Guide to the Human Genome
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Name: ZEB2 Sequence: fasta or formatted (1214aa) NCBI GI: 7662184
Description:

zinc finger homeobox 1b

Referenced in:

Homeobox and Related Proteins
Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         56           2
 C cysteine            2.1         26           1
 D aspartate           5.4         66           2
 E glutamate           9.4        114           6
 F phenylalanine       2.7         33           1
 G glycine             5.3         64           2
 H histidine           4.0         48           2
 I isoleucine          3.9         47           2
 K lysine              8.0         97           2
 L leucine             7.4         90           3
 M methionine          3.2         39           1
 N asparagine          5.5         67           2
 P proline             7.2         88           2
 Q glutamine           4.0         49           2
 R arginine            4.3         52           2
 S serine             10.8        131           4
 T threonine           5.4         66           2
 V valine              3.4         41           2
 W tryptophan          0.2          2           1
 Y tyrosine            3.1         38           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger homeobox 1b 
ZEB1                  0.346   zinc finger E-box binding homeobox 1 isoform b [Hom...
ZEB1                  0.330   zinc finger E-box binding homeobox 1 isoform a [Hom...
ZNF552                0.032   zinc finger protein 552 
ZNF22                 0.031   zinc finger protein 22 (KOX 15) 
ZNF99                 0.031   zinc finger protein 99 
ZNF454                0.031   zinc finger protein 454 
ZNF461                0.031   gonadotropin inducible transcription repressor 1 [Ho...
LOC100292052          0.031   PREDICTED: similar to hCG1773661 
LOC100287226          0.031   PREDICTED: similar to hCG1773661 
LOC100287226          0.031   PREDICTED: hypothetical protein XP_002343677 
ZNF92                 0.031   zinc finger protein 92 isoform 1 
ZNF92                 0.031   zinc finger protein 92 isoform 2 
ZNF135                0.031   zinc finger protein 135 
ZNF761                0.030   zinc finger protein 761 
ZNF257                0.030   zinc finger protein 257 
ZKSCAN1               0.030   zinc finger protein 36 
ZNF70                 0.030   zinc finger protein 70 
ZNF836                0.030   zinc finger protein 836 
ZNF681                0.030   zinc finger protein 681 
ZNF626                0.030   zinc finger protein 626 isoform 1 
ZNF256                0.030   zinc finger protein 256 
ZNF91                 0.030   zinc finger protein 91 
ZNF85                 0.030   zinc finger protein 85 
ZNF708                0.030   zinc finger protein 708 
ZNF530                0.030   zinc finger protein 530 
ZNF264                0.030   zinc finger protein 264 
ZNF805                0.030   zinc finger protein 805 isoform 2 
ZNF805                0.030   zinc finger protein 805 isoform 1 
ZNF132                0.030   zinc finger protein 132 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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