP+ G
Sbjct: 247 ENGSPGPMGPRGLPGERGRTGPA------GAAGA--RGNDGQPGPAGPPGPVGPAGG 295


>gi|13489077 homeobox A6 [Homo sapiens]
          Length = 233

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 16/128 (12%)

Query: 95  SSSCLH---NGLLSGNGCEVHYRRARLFQDAQMPAQSPAYRGDLRAPVNALIKWRQHRQL 151
           +S C +   N +L+ N     Y  +  + D  +   SP+  G  R P + L     H   
Sbjct: 53  TSPCFYQQSNSVLACNRASYEYGASCFYSDKDLSGASPSGSGKQRGPGDYL-----HFSP 107

Query: 152 EGTHRKKSSTMFRKIHSIFNSSPQRKTAAESPFYEGASPAVKLIRSSSMYVVGDHGEKFS 211
           E  ++  SS+   K  ++ +    RK    SP Y    P ++ + S +  V G HG +  
Sbjct: 108 EQQYKPDSSSGQGK--ALHDEGADRKYT--SPVY----PWMQRMNSCAGAVYGSHGRRGR 159

Query: 212 ESLKKYKS 219
           ++  +Y++
Sbjct: 160 QTYTRYQT 167


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 7/54 (12%)

Query: 13   PLQSKGKPGPRKEQLPARGSLSRGVLG-------AFEVGSQGVEAAASPNGQYG 59
            P  SKG  GP+ +Q  A     RGV G          VG QG+E  A P+G  G
Sbjct: 1395 PKGSKGAEGPKGKQGKAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPG 1448


>gi|163310749 LIM and calponin homology domains 1 isoform e [Homo
           sapiens]
          Length = 890

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 259 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 309
           KYL   S   P  T  + +T +++S        G  +P ++ TPK +   TPK YSQ   
Sbjct: 321 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 380

Query: 310 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 341
           S DV +       +    +T  R    E   P
Sbjct: 381 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 412


>gi|163310747 LIM and calponin homology domains 1 isoform d [Homo
           sapiens]
          Length = 902

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 259 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 309
           KYL   S   P  T  + +T +++S        G  +P ++ TPK +   TPK YSQ   
Sbjct: 333 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 392

Query: 310 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 341
           S DV +       +    +T  R    E   P
Sbjct: 393 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 424


>gi|163310745 LIM and calponin homology domains 1 isoform c [Homo
           sapiens]
          Length = 1056

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 259 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 309
           KYL   S   P  T  + +T +++S        G  +P ++ TPK +   TPK YSQ   
Sbjct: 487 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 546

Query: 310 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 341
           S DV +       +    +T  R    E   P
Sbjct: 547 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 578


>gi|163310743 LIM and calponin homology domains 1 isoform b [Homo
           sapiens]
          Length = 1057

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 259 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 309
           KYL   S   P  T  + +T +++S        G  +P ++ TPK +   TPK YSQ   
Sbjct: 487 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 546

Query: 310 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 341
           S DV +       +    +T  R    E   P
Sbjct: 547 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 578


>gi|163310741 LIM and calponin homology domains 1 isoform a [Homo
           sapiens]
          Length = 1083

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 9/92 (9%)

Query: 259 KYLSSFSDLKPHRTQGISSTSSKSS------KGGKKTPVRS-TPKEIKKATPKKYSQ--F 309
           KYL   S   P  T  + +T +++S        G  +P ++ TPK +   TPK YSQ   
Sbjct: 487 KYLRQQSLPPPKFTATVETTIARASVLDTSMSAGSGSPSKTVTPKAVPMLTPKPYSQPKN 546

Query: 310 SADVAEAIAFFDSIIAELDTERRPRAAEASLP 341
           S DV +       +    +T  R    E   P
Sbjct: 547 SQDVLKTFKVDGKVSVNGETVHREEEKERECP 578


>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
          Length = 1838

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 4/48 (8%)

Query: 18  GKPGPRKEQLPA--RGSLS-RGVLG-AFEVGSQGVEAAASPNGQYGPS 61
           GKPGPR ++ P   RG    RG+ G     G+ G +  A P G+ GP+
Sbjct: 904 GKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPN 951


>gi|21735548 centrosomal protein 2 [Homo sapiens]
          Length = 2442

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 20/111 (18%)

Query: 24   KEQLPARGSLSRGVLGAF-EVGSQ-----GVEAAASPNGQYGPSWGLAAEESVCPTNVAT 77
            KE+L + G+ S   LG+  E G Q     GVEA  SP+G    SW    E       VA 
Sbjct: 2224 KERLHSPGATSTAELGSRGEQGVQLGEVSGVEAEPSPDGMEKQSWRQRLEH--LQQAVAR 2281

Query: 78   LQLTDASVQKVVVRISESSSCLHNGLLSGNGCEVHYRRARLFQDAQMPAQS 128
            L++  + +Q+            HN  L     +V   R +L ++A   AQ+
Sbjct: 2282 LEIDRSRLQR------------HNVQLRSTLEQVERERRKLKREAMRAAQA 2320


>gi|98986321 gliomedin [Homo sapiens]
          Length = 551

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 4   EGKENSTHSPLQSKGKPGP--RKEQLPARGSLSRGVLGAFEVGSQGVEAAASPNGQYGP 60
           E  E   H  L  +G  GP  +K +   +G +S  VL A   G QG      P G  GP
Sbjct: 191 ERGEKGDHGELGLQGNEGPPGQKGEKGDKGDVSNDVLLAGAKGDQGPPGPPGPPGPPGP 249


>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
          Length = 1336

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 13  PLQSKGKPGPRKEQLPARGSLSRGVLGAFEVGSQGVEAAASPNGQYGPSWG 63
           P + +G PG + +Q P +GSL     G       G++    P GQ  P+ G
Sbjct: 849 PQELRGPPGSQSQQGPPQGSLGPPPQG-------GMQGPPGPQGQQNPARG 892


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.128    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,523,859
Number of Sequences: 37866
Number of extensions: 877581
Number of successful extensions: 2416
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2393
Number of HSP's gapped (non-prelim): 46
length of query: 486
length of database: 18,247,518
effective HSP length: 106
effective length of query: 380
effective length of database: 14,233,722
effective search space: 5408814360
effective search space used: 5408814360
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.