Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC647166 Sequence: fasta or formatted (386aa) NCBI GI: 169206175
Description:

PREDICTED: similar to hCG28707

Not currently referenced in the text

Other entries for this name:
alt prot {486aa} PREDICTED: similar to hCG28707
alt mRNA {386aa} PREDICTED: similar to hCG28707
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         31           2
 C cysteine            0.8          3           1
 D aspartate           4.9         19           1
 E glutamate           7.3         28           2
 F phenylalanine       4.1         16           2
 G glycine             4.1         16           2
 H histidine           3.4         13           1
 I isoleucine          3.4         13           2
 K lysine              7.5         29           2
 L leucine             7.5         29           2
 M methionine          2.1          8           1
 N asparagine          1.8          7           1
 P proline             5.4         21           1
 Q glutamine           4.4         17           1
 R arginine            9.1         35           2
 S serine             11.1         43           3
 T threonine           5.4         21           1
 V valine              3.9         15           2
 W tryptophan          1.8          7           1
 Y tyrosine            3.9         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG28707 
LOC647166             1.000   PREDICTED: similar to hCG28707 
LOC647166             0.967   PREDICTED: similar to hCG28707 
AGGF1                 0.015   angiogenic factor VG5Q 
SRRM2                 0.011   splicing coactivator subunit SRm300 
MLLT1                 0.011   myeloid/lymphoid or mixed-lineage leukemia (trithora...
ZEB2                  0.008   zinc finger homeobox 1b 
RPS6KA5               0.008   ribosomal protein S6 kinase, polypeptide 5 isoform a...
WDR74                 0.008   WD repeat domain 74 
MDM1                  0.007   mouse Mdm1 nuclear protein homolog isoform 2 
LIMCH1                0.007   LIM and calponin homology domains 1 isoform e [Homo...
LIMCH1                0.007   LIM and calponin homology domains 1 isoform d [Homo...
LIMCH1                0.007   LIM and calponin homology domains 1 isoform c [Homo...
LIMCH1                0.007   LIM and calponin homology domains 1 isoform b [Homo...
LIMCH1                0.007   LIM and calponin homology domains 1 isoform a [Homo...
IL1R1                 0.005   interleukin 1 receptor, type I precursor 
LARP7                 0.005   La ribonucleoprotein domain family, member 7 
LARP7                 0.005   La ribonucleoprotein domain family, member 7 
PKD1L1                0.005   polycystin-1L1 
C20orf94              0.005   hypothetical protein LOC128710 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press